instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
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<Instruct>: Given the context 'Methanobacterium petrolearium sp. nov. and Methanobacterium ferruginis sp. nov., mesophilic methanogens isolated from salty environments.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, s... | <Mentions>: [methanobacterium petrolearium sp. nov.; methanobacterium ferruginis sp. nov.]
<Options>: A: methanobacterium aridiramus
B: methanobacterium thermalcaliphilum (aka methanothermobacter thermautotrophicus)
C: methanobacterium veterum
D: methanoplanus petrolearius (aka methanolacinia petrolearia)
E: methanobac... | [E; G] |
<Instruct>: Given the context 'Comparative 16S rRNA gene sequence analysis revealed that strains Mic5c12(T) and Mic6c05(T) belonged to the genus Methanobacterium and their closest relative was Methanobacterium subterraneum A8p(T) (97.3 and 97.9 % 16S rRNA gene sequence similarity, respectively).', select the correct bi... | <Mentions>: [methanobacterium subterraneum]
<Options>: A: methanobacterium oryzae
B: methanobacterium beijingense
C: methanobacterium subterraneum
D: methanobacterium ferruginis
E: methanobacterium congolense
F: None of the above. | [C] |
<Instruct>: Given the context 'On the basis of phylogenetic analyses and phenotypic characteristics, two novel species are proposed, Methanobacterium petrolearium sp. nov. and Methanobacterium ferruginis sp. nov., with type strains Mic5c12(T)', select the correct biomedical concept for each mention using the provided o... | <Mentions>: [methanobacterium petrolearium sp. nov.; methanobacterium ferruginis sp. nov.]
<Options>: A: methanobacterium arcticum
B: methanobacterium palustre
C: methanobacterium formicicum
D: methanobacterium petrolearium
E: methanobacterium
F: microbacterium petrolearium
G: unidentified methanotrophic bacterium
H: m... | [D; J] |
<Instruct>: Given the context 'On the basis of phylogenetic analyses and phenotypic characteristics, two novel species are proposed, Methanobacterium petrolearium sp. nov. and Methanobacterium ferruginis sp. nov., with type strains Mic5c12(T)', select the correct biomedical concept for each mention using the provided o... | <Mentions>: [methanobacterium petrolearium sp. nov.; methanobacterium ferruginis sp. nov.]
<Options>: A: methanobacterium palustre
B: methanoplanus petrolearius (aka methanolacinia petrolearia)
C: methanobacterium arcticum
D: methanobacterium aridiramus
E: microbacterium petrolearium
F: methanobacterium petrolearium
G:... | [F; I] |
<Instruct>: Given the context 'Jiangella muralis sp. nov., from an indoor environment.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [jiangella muralis sp. nov.]
<Options>: A: nonomuraea jiangxiensis
B: jiangella sp. 1011mar4d47,2
C: halomonas muralis (aka modicisalibacter muralis)
D: jiangella muralis
E: jiangella sp.
F: None of the above. | [D] |
<Instruct>: Given the context 'A Gram-stain-positive, non-spore-forming actinobacterium, designated 15-Je-017(T), was isolated from wall material of an indoor environment.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, s... | <Mentions>: [15-je-017(t)]
<Options>: A: tridesmostemon
B: jellynose (aka ijimaia antillarum)
C: eryngium triquetrum
D: junctivena
E: jedda
F: None of the above. | [F] |
<Instruct>: Given the context 'On the basis of 16S rRNA gene sequence analysis, strain 15-Je-017(T) was shown to belong to the genus Jiangella and was most closely related to Jiangella alba YIM 61503(T) (99.7 % 16S rRNA gene sequence similarity), Jiangella alkaliphila D8-87(T) (99.0 %) and Jiangella gansuensis YIM 002(... | <Mentions>: [15-je-017(t); jiangella alba yim 61503(t); jiangella alkaliphila d8-87(t); jiangella gansuensis yim 002(t)]
<Options>: A: jiangella alba
B: colletotrichum jiangxiense
C: jellynose (aka ijimaia antillarum)
D: novosphingobium jiangmenense
E: junctivena
F: eteona
G: jessea
H: exiguobacterium alkaliphilum
I: s... | [U; A; T; K] |
<Instruct>: Given the context 'On the basis of 16S rRNA gene sequence analysis, strain 15-Je-017(T) was shown to belong to the genus Jiangella and was most closely related to Jiangella alba YIM 61503(T) (99.7 % 16S rRNA gene sequence similarity), Jiangella alkaliphila D8-87(T) (99.0 %) and Jiangella gansuensis YIM 002(... | <Mentions>: [15-je-017(t); jiangella alba yim 61503(t); jiangella alkaliphila d8-87(t); jiangella gansuensis yim 002(t)]
<Options>: A: kuohzygia albolinea
B: jiangella gansuensis
C: colletotrichum jiangxiense
D: jiangella gansuensis dsm 44835 (jiangella gansuensis strain dsm 44835) (aka jiangella gansuensis dsm 44835)
... | [U; I; N; B] |
<Instruct>: Given the context 'On the basis of 16S rRNA gene sequence analysis, strain 15-Je-017(T) was shown to belong to the genus Jiangella and was most closely related to Jiangella alba YIM 61503(T) (99.7 % 16S rRNA gene sequence similarity), Jiangella alkaliphila D8-87(T) (99.0 %) and Jiangella gansuensis YIM 002(... | <Mentions>: [15-je-017(t); jiangella alba yim 61503(t); jiangella alkaliphila d8-87(t); jiangella gansuensis yim 002(t)]
<Options>: A: novosphingobium jiangmenense
B: kribbella alba
C: anaerotalea alkaliphila
D: halomonas alkalicola
E: ganoderma sichuanense
F: eteone
G: eryngium triquetrum
H: jiangella alkaliphila
I: a... | [U; P; H; O] |
<Instruct>: Given the context 'On the basis of 16S rRNA gene sequence analysis, strain 15-Je-017(T) was shown to belong to the genus Jiangella and was most closely related to Jiangella alba YIM 61503(T) (99.7 % 16S rRNA gene sequence similarity), Jiangella alkaliphila D8-87(T) (99.0 %) and Jiangella gansuensis YIM 002(... | <Mentions>: [15-je-017(t); jiangella alba yim 61503(t); jiangella alkaliphila d8-87(t); jiangella gansuensis yim 002(t)]
<Options>: A: eurymetopum eburneocinctum
B: astrothelium jiangxiense
C: rhizocybe alba
D: anaerotalea alkaliphila
