instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
|---|---|---|
<Instruct>: Given the context 'Overall, of the larvae exposed to soil, 171 (20%) hosted Beauveria bassiana (Balsamo) Vuillemin (Hypocreales: Cordycipitaceae), 25 (3%) hosted Metarhizium anisopliae (Metschnikoff) Sorokin (Hypocreales: Clavicipitaceae) and 1 (0.1%) hosted lsaria (=Paecilomyces) sp. (Hypocreales: Cordycipitaceae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [beauveria bassiana; metarhizium anisopliae; lsaria (=paecilomyces) sp.]
<Options>: A: beauveria bassiana d1-5
B: lentibacillus sp.
C: beauveria australis
D: gracilaria sp.
E: cordyceps bassiana (aka beauveria bassiana)
F: alternaria sp. ls
G: metarhizium neoanisopliae
H: beauveria oryzae (aka tritirachium oryzae)
I: laetisaria sp.
J: metarhizium anisopliae brip 53293
K: metarhizium anisopliae var. acridum (aka metarhizium acridum)
L: beauveria asiatica
M: penicillium anisopliae (aka metarhizium anisopliae)
N: metarhizium robertsii
O: paecilomyces lignorum
P: None of the above. | [E; M; P] |
<Instruct>: Given the context 'Overall, of the larvae exposed to soil, 171 (20%) hosted Beauveria bassiana (Balsamo) Vuillemin (Hypocreales: Cordycipitaceae), 25 (3%) hosted Metarhizium anisopliae (Metschnikoff) Sorokin (Hypocreales: Clavicipitaceae) and 1 (0.1%) hosted lsaria (=Paecilomyces) sp. (Hypocreales: Cordycipitaceae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [beauveria bassiana; metarhizium anisopliae; lsaria (=paecilomyces) sp.]
<Options>: A: laccaria sp.
B: paecilomyces sp. cs-4
C: metarhizium atrovirens (metacordyceps atrovirens) (aka metarhizium atrovirens)
D: bassia blackiana (aka sclerolaena blackiana)
E: spicaria bassiana (aka beauveria bassiana)
F: paecilomyces sp. nfcci 1769
G: sangariola sp.
H: metarhizium anisopliae brip 53293
I: metarhizium anisopliae (metarhizium anisopliae (metschn.) sorokin, 1883) (aka metarhizium anisopliae)
J: metarhizium majus (metarhizium anisopliae var. majus) (aka metarhizium majus)
K: metarhizium anisopliae brip 53284
L: beauveria velata
M: paecilomyces sp. xcl-2011
N: beauveria thailandica
O: bassia kingiana (aka madhuca kingiana)
P: None of the above. | [E; I; P] |
<Instruct>: Given the context 'Overall, of the larvae exposed to soil, 171 (20%) hosted Beauveria bassiana (Balsamo) Vuillemin (Hypocreales: Cordycipitaceae), 25 (3%) hosted Metarhizium anisopliae (Metschnikoff) Sorokin (Hypocreales: Clavicipitaceae) and 1 (0.1%) hosted lsaria (=Paecilomyces) sp. (Hypocreales: Cordycipitaceae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [beauveria bassiana; metarhizium anisopliae; lsaria (=paecilomyces) sp.]
<Options>: A: paecilomyces sp. nsp-2003
B: metarhizium hybridum
C: lyomyces sp.
D: metarhizium anisopliae var. anisopliae (aka metarhizium anisopliae)
E: beauveria bassiana var. bassiana (aka beauveria bassiana)
F: beauveria bassiana bb 9205
G: metarhizium anisopliae ma10
H: metarhizium robertsii
I: gracilaria sp.
J: paecilomyces lignorum
K: solomyces sp.
L: beauveria bassiana d1-5
M: bassia kingiana (aka madhuca kingiana)
N: metarhizium anisopliae brip 53293
O: beauveria thailandica
P: None of the above. | [E; D; P] |
<Instruct>: Given the context 'Overall, of the larvae exposed to soil, 171 (20%) hosted Beauveria bassiana (Balsamo) Vuillemin (Hypocreales: Cordycipitaceae), 25 (3%) hosted Metarhizium anisopliae (Metschnikoff) Sorokin (Hypocreales: Clavicipitaceae) and 1 (0.1%) hosted lsaria (=Paecilomyces) sp. (Hypocreales: Cordycipitaceae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [beauveria bassiana; metarhizium anisopliae; lsaria (=paecilomyces) sp.]
<Options>: A: bassia kingiana (aka madhuca kingiana)
B: lyomyces sp.
C: gracilaria sp.
D: metarhizium anisopliae brip 53293
E: metarhizium anisopliae var. anisopliae (aka metarhizium anisopliae)
F: solomyces sp.
G: beauveria thailandica
H: metarhizium robertsii
I: beauveria bassiana bb 9205
J: paecilomyces sp. nsp-2003
K: metarhizium anisopliae ma10
L: metarhizium hybridum
M: paecilomyces lignorum
N: beauveria bassiana d1-5
O: None of the above. | [O; E; O] |
<Instruct>: Given the context 'B. bassiana was significantly more frequent on larvae exposed to oak forest soil.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. bassiana]
<Options>: A: beauveria pseudobassiana
B: burkholderia insecticola (aka caballeronia insecticola)
C: beauveria bassiana (beauveria bassiana var. bassiana) (aka beauveria bassiana)
D: bassia diffusa (aka chenolea diffusa)
E: blakistonia bassi
F: None of the above. | [C] |
<Instruct>: Given the context 'M. anisopliae was significantly more frequent on larvae exposed to agricultural soil.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. anisopliae]
<Options>: A: metarhizium majus (metarhizium anisopliae var. majus) (aka metarhizium majus)
B: penicillium anisopliae (aka metarhizium anisopliae)
C: metarhizium anisopliae brip 53293
D: metarhizium anisopliae ma10
E: marrubium anisodon
F: None of the above. | [B] |
<Instruct>: Given the context 'Strains were tested for their infectivity against Cuban laurel thrips, Gynaikothrips uzeli Zimmerman (Thysanoptera: Phlaeothripidae) and the greenhouse whitefly, Trialeurodes vaporariorum (Westwood) (Hemiptera: Aleyrodidae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cuban laurel thrips; greenhouse whitefly; trialeurodes vaporariorum]
<Options>: A: agaricus vaporarius
B: corn earworm (aka helicoverpa zea)
C: trialeurodes
D: thrips nigropilosus
E: greenhouse whitefly (aka trialeurodes vaporariorum)
F: thrips ulicis (aka odontothrips ulicis)
G: cymindis vaporariorum
H: cuban racer (aka cubophis cantherigerus)
I: thrips decens
J: trialeurodes variabilis (aleurodes variabilis) (aka trialeurodes variabilis)
K: erysiphe tabaci (aka golovinomyces tabaci)
L: tylenchulus graminis
M: thraululus parvulus (aka choroterpes parvula)
N: bemisia tabaci (sweet potato whitefly) (aka bemisia tabaci)
O: None of the above. | [O; E; E] |
<Instruct>: Given the context 'Strains were tested for their infectivity against Cuban laurel thrips, Gynaikothrips uzeli Zimmerman (Thysanoptera: Phlaeothripidae) and the greenhouse whitefly, Trialeurodes vaporariorum (Westwood) (Hemiptera: Aleyrodidae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cuban laurel thrips; greenhouse whitefly; trialeurodes vaporariorum]
<Options>: A: botrylloides tyreus
B: trialeurodes variabilis (aleurodes variabilis) (aka trialeurodes variabilis)
C: thrips
D: grain thrips (aka limothrips cerealium)
E: greenhouse whitefly (aka trialeurodes vaporariorum)
F: tylenchulus graminis
G: trialeurodes
H: tomato fruitworm (aka helicoverpa zea)
I: tabanus virgulatus
J: cymindis vaporariorum
K: black horsefly (aka tabanus atratus)
L: thrips levatus
M: thrips physapus (thrips fusca) (aka thrips physapus)
N: thrips tabaci
O: None of the above. | [O; E; E] |
<Instruct>: Given the context 'Strains were tested for their infectivity against Cuban laurel thrips, Gynaikothrips uzeli Zimmerman (Thysanoptera: Phlaeothripidae) and the greenhouse whitefly, Trialeurodes vaporariorum (Westwood) (Hemiptera: Aleyrodidae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cuban laurel thrips; greenhouse whitefly; trialeurodes vaporariorum]
<Options>: A: trialeurodes variabilis (aleurodes variabilis) (aka trialeurodes variabilis)
B: thrinaconyx fumosa (aka thrinaconyx fumosus)
C: tylenchulus graminis
D: greenhouse whitefly (aka trialeurodes vaporariorum)
E: sheep blowfly (aka lucilia sericata)
F: rice weevil (aka sitophilus oryzae)
G: chinese egret (aka egretta eulophotes)
H: corn earworm (aka helicoverpa zea)
I: myrmechixenus vaporariorum
J: thrips levatus
K: thraululus parvulus (aka choroterpes parvula)
L: thrips major
M: trialeurodes vaporariorum bunya-like virus
N: thrips cerealium (aka limothrips cerealium)
O: None of the above. | [O; D; D] |
<Instruct>: Given the context 'B. bassiana isolates caused the highest mortality on thrips (some causing 88% mortality after 6 days); both fungal species caused similarly high mortality levels against whiteflies (75%) after 6 days.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. bassiana]
<Options>: A: begonia boisiana
B: blakistonia bassi
C: monarda bradburiana
D: beauveria bassiana (beauveria bassiana var. bassiana) (aka beauveria bassiana)
E: caballeronia insecticola (burkholderia insecticola) (aka caballeronia insecticola)
F: None of the above. | [D] |
<Instruct>: Given the context 'Large amounts of germplasm of entomopathogenic fungi, fundamentally B. bassiana and M. anisopliae, exist in the habitats sampled; pathogenicity varied among strains, and some strains possessed significant virulence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. bassiana; m. anisopliae]
<Options>: A: beauveria bassiana d1-5
B: bassia iranica (aka bassia odontoptera)
C: entomophthora anisopliae (aka metarhizium anisopliae)
D: caballeronia insecticola (burkholderia insecticola) (aka caballeronia insecticola)
E: metarhizium anisopliae polymycovirus 1
F: beauveria bassiana var. bassiana (aka beauveria bassiana)
G: metarhizium megapomponiae
H: boraria infesta
I: metarhizium anisopliae ma10
J: metarhizium neoanisopliae
K: None of the above. | [F; C] |
<Instruct>: Given the context 'Large amounts of germplasm of entomopathogenic fungi, fundamentally B. bassiana and M. anisopliae, exist in the habitats sampled; pathogenicity varied among strains, and some strains possessed significant virulence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. bassiana; m. anisopliae]
<Options>: A: metarhizium megapomponiae
B: spicaria bassiana (aka beauveria bassiana)
C: caballeronia insecticola (burkholderia insecticola) (aka caballeronia insecticola)
D: isaria anisopliae (aka metarhizium anisopliae)
E: metarhizium anisopliae brip 53293
F: mycoplasma fermentans (aka mycoplasmopsis fermentans)
G: bassiana
H: metarhizium anisopliae brip 53284
I: monarda bradburiana
J: beauveria pseudobassiana
K: None of the above. | [B; D] |
<Instruct>: Given the context 'Transcript analysis and comparative evaluation of shaker and slowmo gene homologues from the European corn borer, Ostrinia nubilalis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [european corn borer; ostrinia nubilalis]
<Options>: A: trichia nubila
B: sugarcane borer (aka diatraea saccharalis)
C: astatotilapia nubila (aka haplochromis nubilus)
D: english grain aphid (aka sitobion avenae)
E: tupelo borer (aka aegomorphus morrisi)
F: european corn borer (aka ostrinia nubilalis)
G: striped rice borer (aka chilo suppressalis)
H: ostrinia orientalis
I: otiorhynchus nubilus
J: None of the above. | [F; F] |
<Instruct>: Given the context 'Transcript analysis and comparative evaluation of shaker and slowmo gene homologues from the European corn borer, Ostrinia nubilalis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [european corn borer; ostrinia nubilalis]
<Options>: A: neosphaleroptera nubilana (tortrix nubilana) (aka neosphaleroptera nubilana)
B: ostrinia orientalis
C: nephodia nubilaria
D: sugarcane borer (aka diatraea saccharalis)
E: agrotera citrina
F: european corn borer (aka ostrinia nubilalis)
G: lesser grain borer (aka rhyzopertha dominica)
H: tamarind pod-borer (aka sitophilus linearis)
I: otiorhynchus nubilus
J: None of the above. | [F; F] |
<Instruct>: Given the context 'Transcript analysis and comparative evaluation of shaker and slowmo gene homologues from the European corn borer, Ostrinia nubilalis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [european corn borer; ostrinia nubilalis]
<Options>: A: ostrinia orientalis
B: nephodia nubilaria
C: otiorhynchus nubilus
D: sugarcane borer (aka diatraea saccharalis)
E: neosphaleroptera nubilana (tortrix nubilana) (aka neosphaleroptera nubilana)
F: lesser grain borer (aka rhyzopertha dominica)
G: tamarind pod-borer (aka sitophilus linearis)
H: agrotera citrina
I: None of the above. | [I; I] |
<Instruct>: Given the context 'Homologues of the Drosophila behaviour-linked genes shaker (shkr) and slowmo (slmo) were identified from Ostrinia nubilalis (Lepidoptera: Crambidae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ostrinia nubilalis]
<Options>: A: oxytenis nubila
B: stericta nubilalis (aka salma nubilalis)
C: parascutigera nubila
D: schistostege nubilaria
E: pyralis nubilalis (aka ostrinia nubilalis)
F: None of the above. | [E] |
<Instruct>: Given the context 'Marek's disease virus type 1 microRNA miR-M3 suppresses cisplatin-induced apoptosis by targeting Smad2 of the transforming growth factor beta signal pathway.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [marek's disease virus type 1]
<Options>: A: marek's disease herpesvirus (aka gallid alphaherpesvirus 2)
B: gallid herpesvirus 1 (serotype 2) (aka marek's disease virus serotype 2 mdv2)
C: gallid alphaherpesvirus 3 (marek's disease herpesvirus 2) (aka gallid alphaherpesvirus 3)
D: marek's disease gammaherpesvirus mkt-1
E: mardivirus (marek's disease-like viruses) (aka mardivirus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Viruses cause about 15% of the cancers that are still the leading causes of human mortality.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: human louse (aka pediculus humanus)
B: homo (humans) (aka homo)
C: neanderthal man (aka homo sapiens neanderthalensis)
D: human (aka homo sapiens)
E: human body louse (aka pediculus humanus corporis)
F: None of the above. | [D] |
<Instruct>: Given the context 'The present study has attempted to investigate the effects of the microRNAs (miRNAs) encoded by Marek's disease virus 1 (MDV1), a chicken herpesvirus causing acute T-cell lymphomas and solid visceral tumors in chickens, on anti-cancer drug-induced apoptosis and identify the targets of the miRNAs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [marek's disease virus 1; mdv1; chicken; chickens]
<Options>: A: marten adenovirus type 1
B: marek's disease gammaherpesvirus mkt-1
C: gallid alphaherpesvirus 2 (marek's disease virus serotype 1 mdv-1) (aka gallid alphaherpesvirus 2)
D: gallorhynchus
E: human mastadenovirus 1 (aka human adenovirus 1)
F: marek's disease-like viruses (aka mardivirus)
G: chicken (aka gallus gallus)
H: gallus sonneratii (gray junglefowl) (aka gallus sonneratii)
I: landfowls (aka galliformes)
J: green junglefowl (aka gallus varius)
K: gallid herpesvirus 1 (serotype 2) (aka marek's disease virus serotype 2 mdv2)
L: marek's disease virus type 2 (aka gallid alphaherpesvirus 3)
M: marr virus
N: gallus
O: middleburg virus (aka middelburg virus)
P: gallasellus
Q: arilus gallus
R: None of the above. | [C; C; G; G] |
<Instruct>: Given the context 'The present study has attempted to investigate the effects of the microRNAs (miRNAs) encoded by Marek's disease virus 1 (MDV1), a chicken herpesvirus causing acute T-cell lymphomas and solid visceral tumors in chickens, on anti-cancer drug-induced apoptosis and identify the targets of the miRNAs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [marek's disease virus 1; mdv1; chicken; chickens]