E: zhihengliuella alba
F: eryngium triquetrum
G: ganoderma sichuanense
H: jiangella a... | [T; T; H; P] |
<Instruct>: Given the context 'On the basis of 16S rRNA gene sequence analysis, strain 15-Je-017(T) was shown to belong to the genus Jiangella and was most closely related to Jiangella alba YIM 61503(T) (99.7 % 16S rRNA gene sequence similarity), Jiangella alkaliphila D8-87(T) (99.0 %) and Jiangella gansuensis YIM 002(... | <Mentions>: [15-je-017(t); jiangella alba yim 61503(t); jiangella alkaliphila d8-87(t); jiangella gansuensis yim 002(t)]
<Options>: A: jiangella gansuensis yim 002 (aka jiangella gansuensis dsm 44835)
B: nakamurella albus (aka nakamurella alba)
C: gordonia alkaliphila
D: walckenaeria alba
E: tepidimonas alkaliphilus
F:... | [U; F; G; R] |
<Instruct>: Given the context 'The fatty acid profile contained major amounts (>5 %) of anteiso-C(15 : 0), iso-C(16 : 0), iso-C(15 : 0), iso-C(17 : 0), anteiso-C(17 : 0) and C(17 : 1)omega8c, which supported the affiliation of strain 15-Je-017(T) to the genus Jiangella.', select the correct biomedical concept for each ... | <Mentions>: [15-je-017(t)]
<Options>: A: evadne tergestina (aka pseudevadne tergestina)
B: junctivena
C: eteone
D: tridesmostemon
E: tiwaripotamon hamyen
F: None of the above. | [F] |
<Instruct>: Given the context 'DNA-DNA relatedness and physiological and biochemical tests allowed the differentiation of strain 15-Je-017(T) from the type strains of the three known Jiangella species.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected op... | <Mentions>: [15-je-017(t)]
<Options>: A: eteona
B: eteone
C: junctivena
D: petipirene
E: vidumelon
F: None of the above. | [F] |
<Instruct>: Given the context 'Strain 15-Je-017(T) represents a novel Jiangella species, for which we propose the name Jiangella muralis sp. nov., with type strain 15-Je-017(T) (=', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each me... | <Mentions>: [15-je-017(t); jiangella muralis sp. nov.]
<Options>: A: tenuipetiolus teredon
B: bordetella muralis
C: eryngium triquetrum
D: jessamine (aka jasminum officinale)
E: bacterium mura
F: junctivena
G: nonomuraea jiangxiensis
H: vidumelon
I: jiangella muralis
J: malacobdella japonica
K: None of the above. | [I; I] |
<Instruct>: Given the context 'Strain 15-Je-017(T) represents a novel Jiangella species, for which we propose the name Jiangella muralis sp. nov., with type strain 15-Je-017(T) (=', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each me... | <Mentions>: [15-je-017(t); jiangella muralis sp. nov.]
<Options>: A: jiangella muralis
B: evadne tergestina (aka pseudevadne tergestina)
C: jedda
D: malacobdella japonica
E: jessea
F: murella muralis
G: jiangella gansuensis
H: tiwaripotamon hamyen
I: jellynose (aka ijimaia antillarum)
J: jiangella sp. 1011mar4d47,2
K: ... | [A; A] |
<Instruct>: Given the context 'Strain 15-Je-017(T) represents a novel Jiangella species, for which we propose the name Jiangella muralis sp. nov., with type strain 15-Je-017(T) (=', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each me... | <Mentions>: [15-je-017(t); jiangella muralis sp. nov.]
<Options>: A: jellynose (aka ijimaia antillarum)
B: evadne tergestina (aka pseudevadne tergestina)
C: jessea
D: jiangella sp. 1011mar4d47,2
E: jedda
F: jiangella gansuensis
G: murella muralis
H: tiwaripotamon hamyen
I: malacobdella japonica
J: None of the above. | [J; J] |
<Instruct>: Given the context 'Miniimonas arenae gen.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [miniimonas arenae]
<Options>: A: myrsine arenaria
B: filimonas lacunae
C: massilia arenae (telluria arenae) (aka massilia arenae)
D: miniimonas arenae
E: pedaliodes arena
F: None of the above. | [D] |
<Instruct>: Given the context 'A Gram-positive, non-motile, coccoid- to rod-shaped, non-spore-forming bacterium, designated strain YM18-15(T), was isolated from sea sand and studied using a polyphasic taxonomic approach.', select the correct biomedical concept for each mention using the provided options. Answer by list... | <Mentions>: [ym18-15]
<Options>: A: saccharomyces cerevisiae yjm332
B: saccharomyces cerevisiae yjm308
C: saccharomyces cerevisiae yjm1117
D: saccharomyces cerevisiae yjm1190
E: saccharomyces cerevisiae yjm248
F: None of the above. | [F] |
<Instruct>: Given the context 'Strain YM18-15(T) grew under both aerobic and anaerobic conditions.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ym18-15]
<Options>: A: saccharomyces cerevisiae yjm1549
B: saccharomyces cerevisiae yjm320
C: saccharomyces cerevisiae yjm1108
D: saccharomyces cerevisiae yjm1202
E: saccharomyces cerevisiae yjm270
F: None of the above. | [F] |
<Instruct>: Given the context 'Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YM18-15(T) formed a clade with Serinibacter salmoneus, Salana multivorans and Beutenbergia cavernae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selecte... | <Mentions>: [ym18-15; serinibacter salmoneus; salana multivorans; beutenbergia cavernae]
<Options>: A: anopheles homunculus complex 1 yml-2023a
B: tenuibacillus multivorans
C: serinibacter salmoneus
D: bunodosoma cavernatum (bunodosoma cavernata) (aka bunodosoma cavernatum)
E: saccharomyces cerevisiae yjm1106
F: saccha... | [U; C; T; Q] |
<Instruct>: Given the context 'Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YM18-15(T) formed a clade with Serinibacter salmoneus, Salana multivorans and Beutenbergia cavernae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selecte... | <Mentions>: [ym18-15; serinibacter salmoneus; salana multivorans; beutenbergia cavernae]
<Options>: A: spironucleus salmonicida
B: salana multivorans
C: anopheles homunculus complex 1 yml-2023a
D: beutenbergia cavernae
E: obrimus cavernosus (aka euobrimus cavernosus)
F: beauveria thailandica
G: anaerovirgula multivoran... | [U; S; B; D] |
<Instruct>: Given the context 'Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YM18-15(T) formed a clade with Serinibacter salmoneus, Salana multivorans and Beutenbergia cavernae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selecte... | <Mentions>: [ym18-15; serinibacter salmoneus; salana multivorans; beutenbergia cavernae]
<Options>: A: sycophila nsp13 ymz-2025a
B: saccharomyces cerevisiae yjm1117
C: melete salacia
D: saccharomyces cerevisiae yjm1549
E: salacia reticulata
F: borichinda cavernicola
G: saxeibacter lacteus (aka nakamurella lactea)
H: sp... | [U; J; I; M] |
<Instruct>: Given the context 'Phylogenetic analysis based on 16S rRNA gene sequences showed that strain YM18-15(T) formed a clade with Serinibacter salmoneus, Salana multivorans and Beutenbergia cavernae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selecte... | <Mentions>: [ym18-15; serinibacter salmoneus; salana multivorans; beutenbergia cavernae]
<Options>: A: serinibacter tropicus
B: serinibacter salmoneus
C: tenuibacillus multivorans
D: spironucleus salmonicida
E: staphylococcus gallinarum
F: saccharomyces cerevisiae yjm320
G: saccharomyces cerevisiae yjm270
H: sanguibact... | [U; B; J; T] |
<Instruct>: Given the context 'Strain YM18-15(T) differed from these three type strains in chemotaxonomic characteristics and in 16S rRNA gene signature nucleotides.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separat... | <Mentions>: [ym18-15]
<Options>: A: saccharomyces cerevisiae yjm1615
B: saccharomyces cerevisiae yjm1106
C: saccharomyces cerevisiae yjm1549
D: saccharomyces cerevisiae yjm308
E: marine yeast y5318
F: None of the above. | [F] |
<Instruct>: Given the context 'Based on genetic and chemotaxonomic evidence, it is suggested that strain YM18-15(T) represents a novel species of a new genus within the family Beutenbergiaceae, for which the name Miniimonas arenae gen. nov., sp. nov. is proposed.', select the correct biomedical concept for each mention... | <Mentions>: [ym18-15; miniimonas arenae]
<Options>: A: saccharomyces cerevisiae yjm320
B: saccharomyces cerevisiae yjm270
C: pseudomonas arenae
D: miniimonas arenae
E: saccharomyces cerevisiae yjm332
F: metabacillus arenae
G: ypthimini
H: saccharomyces cerevisiae yjm1105
I: filimonas lacunae
J: rubellimicrobium arenae
... | [D; D] |
<Instruct>: Given the context 'Based on genetic and chemotaxonomic evidence, it is suggested that strain YM18-15(T) represents a novel species of a new genus within the family Beutenbergiaceae, for which the name Miniimonas arenae gen. nov., sp. nov. is proposed.', select the correct biomedical concept for each mention... | <Mentions>: [ym18-15; miniimonas arenae]
<Options>: A: messor arenarius
B: marine yeast y5318
C: saccharomyces cerevisiae yjm1108
D: massilia arenae (telluria arenae) (aka massilia arenae)
E: saccharomyces cerevisiae yjm1118
F: myrsine arenaria
G: filimonas lacunae
H: sycophila nsp13 ymz-2025a
I: miniimonas arenae
J: s... | [I; I] |
<Instruct>: Given the context 'The type strain of the type species is YM18-15(T)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ym18-15]
<Options>: A: saccharomyces cerevisiae yjm1248
B: saccharomyces cerevisiae yjm1190
C: marine yeast y5318
D: saccharomyces cerevisiae yjm1549
E: saccharomyces cerevisiae yjm1108
F: None of the above. | [F] |
<Instruct>: Given the context 'Monovalent cations regulate expression and activity of the Hak1 potassium transporter in Debaryomyces hansenii.
Debaryomyces hansenii was able to grow in a medium containing residual amounts of K(+), indicating the activity of high affinity K(+) transporters.', select the correct biomed... | <Mentions>: [debaryomyces hansenii]
<Options>: A: debaryomyces robertsii (aka debaryomyces robertsiae)
B: torulaspora hansenii (aka debaryomyces hansenii)
C: debaryomyces hansenii x debaryomyces gruetzii
D: horelophopsis hanseni
E: hanseniaspora terricola
F: None of the above. | [B] |
<Instruct>: Given the context 'Transcriptional regulation analysis of the genes encoding the two potassium uptake systems in D. hansenii revealed that while DhTRK1 is not regulated at transcriptional level, expression of DhHAK1 required starvation in the absence of K(+) and Na(+) and was not affected by changes in memb... | <Mentions>: [d. hansenii]
<Options>: A: blautia hansenii (streptococcus hansenii) (aka blautia hansenii)
B: derxomyces polymorphus
C: hansenia
D: derxomyces anomalus (bullera anomala) (aka derxomyces anomalus)
E: torulaspora hansenii (aka debaryomyces hansenii)
F: None of the above. | [E] |
<Instruct>: Given the context 'Nocardioides caricicola sp. nov., an endophytic bacterium isolated from a halophyte, Carex scabrifolia Steud.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [nocardioides caricicola sp. nov.; carex scabrifolia]
<Options>: A: carex scabrifolia
B: nocardioides guangzhouensis
C: carex scabrida (uncinia scabriuscula) (aka carex scabrida)
D: carex caryophyllea
E: nocardia neocaledonica (aka nocardia neocaledoniensis)
F: nocardioides salarius (nocardioides basaltis) ... | [I; A] |
<Instruct>: Given the context 'Nocardioides caricicola sp. nov., an endophytic bacterium isolated from a halophyte, Carex scabrifolia Steud.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [nocardioides caricicola sp. nov.; carex scabrifolia]
<Options>: A: arthrinium caricicola
B: carex scoparia
C: nocardia neocaledonica (aka nocardia neocaledoniensis)
D: nocardioides panacis
E: carex scabrida (uncinia scabriuscula) (aka carex scabrida)
F: carex scabriuscula (carex gigas) (aka carex scabriusc... | [H; J] |
<Instruct>: Given the context 'A Gram-staining-positive, coccoid to rod-shaped bacterium, designated strain YC6903(T), was isolated from a halophytic plant (Carex scabrifolia Steud.)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each... | <Mentions>: [yc6903; carex scabrifolia]
<Options>: A: carex chuana