<Options>: A: medway virus
B: marten adenovirus type 1
C: gallasellus
D: gallid herpesvirus 1 (serotype 2) (aka marek's disease virus serotype 2 mdv2)
E: murine adenovirus 1 (murine adenovirus type 1 mav1) (aka murine adenovirus 1)
F: gallacoccus
G: marek's disease virus mdv (aka gallid alphaherpesvirus 2)
H: marek's disease gammaherpesvirus mkt-1
I: mardivirus (marek's disease-like viruses) (aka mardivirus)
J: arilus gallus
K: marr virus
L: wild turkey (aka meleagris gallopavo)
M: gallus domesticus (aka gallus gallus)
N: gallorhynchus
O: common turkey (aka meleagris gallopavo)
P: gallus gallus philippensis (aka gallus gallus gallus)
Q: gallid alphaherpesvirus 3 (marek's disease herpesvirus 2) (aka gallid alphaherpesvirus 3)
R: None of the above. | [G; G; M; M] |
<Instruct>: Given the context 'The present study has attempted to investigate the effects of the microRNAs (miRNAs) encoded by Marek's disease virus 1 (MDV1), a chicken herpesvirus causing acute T-cell lymphomas and solid visceral tumors in chickens, on anti-cancer drug-induced apoptosis and identify the targets of the miRNAs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [marek's disease virus 1; mdv1; chicken; chickens]
<Options>: A: arilus gallus
B: mdv1 (aka maryland calicivirus 1) (aka maryland calicivirus 1)
C: marek's disease gammaherpesvirus mkt-1
D: gallus domesticus (aka gallus gallus)
E: meleagris gallopavo (common turkey) (aka meleagris gallopavo)
F: gallasellus
G: gallid alphaherpesvirus 3 (marek's disease herpesvirus 2) (aka gallid alphaherpesvirus 3)
H: grey junglefowl (aka gallus sonneratii)
I: landfowls (aka galliformes)
J: gallus sonneratii (gray junglefowl) (aka gallus sonneratii)
K: mareks disease virus (aka gallid alphaherpesvirus 2)
L: gallacoccus
M: murine adenovirus type 1 mav1 (aka murine adenovirus 1)
N: marten adenovirus type 1
O: mardivirus (marek's disease-like viruses) (aka mardivirus)
P: gallus lafayettii (ceylon junglefowl) (aka gallus lafayettii)
Q: gallid herpesvirus 1 (serotype 2) (aka marek's disease virus serotype 2 mdv2)
R: medway virus
S: None of the above. | [K; K; D; D] |
<Instruct>: Given the context 'The present study has attempted to investigate the effects of the microRNAs (miRNAs) encoded by Marek's disease virus 1 (MDV1), a chicken herpesvirus causing acute T-cell lymphomas and solid visceral tumors in chickens, on anti-cancer drug-induced apoptosis and identify the targets of the miRNAs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [marek's disease virus 1; mdv1; chicken; chickens]
<Options>: A: human mastadenovirus 1 (aka human adenovirus 1)
B: landfowls (aka galliformes)
C: marek's disease herpesvirus 1 (aka gallid alphaherpesvirus 2)
D: marten adenovirus type 1
E: chickens (aka gallus gallus)
F: marek's disease-like viruses (aka mardivirus)
G: gallorhynchus
H: gallus gallus philippensis (aka gallus gallus gallus)
I: gallus gallus gallus (gallus gallus philippensis) (aka gallus gallus gallus)
J: gallus
K: marek's disease herpesvirus 2 (aka gallid alphaherpesvirus 3)
L: marek's disease gammaherpesvirus mkt-1
M: mdv1 (aka maryland calicivirus 1) (aka maryland calicivirus 1)
N: medway virus
O: arilus gallus
P: gallus lafayettii (ceylon junglefowl) (aka gallus lafayettii)
Q: gallid herpesvirus 1 (serotype 2) (aka marek's disease virus serotype 2 mdv2)
R: None of the above. | [C; C; E; E] |
<Instruct>: Given the context 'The results showed that of the total 14 miRNAs encoded by MDV1, MDV1-miR-M3 significantly promoted cell survival under treatment with cisplatin, a widely used chemotherapy drug.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mdv1]
<Options>: A: maryland virus 1 (aka maryland calicivirus 1)
B: middleburg virus (aka middelburg virus)
C: marek disease virus type 1 (aka gallid alphaherpesvirus 2)
D: marten adenovirus type 1
E: murine adenovirus 1 (murine adenovirus type 1 mav1) (aka murine adenovirus 1)
F: None of the above. | [C] |
<Instruct>: Given the context 'The results showed that of the total 14 miRNAs encoded by MDV1, MDV1-miR-M3 significantly promoted cell survival under treatment with cisplatin, a widely used chemotherapy drug.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mdv1]
<Options>: A: marten adenovirus type 1
B: maryland virus 1 (aka maryland calicivirus 1)
C: murine adenovirus 1 (murine adenovirus type 1 mav1) (aka murine adenovirus 1)
D: middleburg virus (aka middelburg virus)
E: None of the above. | [E] |
<Instruct>: Given the context 'MDV1-miR-M3 suppressed cisplatin-induced apoptosis by directly downregulating expression at the protein but not the mRNA level of Smad2, a critical component in the transforming growth factor Beta signal pathway.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mdv1]
<Options>: A: marek's disease virus type 1 (aka gallid alphaherpesvirus 2)
B: human mastadenovirus 1 (aka human adenovirus 1)
C: medway virus
D: middelburg virus (middleburg virus) (aka middelburg virus)
E: mdv1 (aka maryland calicivirus 1) (aka maryland calicivirus 1)
F: None of the above. | [A] |
<Instruct>: Given the context 'Differentially expressed genes in silkworm cell cultures in response to infection by Wolbachia and Cardinium endosymbionts.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [silkworm]
<Options>: A: bombyx catax (aka eriogaster catax)
B: bombyx mori (domestic silkworm) (aka bombyx mori)
C: beet armyworm (aka spodoptera exigua)
D: apis terrestris (aka bombus terrestris)
E: apis hortorum (aka bombus hortorum)
F: None of the above. | [B] |
<Instruct>: Given the context 'Here we studied differentially expressed genes in Wolbachia- and Cardinium-infected Bm-aff3 silkworm cells using a silkworm microarray.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [silkworm]
<Options>: A: bombyx
B: silk moth (aka bombyx mori)
C: apis hortorum (aka bombus hortorum)
D: apis terrestris (aka bombus terrestris)
E: wild silkworm (aka bombyx mandarina)
F: None of the above. | [B] |
<Instruct>: Given the context 'We present the characterization of the PEVK domain in two dragonflies and in human lice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human lice]
<Options>: A: body lice (aka pediculus humanus)
B: guinea pig lice (aka gyropidae)
C: pediculidae (primate body lice) (aka pediculidae)
D: human head lice (aka pediculus humanus capitis)
E: licinus
F: None of the above. | [A] |
<Instruct>: Given the context 'T cell-mediated protection against lethal 2009 pandemic H1N1 influenza virus infection in a mouse model.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lethal 2009 pandemic h1n1 influenza virus]
<Options>: A: human influenza a virus (aka influenza a virus)
B: influenza b virus (b/california/108/2015)
C: influenza a virus (a/england/751/2009(h1n1))
D: influenza a virus (a/michigan/07/2009(h1n1))
E: influenza a virus (a/louisiana/07/2009(h1n1))
F: None of the above. | [A] |
<Instruct>: Given the context 'Genetic mutation and reassortment of influenza virus gene segments, in particular those of hemagglutinin (HA) and neuraminidase (NA), that lead to antigenic drift and shift are the major strategies for influenza virus to escape preexisting immunity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [influenza virus]
<Options>: A: influenza virus type b (aka influenza b virus)
B: influenzavirus (aka unidentified influenza virus)