B: carex euryphylla
C: carex scabrifolia
D: marine yeast y5318
E: bacterium ycy33
F: saccharomyces cerevisiae yjm269
G: carex crebriflora
H: carex scoparia
I: vector ycy2508
J: yersinia pseudotuberculosis b-6866
K: None of the above. | [K; C] |
<Instruct>: Given the context 'A Gram-staining-positive, coccoid to rod-shaped bacterium, designated strain YC6903(T), was isolated from a halophytic plant (Carex scabrifolia Steud.)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each... | <Mentions>: [yc6903; carex scabrifolia]
<Options>: A: bacterium ycy70
B: marine yeast y5318
C: yersinia pestis cmcc67001
D: carex serreana
E: carex filifolia
F: carex lancifolia
G: bacterium ycy33
H: saccharomyces cerevisiae yjm693
I: carex scabrifolia
J: carex euryphylla
K: None of the above. | [K; I] |
<Instruct>: Given the context 'Strain YC6903(T) grew optimally at 30 ^0C and at pH 8.0.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yc6903]
<Options>: A: yersinia pestis cmcc67001
B: yersinia pseudotuberculosis b-6866
C: yersinia enterocolitica subsp. palearctica ye-150
D: yersinia pseudotuberculosis b-6796
E: vector ycy2508
F: None of the above. | [F] |
<Instruct>: Given the context 'Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain YC6903(T) belongs to the genus Nocardioides in the family Nocardioidaceae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each... | <Mentions>: [yc6903]
<Options>: A: bacterium yct69
B: yersinia enterocolitica subsp. palearctica ye-149
C: saccharomyces cerevisiae yjm269
D: candida albicans p75063
E: bacterium ycy69
F: None of the above. | [F] |
<Instruct>: Given the context 'Strain YC6903(T)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yc6903]
<Options>: A: cloning vector yip367
B: bacterium ycy70
C: bacterium yct69
D: cloning vector yep367
E: candida albicans p37039
F: None of the above. | [F] |
<Instruct>: Given the context 'was related most closely to Nocardioides pyridinolyticus OS4(T)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [nocardioides pyridinolyticus os4]
<Options>: A: nocardioides pyridinolyticus (nocardioides pyridinilyticus) (aka nocardioides pyridinolyticus)
B: nocardia pinensis (aka skermania piniformis)
C: nocardiopsis rhizosphaerae
D: nocardioides endophyticus
E: nocardia bovis (aka actinomyces bovis)
F: None of the ... | [A] |
<Instruct>: Given the context '(97.0 % 16S rRNA gene sequence similarity), Nocardioides dokdonensis FR1436(T)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [nocardioides dokdonensis fr1436]
<Options>: A: nocardioides pakistanensis
B: nocardiopsis kunsanensis dsm 44524
C: nocardia arizonensis
D: salinisphaera dokdonensis
E: nocardia jinanensis nbrc 108249
F: None of the above. | [F] |
<Instruct>: Given the context '(96.6 %), Nocardioides aquiterrae GW-9(T)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [nocardioides aquiterrae gw-9]
<Options>: A: nocardioides terrae
B: sphingobium aquiterrae
C: nocardia ninae
D: nocardia terrae
E: nocardioides aquiterrae
F: None of the above. | [E] |
<Instruct>: Given the context '(96.6 %) and Nocardioides hankookensis DS-30(T) (96.6 %).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [nocardioides hankookensis ds-30]
<Options>: A: nocardioides hankookensis
B: nocardioides pakistanensis
C: nocardioides taihuensis
D: nocardioides silvaticus
E: nocardia aobensis
F: None of the above. | [A] |
<Instruct>: Given the context 'The mean (+/-SD) level of DNA-DNA relatedness between strain YC6903(T) and N. pyridinolyticus OS4(T) was 53.5+/-5.5 %.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yc6903; n. pyridinolyticus os4]
<Options>: A: cloning vector yep367
B: nitrosophilus alvini
C: bacterium ycy69
D: nitrosopumilus ureiphilus
E: yersinia pestis cmcc49003
F: manganibacter manganicus (aka pseudaminobacter manganicus)
G: yersinia pseudotuberculosis b-6796
H: neobacillus rhizosphaerae
I: nocard... | [K; I] |
<Instruct>: Given the context 'The mean (+/-SD) level of DNA-DNA relatedness between strain YC6903(T) and N. pyridinolyticus OS4(T) was 53.5+/-5.5 %.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yc6903; n. pyridinolyticus os4]
<Options>: A: nitrosopumilus cobalaminigenes
B: saccharomyces cerevisiae yjm693
C: chroococcidiopsis thermalis ynp76b-ma3
D: bacterium ycy33
E: pontibacter rhizosphera
F: nitratireductor luteus
G: yersinia pestis cmcc49003
H: nocardioides pyridinilyticus (aka nocardioides py... | [K; H] |
<Instruct>: Given the context 'The predominant cellular fatty acid of strain YC6903(T) was iso-C(16 : 0) (28.9 %).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yc6903]
<Options>: A: candida albicans p57072
B: yersinia enterocolitica subsp. palearctica ye-149
C: saccharomyces cerevisiae yjm269
D: yersinia enterocolitica subsp. palearctica ye-150
E: bacterium ycy69
F: None of the above. | [F] |
<Instruct>: Given the context 'Phenotypic, phylogenetic and chemotaxonomic data indicated that strain YC6903(T) represents a novel species of the genus Nocardioides, for which the name Nocardioides caricicola sp. nov. is proposed.', select the correct biomedical concept for each mention using the provided options. Answ... | <Mentions>: [yc6903; nocardioides caricicola sp. nov.]
<Options>: A: bacterium ycy70
B: saccharomyces cerevisiae yjm269
C: nocardioides guangzhouensis
D: nocardia neocaledonica (aka nocardia neocaledoniensis)
E: cloning vector yip367
F: nocardioides caricicola
G: nocardioides panacis
H: yersinia pestis cmcc49003
I: sac... | [F; F] |
<Instruct>: Given the context 'Phenotypic, phylogenetic and chemotaxonomic data indicated that strain YC6903(T) represents a novel species of the genus Nocardioides, for which the name Nocardioides caricicola sp. nov. is proposed.', select the correct biomedical concept for each mention using the provided options. Answ... | <Mentions>: [yc6903; nocardioides caricicola sp. nov.]