C: flucv (aka influenza c virus)
D: human influenza a virus (aka influenza a virus)
E: swine influenza virus
F: None of the above. | [B] |
<Instruct>: Given the context 'The most recent example of such phenomena is the first pandemic of H1N1 influenza of the 21st century, which started in 2009.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1n1 influenza]
<Options>: A: influenza virus type b (aka influenza b virus)
B: influenzavirus a (aka alphainfluenzavirus)
C: human influenza a virus (aka influenza a virus)
D: influenza c viruses (aka influenza c virus)
E: influenza a virus (a/china)
F: None of the above. | [C] |
<Instruct>: Given the context 'Cross-reactive antibodies raised against H1N1 viruses circulating before 1930 show protective activity against the 2009 pandemic virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1n1 viruses; 2009 pandemic virus]
<Options>: A: influenza a virus (a/singapore/07/2009(h1n1))
B: influenzavirus c (aka gammainfluenzavirus)
C: influenza virus type a (aka influenza a virus)
D: influenzavirus b (aka betainfluenzavirus)
E: influenza b virus (b/california/11/2011)
F: fluruvirus
G: influenza b virus (b/california/01/2011)
H: influenza a virus (a/england/759/2009(h1n1))
I: h1n1 swine influenza virus
J: None of the above. | [C; C] |
<Instruct>: Given the context 'Cross-reactive antibodies raised against H1N1 viruses circulating before 1930 show protective activity against the 2009 pandemic virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1n1 viruses; 2009 pandemic virus]
<Options>: A: influenza a virus (a/philippines/2009/2009(h1n1))
B: influenza a virus (a/england/759/2009(h1n1))
C: h1n1 swine influenza virus
D: influenza b virus (b/california/01/2015)
E: influenza c virus (influenza virus type c) (aka influenza c virus)
F: influenzavirus a (aka alphainfluenzavirus)
G: influenzavirus b (aka betainfluenzavirus)
H: influenza virus type a (aka influenza a virus)
I: influenza b virus (b/wuhan/7/2009)
J: None of the above. | [H; H] |
<Instruct>: Given the context 'To explore the protection mechanisms in vivo, we primed mice with H1 and H3 influenza virus isolates and rechallenged them with a virus derived from the 2009 H1N1 A/CA/04/09 virus, named CA/E3/09.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1; h3 influenza virus; 2009 h1n1 a/ca/04/09 virus]
<Options>: A: h1n7 subtype
B: influenza a virus (a/california/07-00009/2009(h1n1))
C: h13n1 subtype
D: influenza a virus (a/california/vrdl4/2009(h1n1))
E: influenzavirus c (aka gammainfluenzavirus)
F: h1n9 subtype
G: influenza a virus (a/california/04/2009(h1n1))
H: h10n1 subtype
I: influenza b virus (influenza virus type b) (aka influenza b virus)
J: influenza a virus (a/california/09/2009(h1n1))
K: influenza a virus (human influenza a virus) (aka influenza a virus)
L: influenza a virus (a/china)
M: h1n1 swine influenza virus
N: h11n4 subtype
O: influenza a virus (a/california/09/2010(h1n1))
P: None of the above. | [P; K; K] |
<Instruct>: Given the context 'To explore the protection mechanisms in vivo, we primed mice with H1 and H3 influenza virus isolates and rechallenged them with a virus derived from the 2009 H1N1 A/CA/04/09 virus, named CA/E3/09.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1; h3 influenza virus; 2009 h1n1 a/ca/04/09 virus]
<Options>: A: influenzavirus a (aka alphainfluenzavirus)
B: influenza a virus (a/california/7/2009(h1n1))
C: influenza a virus (a/california/07-00005/2009(h1n1))
D: h10n5 subtype
E: flubv (aka influenza b virus)
F: h1n6 subtype
G: h11n1 subtype
H: h10n4 subtype
I: influenza a virus (a/california/vrdl4/2009(h1n1))
J: influenza a virus (a/california/07-00001/2009(h1n1))
K: influenza c viruses (aka influenza c virus)
L: influenza a virus (a/colorado/07/2009(h1n1))
M: h1n3 subtype
N: influenza a virus (human influenza a virus) (aka influenza a virus)
O: influenzavirus c (aka gammainfluenzavirus)
P: None of the above. | [P; N; N] |
<Instruct>: Given the context 'To explore the protection mechanisms in vivo, we primed mice with H1 and H3 influenza virus isolates and rechallenged them with a virus derived from the 2009 H1N1 A/CA/04/09 virus, named CA/E3/09.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1; h3 influenza virus; 2009 h1n1 a/ca/04/09 virus]
<Options>: A: h1n2 (aka h1n2 subtype) (aka h1n2 subtype)
B: influenza a virus (a/colorado/07/2009(h1n1))
C: h10n5 subtype
D: h1n6 subtype
E: influenza a virus (a/california/11/2009(h1n1))
F: h3n8 equine influenza virus (aka equine influenza virus h3n8)
G: influenza a virus (a/california/ma-07/2009(h1n1))
H: h11n1 subtype
I: human influenza a virus (aka influenza a virus)
J: influenzavirus a (aka alphainfluenzavirus)
K: influenza b virus (influenza virus type b) (aka influenza b virus)
L: h10n4 subtype
M: influenza a virus (a/california/07/2009(h1n1))
N: h1n1 swine influenza virus
O: influenza a virus (a/australia/4/2009(h1n1))
P: None of the above. | [P; I; I] |
<Instruct>: Given the context 'To explore the protection mechanisms in vivo, we primed mice with H1 and H3 influenza virus isolates and rechallenged them with a virus derived from the 2009 H1N1 A/CA/04/09 virus, named CA/E3/09.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1; h3 influenza virus; 2009 h1n1 a/ca/04/09 virus]
<Options>: A: h3n8 equine influenza virus (aka equine influenza virus h3n8)
B: influenza a virus (a/california/ma-07/2009(h1n1))
C: influenza b virus (influenza virus type b) (aka influenza b virus)
D: influenza a virus (a/california/07/2009(h1n1))
E: h1n2 (aka h1n2 subtype) (aka h1n2 subtype)
F: influenza a virus (a/colorado/07/2009(h1n1))
G: h1n1 swine influenza virus
H: influenzavirus a (aka alphainfluenzavirus)
I: influenza a virus (a/australia/4/2009(h1n1))
J: h11n1 subtype
K: h10n4 subtype
L: influenza a virus (a/california/11/2009(h1n1))
M: h10n5 subtype
N: h1n6 subtype
O: None of the above. | [O; O; O] |
<Instruct>: Given the context 'We found that priming with influenza viruses of both H1 and H3 homo- and heterosubtypes protected against lethal CA/E3/09 virus challenge.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1]
<Options>: A: h11n2 subtype
B: h13n1 subtype
C: h1n5 subtype
D: h1n9 subtype
E: h1n2 subtype (h1n2 (aka h1n2 subtype))
F: None of the above. | [F] |
<Instruct>: Given the context 'Taken together, these results indicate that cross-reactive T cells established after initial priming with distally related viruses can be a vital component for prevention of disease and control of pandemic H1N1 influenza virus infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pandemic h1n1 influenza virus]
<Options>: A: influenza virus type a (aka influenza a virus)
B: influenza virus (aka unidentified influenza virus)
C: swine influenza virus
D: influenza a virus (a/california/07/2010(h1n1))
E: influenza a virus (a/china)
F: None of the above. | [A] |
<Instruct>: Given the context 'Dermamoeba algensis n. sp. (Amoebozoa, Dermamoebidae): an algivorous lobose amoeba with complex cell coat and unusual feeding mode.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dermamoeba algensis n. sp.]
<Options>: A: acanthamoeba griffini
B: entamoeba sp.
C: entamoeba muris
D: dermamoeba
E: dermamoeba algensis
F: None of the above. | [E] |
<Instruct>: Given the context 'In this paper we describe a third species of this genus, D. algensis n. sp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [d. algensis n. sp.]