<Options>: A: nocardia bovistercoris
B: bacterium ycy70
C: nocardioides caricicola
D: bacterium ycy33
E: arthrinium caricicola
F: nocardioides panacis
G: yersinia enterocolitica subsp. palearctica ye-149
H: yersinia pseudotuberculosis b-6796
I: nocardioides nematod... | [C; C] |
<Instruct>: Given the context 'The type strain is YC6903(T)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yc6903]
<Options>: A: chroococcidiopsis thermalis ynp76b-ma3
B: yersinia pestis cmcc49003
C: yersinia enterocolitica subsp. palearctica ye-150
D: yersinia pseudotuberculosis b-6796
E: bacterium yct69
F: None of the above. | [F] |
<Instruct>: Given the context '16S rRNA gene sequence analysis showed that strain P(T) fell within a group of species in the genus Spirochaeta, including Spirochaeta litoralis, S. isovalerica and S. cellobiosiphila, with which it shared less then 89 % sequence similarity.', select the correct biomedical concept for eac... | <Mentions>: [spirochaeta litoralis; s. isovalerica; s. cellobiosiphila]
<Options>: A: spiroplasma litorale
B: spirochaeta isovalerica
C: spirochaeta cellobiosiphila
D: soliva valdiviana
E: spirosoma litoris
F: cytophaga saccharophila (aka flavobacterium saccharophilum)
G: tellina litoralis (aka salmacoma litoralis)
H: ... | [L; B; C] |
<Instruct>: Given the context '16S rRNA gene sequence analysis showed that strain P(T) fell within a group of species in the genus Spirochaeta, including Spirochaeta litoralis, S. isovalerica and S. cellobiosiphila, with which it shared less then 89 % sequence similarity.', select the correct biomedical concept for eac... | <Mentions>: [spirochaeta litoralis; s. isovalerica; s. cellobiosiphila]
<Options>: A: schleiferia thermophila
B: tropidotilla litoralis
C: gomphosphaeria litoralis (aka snowella litoralis)
D: vitis saccharifera
E: spirochaeta litoralis (aka oceanispirochaeta litoralis)
F: saprolegnia litoralis
G: salsola austro-iranica... | [E; I; J] |
<Instruct>: Given the context '16S rRNA gene sequence analysis showed that strain P(T) fell within a group of species in the genus Spirochaeta, including Spirochaeta litoralis, S. isovalerica and S. cellobiosiphila, with which it shared less then 89 % sequence similarity.', select the correct biomedical concept for eac... | <Mentions>: [spirochaeta litoralis; s. isovalerica; s. cellobiosiphila]
<Options>: A: pediococcus cellicola
B: shewanella litoralis
C: oceanispirochaeta litoralis (spirochaeta litoralis) (aka oceanispirochaeta litoralis)
D: soliva valdiviana
E: spirochaeta cellobiosiphila
F: sphingonotus uvarovi
G: scopulibacillus cell... | [C; J; E] |
<Instruct>: Given the context 'Strain SOL3f37(T) had a typical Gram-positive-type cell-wall structure, unlike the thick, multilayered cell wall of its closest relative Clostridiisalibacter paucivorans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected op... | <Mentions>: [clostridiisalibacter paucivorans]
<Options>: A: clostridiisalibacter paucivorans dsm 22131
B: clostridia bacterium
C: clostridiisalibacter paucivorans
D: rhizorhabdus dicambivorans
E: aquidulcibacter paucihalophilus
F: None of the above. | [C] |
<Instruct>: Given the context 'Also, strain SOL3f37(T) grew heterotrophically on yeast extract, peptone and bio-Trypticase, but was unable to grow on Casamino acids.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separat... | <Mentions>: [yeast]
<Options>: A: saccharomyces marxianus (aka kluyveromyces marxianus)
B: saccharomyces fermentati (aka torulaspora delbrueckii)
C: saccharomyces rouxii (aka zygosaccharomyces rouxii)
D: saccharomyces globosus (aka saccharomyces uvarum)
E: baker's yeast (aka saccharomyces cerevisiae)
F: None of the abo... | [E] |
<Instruct>: Given the context 'It exhibited highest 16S rRNA gene sequence similarity (93.4 %) with Clostridiisalibacter paucivorans 37HS60(T), 91.8 % with Thermohalobacter berrensis CTT3(T) and 91.7 % with Caloranaerobacter azorensis MV1087(T).', select the correct biomedical concept for each mention using the provide... | <Mentions>: [clostridiisalibacter paucivorans; thermohalobacter berrensis; caloranaerobacter azorensis]
<Options>: A: thermomonas beijingensis
B: salicibibacter cibarius
C: clostridiisalibacter paucivorans
D: thermoanaerobacter italicus
E: rugosibacter aromaticivorans
F: terrabacter aerolatus
G: clostridiisalibacter pa... | [C; H; J] |
<Instruct>: Given the context 'It exhibited highest 16S rRNA gene sequence similarity (93.4 %) with Clostridiisalibacter paucivorans 37HS60(T), 91.8 % with Thermohalobacter berrensis CTT3(T) and 91.7 % with Caloranaerobacter azorensis MV1087(T).', select the correct biomedical concept for each mention using the provide... | <Mentions>: [clostridiisalibacter paucivorans; thermohalobacter berrensis; caloranaerobacter azorensis]
<Options>: A: clostridia bacterium
B: bacillus methanolicus
C: thermoanaerobacter indiensis
D: clostridium folliculivorans
E: parasporobacterium paucivorans
F: clostridiisalibacter paucivorans dsm 22131
G: pannonibac... | [O; J; H] |
<Instruct>: Given the context 'It exhibited highest 16S rRNA gene sequence similarity (93.4 %) with Clostridiisalibacter paucivorans 37HS60(T), 91.8 % with Thermohalobacter berrensis CTT3(T) and 91.7 % with Caloranaerobacter azorensis MV1087(T).', select the correct biomedical concept for each mention using the provide... | <Mentions>: [clostridiisalibacter paucivorans; thermohalobacter berrensis; caloranaerobacter azorensis]
<Options>: A: pannonibacter carbonis
B: clostridiisalibacter paucivorans
C: thermoanaerobacter ethanolicus
D: thermoanaerobacter italicus
E: terrabacter aerolatus
F: thermoanaerobacter sulfurophilus
G: spectribacter ... | [B; L; N] |
<Instruct>: Given the context 'Streptomyces lacticiproducens sp. nov., a lactic acid-producing streptomycete isolated from the rhizosphere of tomato plants.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by ... | <Mentions>: [tomato]
<Options>: A: solanum ipomoeoides
B: solanum canense
C: solanum mammosum
D: solanum latifolium
E: tomato (aka solanum lycopersicum)
F: None of the above. | [E] |
<Instruct>: Given the context 'A novel actinomycete, designated strain GIMN4.001(T), was isolated from the rhizosphere of tomato plants grown in Guangzhou, China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated ... | <Mentions>: [tomato]
<Options>: A: solanum dioicum
B: tomato (aka solanum lycopersicum)
C: peruvian tomato (aka solanum peruvianum)
D: solanum trifidum
E: solanum cornifolium
F: None of the above. | [B] |
<Instruct>: Given the context 'The strain produced greyish white aerial mycelia, lactic acid and a large quantity of double diamond-shaped crystals on potato dextrose agar and yeast extract-malt extract agar.', select the correct biomedical concept for each mention using the provided options. Answer by listing the sele... | <Mentions>: [potato; yeast]
<Options>: A: saccharomyces drosophilarum (aka kluyveromyces lactis)
B: potatoes (aka solanum tuberosum)
C: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
D: sweet potato (aka ipomoea batatas)
E: saccharomyces globosus (a... | [B; C] |
<Instruct>: Given the context 'The strain produced greyish white aerial mycelia, lactic acid and a large quantity of double diamond-shaped crystals on potato dextrose agar and yeast extract-malt extract agar.', select the correct biomedical concept for each mention using the provided options. Answer by listing the sele... | <Mentions>: [potato; yeast]
<Options>: A: saccharomyces italicus (aka saccharomyces cerevisiae)
B: potato-bean (aka pachyrhizus erosus)
C: saccharomyces ovalis (aka malassezia furfur)
D: saccharomyces fermentati (aka torulaspora delbrueckii)
E: sweet potato (aka ipomoea batatas)
F: saccharomyces albicans (aka candida a... | [I; A] |
<Instruct>: Given the context 'No antibacterial activity was observed against Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis or Candida albicans, but inhibitory activity was observed against Penicillium citrinum.', select the correct biomedical concept for each mention using the provided options. Answer by... | <Mentions>: [escherichia coli; pseudomonas aeruginosa; bacillus subtilis; candida albicans]
<Options>: A: cataglyphis albicans (formica albicans) (aka cataglyphis albicans)
B: vibrio subtilis (aka bacillus subtilis)
C: vibrio coli (aka campylobacter coli)
D: bacillus mobilis
E: xylesthia albicans
F: bacillus aerophilus... | [S; R; B; P] |
<Instruct>: Given the context 'No antibacterial activity was observed against Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis or Candida albicans, but inhibitory activity was observed against Penicillium citrinum.', select the correct biomedical concept for each mention using the provided options. Answer by... | <Mentions>: [escherichia coli; pseudomonas aeruginosa; bacillus subtilis; candida albicans]
<Options>: A: bacillus uniflagellatus (aka bacillus subtilis)
B: bacillus mesentericus (aka bacillus pumilus)
C: candona albicans (aka pseudocandona albicans)
D: pseudomonas ovalis (aka pseudomonas putida)
E: pseudomonas oryzae
... | [K; O; A; G] |
<Instruct>: Given the context 'No antibacterial activity was observed against Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis or Candida albicans, but inhibitory activity was observed against Penicillium citrinum.', select the correct biomedical concept for each mention using the provided options. Answer by... | <Mentions>: [escherichia coli; pseudomonas aeruginosa; bacillus subtilis; candida albicans]
<Options>: A: escherichia/shigella coli (aka escherichia coli)
B: pseudomonas paralactis
C: pseudomonas haemolytica
D: escherichia coli 99.1762
E: bacillus mesentericus (aka bacillus subtilis)
F: bacillus aerophilus
G: bacterium... | [A; G; E; N] |
<Instruct>: Given the context 'No antibacterial activity was observed against Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis or Candida albicans, but inhibitory activity was observed against Penicillium citrinum.', select the correct biomedical concept for each mention using the provided options. Answer by... | <Mentions>: [escherichia coli; pseudomonas aeruginosa; bacillus subtilis; candida albicans]
<Options>: A: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
B: pseudomonas paralactis
C: escherichia freundii (aka citrobacter freundii)
D: entamoeba coli
E: farigia a... | [J; S; F; T] |
<Instruct>: Given the context 'No antibacterial activity was observed against Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis or Candida albicans, but inhibitory activity was observed against Penicillium citrinum.', select the correct biomedical concept for each mention using the provided options. Answer by... | <Mentions>: [escherichia coli; pseudomonas aeruginosa; bacillus subtilis; candida albicans]
<Options>: A: escherichia coli 97.1742
B: enterobacter aerogenes (aka klebsiella aerogenes)
C: cataglyphis albicans (formica albicans) (aka cataglyphis albicans)
D: bacillus (aka bacillus <walking sticks>)
E: escherichia coli (e... | [E; K; G; O] |
<Instruct>: Given the context 'No antibacterial activity was observed against Escherichia coli, Pseudomonas aeruginosa, Bacillus subtilis or Candida albicans, but inhibitory activity was observed against Penicillium citrinum.', select the correct biomedical concept for each mention using the provided options. Answer by... | <Mentions>: [penicillium citrinum]
<Options>: A: penicillium odoratum
B: penicillium contaminatum
C: penicillium terrenum (eupenicillium terrenum) (aka penicillium terrenum)
D: penicillium citrinum
E: penicillium cyaneum (citromyces cyaneus) (aka penicillium cyaneum)
F: None of the above. | [D] |
<Instruct>: Given the context '16S rRNA gene sequence analysis revealed that strain GIMN4.001(T) was related most closely to Streptomyces morookaense ATCC 19166(T) (98.9 % similarity) and Streptomyces lavenduligriseus ATCC 13306(T) (98.7 %).', select the correct biomedical concept for each mention using the provided op... | <Mentions>: [streptomyces morookaense; atcc 19166(t); streptomyces lavenduligriseus; atcc 13306(t)]
<Options>: A: streptomyces griseoluteus (streptomyces griseiluteus) (aka streptomyces griseoluteus)
B: bacterium 05.95.36
C: raoultella terrigena atcc 33257
D: streptomyces albogriseus ('streptomyces albogriseus') (aka s... | [H; H; N; N] |
<Instruct>: Given the context '16S rRNA gene sequence analysis revealed that strain GIMN4.001(T) was related most closely to Streptomyces morookaense ATCC 19166(T) (98.9 % similarity) and Streptomyces lavenduligriseus ATCC 13306(T) (98.7 %).', select the correct biomedical concept for each mention using the provided op... | <Mentions>: [streptomyces morookaense; atcc 19166(t); streptomyces lavenduligriseus; atcc 13306(t)]
<Options>: A: enterobacteriaceae bacterium s16679
B: bacterium 061250
C: streptomyces lavendulocolor (streptomyces lavendulicolor) (aka streptomyces lavendulocolor)
D: streptomyces olivogriseus
E: raoultella terrigena at... | [P; P; Q; Q] |
<Instruct>: Given the context '16S rRNA gene sequence analysis revealed that strain GIMN4.001(T) was related most closely to Streptomyces morookaense ATCC 19166(T) (98.9 % similarity) and Streptomyces lavenduligriseus ATCC 13306(T) (98.7 %).', select the correct biomedical concept for each mention using the provided op... | <Mentions>: [streptomyces morookaense; atcc 19166(t); streptomyces lavenduligriseus; atcc 13306(t)]
<Options>: A: bacterium a300
B: bacterium imcc7588
C: streptomyces staurosporininus