<Options>: A: actinomadura algeriensis
B: nocardiopsis algeriensis
C: dermamoeba algensis
D: daphnia ambigua
E: daphnia muddensis
F: None of the above. | [C] |
<Instruct>: Given the context 'Accordingly, D. algensis has a wide range of salinity tolerance.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [d. algensis]
<Options>: A: drepanepteryx algida
B: hedysarum algidum
C: dermamoeba algensis
D: daphnia oregonensis
E: devosia algicola
F: None of the above. | [C] |
<Instruct>: Given the context 'Clinical management of Staphylococcus aureus bacteraemia.
Staphylococcus aureus bacteraemia is one of the most common serious bacterial infections worldwide.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [staphylococcus aureus]
<Options>: A: streptomyces aureus
B: staphylococcus haemolyticus
C: micrococcus pyogenes (aka staphylococcus aureus)
D: staphylococcus xylosus
E: agaribacillus aureus
F: None of the above. | [C] |
<Instruct>: Given the context 'To date, fewer than 1500 patients with S aureus bacteraemia have been recruited to 16 controlled trials of antimicrobial therapy.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s aureus]
<Options>: A: staphylococcus haemolyticus
B: agaribacillus aureus
C: staphylococcus aureus strain pa (aka staphylococcus aureus pa)
D: streptomyces aureus
E: staphylococcus pyogenes aureus (aka staphylococcus aureus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Here, we propose and review ten unanswered clinical questions commonly posed by those managing S aureus bacteraemia.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s aureus]
<Options>: A: aurococcus (aka staphylococcus)
B: streptomyces aureus
C: micrococcus pyogenes (aka staphylococcus aureus)
D: staphylococcus equorum
E: 'staphylococcus faecalis' (aka staphylococcus faecalis)
F: None of the above. | [C] |
<Instruct>: Given the context 'Our findings define the major areas of uncertainty in the management of S aureus bacteraemia and highlight just two key principles.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s aureus]
<Options>: A: streptococcus hemolyticus (aka streptococcus pyogenes)
B: micrococcus aureus (aka staphylococcus aureus)
C: aurococcus (aka staphylococcus)
D: staphylococcus equorum
E: staphylococcus haemolyticus
F: None of the above. | [B] |
<Instruct>: Given the context 'Beyond this, the best drugs, dose, mode of delivery, and duration of therapy are uncertain, a situation compounded by emerging S aureus strains that are resistant to old and new antibiotics.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s aureus]
<Options>: A: streptomyces aureus
B: staphylococcus (aurococcus) (aka staphylococcus)
C: staphylococcus aureus a8799
D: staphylococcus equorum
E: micrococcus aureus (aka staphylococcus aureus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Beyond this, the best drugs, dose, mode of delivery, and duration of therapy are uncertain, a situation compounded by emerging S aureus strains that are resistant to old and new antibiotics.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s aureus]
<Options>: A: streptomyces aureus
B: staphylococcus equorum
C: staphylococcus aureus a8799
D: staphylococcus (aurococcus) (aka staphylococcus)
E: None of the above. | [E] |
<Instruct>: Given the context 'Key data gaps include incidence and case-fatality ratios for all ages, the contribution of influenza towards admission of adults to hospital for ARI, representative seasonality data, economic burden, and the interaction of influenza with prevalent disorders in Africa, such as malaria, HIV, and malnutrition.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv]
<Options>: A: human immunodeficiency virus 1 (human immunodeficiency virus type 1, hiv-1) (aka human immunodeficiency virus 1)
B: human immunodeficiency virus 3 (hiv (aka human immunodeficiency virus 3))
C: aids virus (aka human immunodeficiency virus 2)
D: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
E: None of the above. | [D] |
<Instruct>: Given the context 'Association of TRIM22 with the type 1 interferon response and viral control during primary HIV-1 infection.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
B: hiv-1 (aka human immunodeficiency virus 1)
C: human immunodeficiency virus type 1 (kb-1 isolate)
D: None of the above. | [B] |
<Instruct>: Given the context 'Type 1 interferons (IFNs) induce the expression of the tripartite interaction motif (TRIM) family of E3 ligases, but the contribution of these antiviral factors to HIV pathogenesis is not completely understood.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv]
<Options>: A: aids virus (aka human immunodeficiency virus 2)
B: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
C: hiv (aka human immunodeficiency virus 3) (aka human immunodeficiency virus 3)
D: human immunodeficiency virus type-1 hiv-1 (aka human immunodeficiency virus 1)
E: None of the above. | [D] |
<Instruct>: Given the context 'We hypothesized that the increased expression of select type 1 IFN and TRIM isoforms is associated with a significantly lower likelihood of HIV-1 acquisition and viral control during primary HIV-1 infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: human immunodeficiency virus type 1 (kb-1 isolate)
B: aids virus (aka human immunodeficiency virus 1)
C: aids virus (aka human immunodeficiency virus)
D: None of the above. | [B] |
<Instruct>: Given the context 'We measured IFN-alpha, IFN-Beta, myxovirus resistance protein A (MxA), human TRIM5alpha (huTRIM5alpha), and TRIM22 mRNA levels in peripheral blood mononuclear cells (PBMCs) of high-risk, HIV-1-uninfected participants and HIV-1-positive study participants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; hiv-1]
<Options>: A: pediculus humanus corporis (pediculus humanus humanus) (aka pediculus humanus corporis)
B: human immunodeficiency virus type 1 (kb-1 isolate)
C: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
D: lav-1 (aka human immunodeficiency virus 1)
E: macrobiotus sapiens
F: gymnopleurus humanus
G: great apes (aka hominidae)
H: human (aka homo sapiens)
I: None of the above. | [H; D] |
<Instruct>: Given the context 'We measured IFN-alpha, IFN-Beta, myxovirus resistance protein A (MxA), human TRIM5alpha (huTRIM5alpha), and TRIM22 mRNA levels in peripheral blood mononuclear cells (PBMCs) of high-risk, HIV-1-uninfected participants and HIV-1-positive study participants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; hiv-1]
<Options>: A: human immunodeficiency virus type 1 (kb-1 isolate)
B: neandertal (aka homo sapiens neanderthalensis)
C: human immunodeficiency virus-1 hiv-1 (aka human immunodeficiency virus 1)
D: homo sapiens (human) (aka homo sapiens)
E: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
F: human louse (aka pediculus humanus)
G: great apes (aka hominidae)
H: macrobiotus sapiens
I: None of the above. | [D; C] |
<Instruct>: Given the context 'HIV-1-positive participants had higher levels of IFN-Beta (P = 0.0005), MxA (P = 0.007), and TRIM22 (P = 0.01) and lower levels of huTRIM5alpha (P < 0.001) than did HIV-1-negative participants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
B: hiv1 (aka human immunodeficiency virus 1) (aka human immunodeficiency virus 1)
C: human immunodeficiency virus type 1 (kb-1 isolate)
D: None of the above. | [B] |
<Instruct>: Given the context 'In vitro studies revealed that HIV infection induced TRIM22 expression in PBMCs obtained from HIV-negative donors.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv]
<Options>: A: hiv (aka human immunodeficiency virus 3) (aka human immunodeficiency virus 3)
B: aids virus (aka human immunodeficiency virus 2)