D: streptoverticillium moro-okaense (aka streptomyces morookaense)
E: enterobacteriaceae bacterium m536
F: streptomyces naphthomycinicus... | [D; D; Q; Q] |
<Instruct>: Given the context '16S rRNA gene sequence analysis revealed that strain GIMN4.001(T) was related most closely to Streptomyces morookaense ATCC 19166(T) (98.9 % similarity) and Streptomyces lavenduligriseus ATCC 13306(T) (98.7 %).', select the correct biomedical concept for each mention using the provided op... | <Mentions>: [streptomyces morookaense; atcc 19166(t); streptomyces lavenduligriseus; atcc 13306(t)]
<Options>: A: bacillus aerolatus
B: bacterium lb-133
C: streptomyces clavuligerus
D: streptoverticillium lavenduligriseum (aka streptomyces lavenduligriseus)
E: streptomyces naphthomycinicus
F: bacterium imcc8866
G: stre... | [H; H; D; D] |
<Instruct>: Given the context 'Furthermore, strain GIMN4.001(T) could be differentiated from S. morookaense, S. lavenduligriseus and other closely related species of the genus Streptomyces based on morphological, physiological and biochemical characteristics.', select the correct biomedical concept for each mention usi... | <Mentions>: [s. morookaense]
<Options>: A: sulfolobus shibatae (aka saccharolobus shibatae)
B: saussurea komaroviana
C: streptomyces moro-okaensis (aka streptomyces morookaense)
D: selaginella kusaiensis
E: seimatosporium marivanicum
F: None of the above. | [C] |
<Instruct>: Given the context 'The incidence of non-albicans species of Candida is increasing compared with that of Candida albicans, and several species, such as Candida glabrata and Candida krusei, may be resistant to azole antifungal therapy.', select the correct biomedical concept for each mention using the provide... | <Mentions>: [candida albicans; candida glabrata; candida krusei]
<Options>: A: saccharomyces krusei (aka pichia kudriavzevii)
B: deutzia glabrata
C: candida tunisiensis (aka [candida] tunisiensis)
D: athletes albicans
E: monilia albicans (aka candida albicans)
F: candida glabrata (aka nakaseomyces glabratus)
G: gaesisc... | [E; F; A] |
<Instruct>: Given the context 'The incidence of non-albicans species of Candida is increasing compared with that of Candida albicans, and several species, such as Candida glabrata and Candida krusei, may be resistant to azole antifungal therapy.', select the correct biomedical concept for each mention using the provide... | <Mentions>: [candida albicans; candida glabrata; candida krusei]
<Options>: A: torulopsis glabrata (aka nakaseomyces glabratus)
B: candida famata (aka debaryomyces hansenii)
C: candida tunisiensis (aka [candida] tunisiensis)
D: ozoroa albicans
E: fibroporia albicans
F: saccharomyces krusei (aka pichia kudriavzevii)
G: ... | [O; A; F] |
<Instruct>: Given the context 'The incidence of non-albicans species of Candida is increasing compared with that of Candida albicans, and several species, such as Candida glabrata and Candida krusei, may be resistant to azole antifungal therapy.', select the correct biomedical concept for each mention using the provide... | <Mentions>: [candida albicans; candida glabrata; candida krusei]
<Options>: A: candida tunisiensis (aka [candida] tunisiensis)
B: terminalia glabrata
C: gaudichaudia krusei
D: candona albicans (aka pseudocandona albicans)
E: craspedia glabrata
F: mycotorula albicans (aka candida albicans)
G: bursera krusei
H: farigia a... | [F; I; M] |
<Instruct>: Given the context 'An increasing number of sporadic cases of invasive fungal infections by non-neoformans cryptococci have been reported in immunocompromised hosts, especially for patients with advanced HIV infection or cancer who are undergoing transplant.', select the correct biomedical concept for each m... | <Mentions>: [hiv]
<Options>: A: human immunodeficiency virus type-1 hiv-1 (aka human immunodeficiency virus 1)
B: aids virus (aka human immunodeficiency virus 2)
C: aids virus (aka human immunodeficiency virus)
D: hiv (aka human immunodeficiency virus 3) (aka human immunodeficiency virus 3)
E: None of the above. | [A] |
<Instruct>: Given the context 'Although rare yeasts are emerging as opportunistic human pathogens, diagnosis remains challenging and treatment suboptimal.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by sem... | <Mentions>: [human]
<Options>: A: pediculus humanus corporis (pediculus humanus humanus) (aka pediculus humanus corporis)
B: carcharhinus humani
C: human louse (aka pediculus humanus)
D: homo sapiens (human) (aka homo sapiens)
E: macrobiotus sapiens
F: None of the above. | [D] |
<Instruct>: Given the context 'Soil nutrient status determines how elephant utilize trees and shape environments.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [elephant]
<Options>: A: syrian elephant (aka elephas maximus asurus)
B: elephas
C: elephantopus
D: elephantidae (elephants) (aka elephantidae)
E: african savannah elephant (aka loxodonta africana)
F: None of the above. | [E] |
<Instruct>: Given the context 'To reduce these complications, we studied patch selection by an animal with negligible predation risk, the African elephant.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semi... | <Mentions>: [african elephant]
<Options>: A: syrian elephant (aka elephas maximus asurus)
B: elephants (aka elephantidae)
C: african bush elephant (aka loxodonta africana)
D: elephas
E: asiatic elephant (aka elephas maximus)
F: None of the above. | [C] |
<Instruct>: Given the context 'We hypothesized that elephant would select nutrient-rich patches, based on the nutrient load per 2500 m(2) down to the individual plant scale, and that this selection will depend on the nitrogen and phosphorous contents of plants.', select the correct biomedical concept for each mention u... | <Mentions>: [elephant]
<Options>: A: african bush elephant (aka loxodonta africana)
B: elephant (aka loxodonta cyclotis)
C: elephas
D: syrian elephant (aka elephas maximus asurus)
E: elephantidae (elephants) (aka elephantidae)
F: None of the above. | [A] |
<Instruct>: Given the context 'We predicted that elephant would cause more adverse impact to trees of lower value to them in order to reach plant parts with higher nutrient concentrations such as bark and root.', select the correct biomedical concept for each mention using the provided options. Answer by listing the se... | <Mentions>: [elephant]
<Options>: A: elephastomus
B: syrian elephant (aka elephas maximus asurus)
C: indian elephant (aka elephas maximus)
D: african savannah elephant (aka loxodonta africana)
E: african elephants (aka loxodonta)
F: None of the above. | [D] |
<Instruct>: Given the context 'However, elephant should maintain nutrient-rich trees by inducing coppicing of trees through re-utilization of leaves.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [elephant]