C: hiv1 (aka human immunodeficiency virus 1) (aka human immunodeficiency virus 1)
D: aids virus (aka human immunodeficiency virus)
E: None of the above. | [C] |
<Instruct>: Given the context 'In vitro studies revealed that HIV infection induced TRIM22 expression in PBMCs obtained from HIV-negative donors.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv]
<Options>: A: aids virus (aka human immunodeficiency virus)
B: hiv (aka human immunodeficiency virus 3) (aka human immunodeficiency virus 3)
C: aids virus (aka human immunodeficiency virus 2)
D: None of the above. | [D] |
<Instruct>: Given the context 'Stable TRIM22 knockdown resulted in increased HIV-1 particle release and replication in Jurkat reporter cells.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: human immunodeficiency virus type 1 (kb-1 isolate)
B: aids virus (aka human immunodeficiency virus)
C: human immunodeficiency virus type 1 hiv 1 (aka human immunodeficiency virus 1)
D: None of the above. | [C] |
<Instruct>: Given the context 'Interbacterial macromolecular transfer by the Campylobacter fetus subsp. venerealis type IV secretion system.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [campylobacter fetus subsp. venerealis]
<Options>: A: campylobacter fetus subsp. venerealis cfvi02/298
B: campylobacter fetus subsp. venerealis cfvi03/596
C: campylobacter fetus subsp. venerealis cfvi03/293
D: campylobacter fetus subsp. venerealis ccug 33872
E: vibrio fetus (aka campylobacter fetus)
F: None of the above. | [E] |
<Instruct>: Given the context 'We report here the first demonstration of intra- and interspecies conjugative plasmid DNA transfer for Campylobacter fetus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [campylobacter fetus]
<Options>: A: campylobacter ovis (aka campylobacter vicugnae)
B: campylobacter felis
C: campylobacter
D: vibrio fetus (aka campylobacter fetus)
E: campylobacter suis
F: None of the above. | [D] |
<Instruct>: Given the context 'Gene regions carried by a Campylobacter coli plasmid were identified that are sufficient for conjugative mobilization to Escherichia coli and C. fetus recipients.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [campylobacter coli; escherichia coli; c. fetus]
<Options>: A: cryptosporidium cuniculus
B: campylobacter coli 1957
C: chordifex abortivus (restio abortivus) (aka chordifex abortivus)
D: campylobacter hyoilei (aka campylobacter coli)
E: campylobacter
F: escherichia coli c
G: campylobacter concisus
H: escherichia freundii (aka citrobacter freundii)
I: cryptosporidium felis
J: campylobacter fetus (spirillum fetus) (aka campylobacter fetus)
K: escherichia
L: escherichia coli 9.1796
M: chorizococcus
N: bacillus coli (aka escherichia coli)
O: None of the above. | [D; N; J] |
<Instruct>: Given the context 'Gene regions carried by a Campylobacter coli plasmid were identified that are sufficient for conjugative mobilization to Escherichia coli and C. fetus recipients.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [campylobacter coli; escherichia coli; c. fetus]
<Options>: A: campylobacter concisus
B: campylobacter fetus (spirillum fetus) (aka campylobacter fetus)
C: campylobacter hyoilei (aka campylobacter coli)
D: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
E: vibrio coli (aka campylobacter coli)
F: chamaeleo bifidus (aka furcifer bifidus)
G: enterobacter aerogenes (aka klebsiella aerogenes)
H: afrocloetus
I: boletus favus (aka coriolopsis gallica)
J: campylobacter lawrenceae ('campylobacter lawrenceae ') (aka campylobacter lawrenceae)
K: escherichia coli nissle 1917 (escherichia coli strain nissle 1917) (aka escherichia coli nissle 1917)
L: campylobacter anatolicus
M: campylobacter ovis (aka campylobacter vicugnae)
N: campylobacter fetus fetus (aka campylobacter fetus subsp. fetus)
O: bacterium coli (aka escherichia coli)
P: None of the above. | [C; O; B] |
<Instruct>: Given the context 'Gene regions carried by a Campylobacter coli plasmid were identified that are sufficient for conjugative mobilization to Escherichia coli and C. fetus recipients.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [campylobacter coli; escherichia coli; c. fetus]
<Options>: A: campylobacter fetus (spirillum fetus) (aka campylobacter fetus)
B: escherichia coli nissle 1917 (escherichia coli strain nissle 1917) (aka escherichia coli nissle 1917)
C: vibrio jejuni (aka campylobacter jejuni)
D: campylobacter suis
E: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
F: cichlidogyrus gallus
G: campylobacter coli 1957
H: campylobacter jejuni-like bacterium
I: bacterium coli (aka escherichia coli)
J: cryptosporidium bovis
K: enterobacter aerogenes (aka klebsiella aerogenes)
L: chorioptes ovis (aka chorioptes bovis)
M: cryptosporidium cuniculus
N: escherichia freundii (aka citrobacter freundii)
O: campylobacter coli (campylobacter hyoilei) (aka campylobacter coli)
P: None of the above. | [O; I; A] |
<Instruct>: Given the context 'Efficient DNA transfer involves the virB9 and virD4 genes of the type IV bacterial secretion system encoded by a pathogenicity island of C. fetus subsp. venerealis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. fetus subsp. venerealis]
<Options>: A: campylobacter fetus subsp. venerealis bv. venerealis
B: campylobacter fetus subsp. testudinum
C: vibrio fetus (aka campylobacter fetus)
D: campylobacter fetus subsp. venerealis bv. intermedius
E: campylobacter fetus subsp. venerealis cfvb10
F: None of the above. | [C] |
<Instruct>: Given the context 'Complementation of these phenotypes from expression constructions based on the promoter of the C. fetus surface antigen protein (sap) locus was temperature dependent, and a temperature regulation of the sap promoter was subsequently confirmed under laboratory conditions.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. fetus]
<Options>: A: chamaeleo bifidus (aka furcifer bifidus)
B: cichlidogyrus gallus
C: chordifex abortivus (restio abortivus) (aka chordifex abortivus)
D: cryptosporidium cuniculus
E: spirillum fetus (aka campylobacter fetus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Gene transfer was sensitive to surface or entry exclusion functions in potential recipient cells carrying IncPalpha plasmid RP4 implying functional relatedness to C. fetus proteins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. fetus]
<Options>: A: campylobacter fetus (spirillum fetus) (aka campylobacter fetus)
B: chorioptes ovis (aka chorioptes bovis)
C: chorizococcus
D: cichlidogyrus gallus
E: cryptosporidium bovis
F: None of the above. | [A] |
<Instruct>: Given the context 'The virB/virD4 locus is also known to be involved in bacterial invasion and killing of cultured human cells in vitro.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: homo (humans) (aka homo)
B: neandertal (aka homo sapiens neanderthalensis)
C: human louse (aka pediculus humanus)
D: macrobiotus sapiens
E: homo sapiens (human) (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Two putative effector proteins carrying an FIC domain conserved in a few bacterial type III and type IV secreted proteins of pathogens were analyzed for secretion by the C. fetus or heterologous conjugative systems.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. fetus]
<Options>: A: cryptosporidium cuniculus
B: chorioptes ovis (aka chorioptes bovis)
C: cixius cunicularius (cicada cunicularius) (aka cixius cunicularius)
D: afrocloetus
E: spirillum fetus (aka campylobacter fetus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Serinicoccus profundi sp. nov., an actinomycete isolated from deep-sea sediment, and emended description of the genus Serinicoccus.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [serinicoccus profundi sp. nov.]
<Options>: A: serinicoccus sediminis
B: sphingomonas profundi
C: serinicoccus sp. s24
D: serinicoccus profundi
E: salenia profundi (aka salenocidaris profundi)
F: None of the above. | [D] |
<Instruct>: Given the context 'A Gram-reaction-positive bacterial strain of the genus Serinicoccus, designated MCCC 1A05965(T), was isolated from a deep-sea (5368 m) sediment of the Indian Ocean.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mccc 1a05965]
<Options>: A: uncultured organism meddcm-oct-s04-c100
B: uncultured organism meddcm-oct-s11-c1587
C: uncultured organism meddcm-oct-s12-c71
D: uncultured archaeon meddcm-oct-s05-c10
E: uncultured organism meddcm-oct-s08-c695
F: None of the above. | [F] |
<Instruct>: Given the context 'Comparison of 16S rRNA gene sequences revealed that the isolate shared 97.6 % sequence similarity with Serinicoccus marinus JC1078(T), the type strain of the only described species of the genus Serinicoccus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [serinicoccus marinus]
<Options>: A: nocardioides marinus
B: serinicoccus marinus
C: amphileptus marinus
D: gelatiniphilus marinus
E: rubricoccus marinus
F: None of the above. | [B] |
<Instruct>: Given the context 'Comparison of 16S rRNA gene sequences revealed that the isolate shared 97.6 % sequence similarity with Serinicoccus marinus JC1078(T), the type strain of the only described species of the genus Serinicoccus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [serinicoccus marinus]
<Options>: A: nocardioides marinus
B: rubricoccus marinus
C: amphileptus marinus
D: gelatiniphilus marinus
E: None of the above. | [E] |
<Instruct>: Given the context 'Other characteristics of strain MCCC 1A05965(T) were consistent with those of the genus Serinicoccus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mccc 1a05965]
<Options>: A: enterobacteriaceae bacterium mcc505
B: uncultured organism meddcm-oct-s12-c54
C: uncultured micrococcus mc5
D: pasteurella aerogenes mccm 01550
E: uncultured organism meddcm-oct-s08-c100
F: None of the above. | [F] |
<Instruct>: Given the context 'Strain MCCC 1A05965(T)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mccc 1a05965]
<Options>: A: uncultured organism meddcm-oct-s08-c695
B: uncultured organism meddcm-oct-s11-c1587
C: uncultured organism meddcm-oct-s12-c71
D: uncultured organism meddcm-oct-s05-c138
E: uncultured prochlorococcus marinus clone hot0m-5c8
F: None of the above. | [F] |
<Instruct>: Given the context '=CGMCC 4.5582(T)) is assigned as the type strain of a novel species, for which the name Serinicoccus profundi sp. nov. is proposed.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [serinicoccus profundi sp. nov]
<Options>: A: serinicoccus
B: serinicoccus hydrothermalis
C: streptomyces profundus
D: serinicoccus profundi
E: serinicoccus sp. 13-12-1
F: None of the above. | [D] |
<Instruct>: Given the context 'High-titer autologous neutralizing antibody responses have been demonstrated during early subtype C human immunodeficiency virus type 1 (HIV-1) infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human immunodeficiency virus type 1; hiv-1]
<Options>: A: human immunodeficiency virus type 1 (new york-5 isolate)
B: human immunodeficiency virus type 1 (kb-1 isolate)
C: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
D: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
E: human immunodeficiency virus type 1 (aka human immunodeficiency virus 1)
F: None of the above. | [E; E] |
<Instruct>: Given the context 'High-titer autologous neutralizing antibody responses have been demonstrated during early subtype C human immunodeficiency virus type 1 (HIV-1) infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human immunodeficiency virus type 1; hiv-1]
<Options>: A: human immunodeficiency virus type 1 hiv1 (aka human immunodeficiency virus 1)
B: human immunodeficiency virus type 1 (new york-5 isolate)
C: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
D: human immunodeficiency virus type 1 (kb-1 isolate)
E: aids virus (aka human immunodeficiency virus)
F: None of the above. | [A; A] |
<Instruct>: Given the context 'Poliovirus RNA is released from the capsid near a twofold symmetry axis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [poliovirus]
<Options>: A: p virus
B: unidentified poliovirus
C: human poliovirus type 2 (aka poliovirus 2)
D: polio virus 1 (aka poliovirus 1)
E: poliovirus (aka enterovirus c)
F: None of the above. | [E] |
<Instruct>: Given the context 'After recognizing and binding to its host cell, poliovirus (like other nonenveloped viruses) faces the challenge of translocating its genome across a cellular membrane and into the cytoplasm.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [poliovirus]
<Options>: A: murine poliovirus (aka theiler's encephalomyelitis virus)
B: poliovirus (aka enterovirus c)
C: unidentified poliovirus
D: human poliovirus type 2 (aka poliovirus 2)
E: p virus
F: None of the above. | [B] |
<Instruct>: Given the context 'To help to elucidate the mechanism of infection, we have used single-particle cryo-electron microscopy and tomography to reconstruct conformationally altered intermediates that are formed by the poliovirion at various stages of the poliovirus infection process.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [poliovirus]
<Options>: A: poliovirus type 1 (aka poliovirus 1)
B: poliovirus (aka enterovirus c)
C: unidentified poliovirus
D: p virus
E: poliovirus serotype 3 (aka poliovirus 3)
F: None of the above. | [B] |
<Instruct>: Given the context 'To help to elucidate the mechanism of infection, we have used single-particle cryo-electron microscopy and tomography to reconstruct conformationally altered intermediates that are formed by the poliovirion at various stages of the poliovirus infection process.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [poliovirus]
<Options>: A: unidentified poliovirus
B: poliovirus type 1 (aka poliovirus 1)
C: p virus
D: poliovirus serotype 3 (aka poliovirus 3)
E: None of the above. | [E] |
<Instruct>: Given the context 'Yeast-elicited cross-reactive antibodies to HIV Env glycans efficiently neutralize virions expressing exclusively high-mannose N-linked glycans.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast; hiv]
<Options>: A: human immunodeficiency virus type 1 hiv-1 (aka human immunodeficiency virus 1)
B: aids virus (aka human immunodeficiency virus 2)
C: saccharomyces ovalis (aka malassezia furfur)
D: saccharomyces rouxii (aka zygosaccharomyces rouxii)
E: saccharomycodes
F: aids virus (aka human immunodeficiency virus)
G: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
H: hiv (aka human immunodeficiency virus 3) (aka human immunodeficiency virus 3)
I: saccharomyces marxianus (aka kluyveromyces marxianus)
J: None of the above. | [G; F] |
<Instruct>: Given the context 'Yeast-elicited cross-reactive antibodies to HIV Env glycans efficiently neutralize virions expressing exclusively high-mannose N-linked glycans.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast; hiv]
<Options>: A: human immunodeficiency virus 3 (hiv (aka human immunodeficiency virus 3))
B: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
C: saccharomyces fermentati (aka torulaspora delbrueckii)
D: saccharomyces ovalis (aka malassezia furfur)
E: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
F: saccharomyces rouxii (aka zygosaccharomyces rouxii)
G: aids virus (aka human immunodeficiency virus 2)
H: saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (aka saccharomyces cerevisiae)
I: human immunodeficiency virus type-1 hiv-1 (aka human immunodeficiency virus 1)
J: None of the above. | [H; E] |
<Instruct>: Given the context 'We have described a triple mutant Saccharomyces cerevisiae strain that expresses high-mannose glycoproteins that bind to 2G12.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [saccharomyces cerevisiae]
<Options>: A: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
B: saccharomyces fermentati (aka torulaspora delbrueckii)
C: saccharomyces hansenii (aka debaryomyces hansenii)
D: saccharomyces marxianus (aka kluyveromyces marxianus)
E: saccharomyces rouxii (aka zygosaccharomyces rouxii)
F: None of the above. | [A] |
<Instruct>: Given the context 'When used to immunize rabbits, this yeast elicits antibodies that bind to gp120-associated glycans but fail to neutralize virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rabbits; yeast]
<Options>: A: saccharomyces albicans (aka candida albicans)
B: saccharomyces rouxii (aka zygosaccharomyces rouxii)
C: oryctolagus cuniculus (japanese white rabbit) (aka oryctolagus cuniculus)
D: saccharomyces ovalis (aka malassezia furfur)
E: saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (aka saccharomyces cerevisiae)
F: riverine rabbit (aka bunolagus monticularis)
G: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
H: rabbits and hares (aka leporidae)
I: swamp rabbit (aka sylvilagus aquaticus)
J: rabbit ear mite (aka psoroptes ovis)
K: None of the above. | [C; E] |
<Instruct>: Given the context 'When used to immunize rabbits, this yeast elicits antibodies that bind to gp120-associated glycans but fail to neutralize virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rabbits; yeast]
<Options>: A: swamp rabbit (aka sylvilagus aquaticus)
B: riverine rabbit (aka bunolagus monticularis)
C: saccharomyces albicans (aka candida albicans)
D: european rabbit (aka oryctolagus cuniculus)
E: saccharomyces marxianus (aka kluyveromyces marxianus)
F: lepus cuniculus cuniculus (aka oryctolagus cuniculus cuniculus)
G: torulaspora hansenii (aka debaryomyces hansenii)
H: saccharomyces italicus (aka saccharomyces cerevisiae)
I: rabbits and hares (aka leporidae)
J: saccharomyces rouxii (aka zygosaccharomyces rouxii)
K: None of the above. | [D; H] |
<Instruct>: Given the context 'Affinity purification of sera over columns conjugated with three 2G12-reactive yeast glycoproteins showed that these proteins could adsorb 80% of the antibodies that bind to gp120 glycans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: saccharomyces albicans (aka candida albicans)
B: saccharomycodes
C: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
D: saccharomyces fermentati (aka torulaspora delbrueckii)
E: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
F: None of the above. | [C] |
<Instruct>: Given the context 'Affinity purification of sera over columns conjugated with three 2G12-reactive yeast glycoproteins showed that these proteins could adsorb 80% of the antibodies that bind to gp120 glycans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: saccharomyces fermentati (aka torulaspora delbrueckii)
B: saccharomyces albicans (aka candida albicans)
C: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
D: saccharomycodes
E: None of the above. | [E] |
<Instruct>: Given the context 'Combined, these data show that the triple mutant yeast strain elicits antibodies that bind to high-mannose glycans presented on the HIV envelope, but only when they are displayed in a manner not found on native Env trimers.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: baker's yeast (aka saccharomyces cerevisiae)
B: saccharomyces globosus (aka saccharomyces uvarum)
C: saccharomyces rouxii (aka zygosaccharomyces rouxii)
D: saccharomycodes
E: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
F: None of the above. | [A] |
<Instruct>: Given the context 'Here, we report the sequencing of the small RNAs in rat cytomegalovirus (RCMV)-infected fibroblasts and persistently infected salivary glands.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat cytomegalovirus; rcmv]
<Options>: A: murid betaherpesvirus 2 (rat cytomegalovirus) (aka murid betaherpesvirus 2)
B: replication competent viruses
C: rattus rat parvovirus
D: catharanthus mosaic virus
E: carnation mottle virus (carmv) (aka carnation mottle virus)
F: murine cytomegalovirus (aka murid betaherpesvirus 1)
G: cnrmv (aka cherry necrotic rusty mottle virus)
H: rat minute virus
I: marr virus
J: mus rat parvovirus
K: None of the above. | [A; A] |
<Instruct>: Given the context 'Here, we report the sequencing of the small RNAs in rat cytomegalovirus (RCMV)-infected fibroblasts and persistently infected salivary glands.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat cytomegalovirus; rcmv]
<Options>: A: rat cytomegalovirus (aka murid betaherpesvirus 2)
B: red clover mottle virus (rcmv (aka red clover mottle virus))
C: marr virus
D: rat minute virus
E: gcmv (aka grapevine chrome mosaic virus) (aka grapevine chrome mosaic virus)
F: rat herpesvirus
G: rattus rattus muromegalovirus 1
H: rcnmv (aka red clover necrotic mosaic virus)
I: rattus rattus cytomegalovirus 1
J: cytomegalovirus
K: None of the above. | [A; A] |
<Instruct>: Given the context 'The RCMV miRNAs are distributed across the viral genome on both the positive and negative strands, with clusters of miRNAs at a number of locations, including near viral genes r1 and r111.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv]
<Options>: A: gcmv (aka grapevine chrome mosaic virus) (aka grapevine chrome mosaic virus)
B: catharanthus mosaic virus
C: rattus gemycircularvirus
D: carmel mito-like virus
E: red clover necrotic mosaic virus (rcnmv) (aka red clover necrotic mosaic virus)
F: None of the above. | [F] |
<Instruct>: Given the context 'The RCMV miRNAs have a genomic positional orientation similar to that of the miRNAs described for mouse cytomegalovirus, but they do not share any substantial sequence conservation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv; mouse cytomegalovirus]
<Options>: A: catharanthus mosaic virus
B: mouse herpesvirus 68 (aka murid gammaherpesvirus 4)
C: gcmv (aka grapevine chrome mosaic virus) (aka grapevine chrome mosaic virus)
D: ribgrass mosaic virus
E: cgrmv (aka cherry green ring mottle virus)
F: mice minute virus (aka minute virus of mice)
G: murine herpesvirus
H: mouse cytomegalovirus
I: murine cytomegalovirus (mcmv) (aka murid betaherpesvirus 1)
J: red clover mottle virus (rcmv (aka red clover mottle virus))
K: None of the above. | [K; I] |
<Instruct>: Given the context 'The RCMV miRNAs have a genomic positional orientation similar to that of the miRNAs described for mouse cytomegalovirus, but they do not share any substantial sequence conservation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv; mouse cytomegalovirus]
<Options>: A: cabmv (aka cowpea aphid-borne mosaic virus)
B: rat cytomegalovirus (aka murid betaherpesvirus 2)
C: murine cytomegalovirus mcmv (aka murid betaherpesvirus 1)
D: ribgrass mosaic virus
E: rat minute virus
F: mouse thymic virus (aka murid herpesvirus 3)
G: replication competent viruses
H: cytomegalovirus
I: murine cytomegalovirus (strain smith)
J: catharanthus mosaic virus
K: None of the above. | [K; C] |
<Instruct>: Given the context 'The RCMV miRNAs have a genomic positional orientation similar to that of the miRNAs described for mouse cytomegalovirus, but they do not share any substantial sequence conservation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv; mouse cytomegalovirus]
<Options>: A: replication competent viruses
B: cabmv (aka cowpea aphid-borne mosaic virus)
C: rat minute virus
D: murine cytomegalovirus (strain smith)
E: ribgrass mosaic virus
F: catharanthus mosaic virus
G: cytomegalovirus
H: rat cytomegalovirus (aka murid betaherpesvirus 2)
I: mouse thymic virus (aka murid herpesvirus 3)
J: None of the above. | [J; J] |
<Instruct>: Given the context 'Similar to other reported miRNAs, the RCMV miRNAs had considerable variation at their 3' and 5' ends.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv]
<Options>: A: gcmv (aka grapevine chrome mosaic virus) (aka grapevine chrome mosaic virus)
B: crmav (aka cherry rusty mottle associated virus)
C: marr virus
D: rat minute virus
E: carmel mito-like virus
F: None of the above. | [F] |
<Instruct>: Given the context 'We determined by real-time PCR that expression of the RCMV miRNA miR-r111.1-2 is highly expressed in the salivary glands and that miR-R87-1 is expressed in most tissues during the acute infection phase.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv]
<Options>: A: gcmv (aka grapevine chrome mosaic virus) (aka grapevine chrome mosaic virus)
B: cabmv (aka cowpea aphid-borne mosaic virus)
C: carmel mito-like virus
D: ribgrass mosaic virus
E: crmav (aka cherry rusty mottle associated virus)
F: None of the above. | [F] |
<Instruct>: Given the context 'Our study identified the miRNAs expressed by RCMV in vitro and in vivo and demonstrated that expression is tissue specific and associated with a stage of viral infection.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv]
<Options>: A: catharanthus mosaic virus
B: cabmv (aka cowpea aphid-borne mosaic virus)
C: marr virus
D: red clover necrotic mosaic virus (rcnmv) (aka red clover necrotic mosaic virus)
E: rat minute virus
F: None of the above. | [F] |
<Instruct>: Given the context 'Furthermore, infection of mice with rJPVDeltaSH induced more TNF-alpha expression, indicating that SH plays a role in blocking TNF-alpha expression in vivo.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus musculus (house mouse) (aka mus musculus)
B: southeastern asian house mouse (aka mus musculus castaneus)
C: eastern european house mouse (aka mus musculus musculus)
D: mice (aka mus <genus>) (aka mus <genus>)
E: mus molossinus (aka mus musculus molossinus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Translational control of the abundance of cytoplasmic poly(A) binding protein in human cytomegalovirus-infected cells.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human cytomegalovirus]
<Options>: A: human cytomegalovirus (strain 4654) (aka human herpesvirus 5 (strain 4654))
B: mouse cytomegalovirus
C: human cytomegalovirus (strain 1042) (aka human herpesvirus 5 (strain 1042))
D: human herpesvirus 5 (aka human betaherpesvirus 5)
E: murine cytomegalovirus (aka murid betaherpesvirus 1)
F: None of the above. | [D] |
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