<Options>: A: elephastomus
B: african savanna elephant (aka loxodonta africana)
C: african elephants (aka loxodonta)
D: elephant (aka loxodonta cyclotis)
E: elephants (aka elephantidae)
F: None of the above. | [B] |
<Instruct>: Given the context 'Elephant patch selection was measured in a homogenous tree species stand by manipulating the spatial distribution of soil nutrients in a large field experiment using NPK fertilizer.', select the correct biomedical concept for each mention using the provided options. Answer by listing the ... | <Mentions>: [elephant]
<Options>: A: elephant (aka loxodonta cyclotis)
B: elephantulus (long-eared elephant shrews) (aka elephantulus)
C: elephastomus
D: elephas africanus (aka loxodonta africana)
E: african elephant (aka loxodonta)
F: None of the above. | [D] |
<Instruct>: Given the context 'Elephant were able to select nutrient-rich patches and utilized Colophospermum mopane trees inside these patches more than outside, at scales ranging from 2500 down to 100 m(2) .', select the correct biomedical concept for each mention using the provided options. Answer by listing the sel... | <Mentions>: [elephant; colophospermum mopane]
<Options>: A: copaifera mopane (aka colophospermum mopane)
B: copaxa mazaorum
C: african savannah elephant (aka loxodonta africana)
D: elephant (aka loxodonta cyclotis)
E: ipomoea coscinosperma
F: cohnella mopanensis
G: cymaenes melaporphyrus
H: elephants (aka elephantidae)... | [C; A] |
<Instruct>: Given the context 'Elephant were able to select nutrient-rich patches and utilized Colophospermum mopane trees inside these patches more than outside, at scales ranging from 2500 down to 100 m(2) .', select the correct biomedical concept for each mention using the provided options. Answer by listing the sel... | <Mentions>: [elephant; colophospermum mopane]
<Options>: A: elephantopus
B: syrian elephant (aka elephas maximus asurus)
C: elephantulus (long-eared elephant shrews) (aka elephantulus)
D: citronella grass (aka cymbopogon nardus)
E: copaifera mopane (aka colophospermum mopane)
F: ipomoea coscinosperma
G: poecilochirus s... | [I; E] |
<Instruct>: Given the context 'Although both nitrogen and phosphorus contents of leaves from C. mopane trees were higher in fertilized and selected patches, patch choice correlated most strongly with nitrogen content.', select the correct biomedical concept for each mention using the provided options. Answer by listing... | <Mentions>: [c. mopane]
<Options>: A: cyprinodon maya
B: coprinellus maluruscyaneus
C: mopane (aka colophospermum mopane)
D: cymothoe magnus
E: campanilla (aka ipomoea tricolor)
F: None of the above. | [C] |
<Instruct>: Given the context 'Our results emphasize the necessity of including scale-dependent selectivity in foraging studies and how elephant foraging behaviour can be used as indicators of change in the availability of nutrients.
', select the correct biomedical concept for each mention using the provided options.... | <Mentions>: [elephant]
<Options>: A: african elephant (aka loxodonta)
B: elephantulus (long-eared elephant shrews) (aka elephantulus)
C: elephas
D: elephant (aka loxodonta cyclotis)
E: african savannah elephant (aka loxodonta africana)
F: None of the above. | [E] |
<Instruct>: Given the context 'Does variation in movement tactics and trophic interactions among American alligators create habitat linkages?
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [american alligators]
<Options>: A: alligator sinensis (chinese alligator) (aka alligator sinensis)
B: alligator
C: ptilinopus alligator
D: alligator mississippiensis (crocodilus mississipiensis) (aka alligator mississippiensis)
E: arrenurus americanus
F: None of the above. | [D] |
<Instruct>: Given the context '2. We used passive acoustic telemetry and stable isotope analysis to investigate whether specialization in movement and feeding patterns of American alligators (Alligator mississippiensis) in an oligotrophic subtropical estuary created habitat linkages between marine and estuarine/freshwa... | <Mentions>: [american alligators; alligator mississippiensis]
<Options>: A: american angler (aka lophius americanus)
B: allantus mellipes
C: ptilinopus alligator
D: alligator latirostris (aka caiman latirostris)
E: alligator sinensis (chinese alligator) (aka alligator sinensis)
F: alligator gar (aka atractosteus spatul... | [G; G] |
<Instruct>: Given the context '2. We used passive acoustic telemetry and stable isotope analysis to investigate whether specialization in movement and feeding patterns of American alligators (Alligator mississippiensis) in an oligotrophic subtropical estuary created habitat linkages between marine and estuarine/freshwa... | <Mentions>: [american alligators; alligator mississippiensis]
<Options>: A: alluroides americanus (aka brinkhurstia americana)
B: melanoplus mississippi
C: american alligator (aka alligator mississippiensis)
D: mollisquama mississippiensis
E: alligator gar (aka atractosteus spatula)
F: faxonius mississippiensis (orcone... | [C; C] |
<Instruct>: Given the context '2. We used passive acoustic telemetry and stable isotope analysis to investigate whether specialization in movement and feeding patterns of American alligators (Alligator mississippiensis) in an oligotrophic subtropical estuary created habitat linkages between marine and estuarine/freshwa... | <Mentions>: [american alligators; alligator mississippiensis]
<Options>: A: arrenurus americanus
B: acianthera alligatorifera (pleurothallis alligatorifera) (aka acianthera alligatorifera)
C: alligator gar (aka atractosteus spatula)
D: faxonius mississippiensis (orconectes mississippiensis) (aka faxonius mississippiens... | [I; I] |
<Instruct>: Given the context 'Here, we describe fitness consequences of three phenotypically plastic ARTs in the African striped mouse (Rhabdomys pumilio) and show that relative fitness of ARTs differs between years.', select the correct biomedical concept for each mention using the provided options. Answer by listing... | <Mentions>: [african striped mouse; rhabdomys pumilio]
<Options>: A: striped field mouse (aka apodemus agrarius)
B: myosciurus pumilio (african pygmy squirrel) (aka myosciurus pumilio)
C: typical striped grass mouse (aka lemniscomys striatus)
D: nematus pumilio (aka euura pumilio)
E: mus agrestis (aka microtus agrestis... | [I; I] |
<Instruct>: Given the context 'Here, we describe fitness consequences of three phenotypically plastic ARTs in the African striped mouse (Rhabdomys pumilio) and show that relative fitness of ARTs differs between years.', select the correct biomedical concept for each mention using the provided options. Answer by listing... | <Mentions>: [african striped mouse; rhabdomys pumilio]
<Options>: A: typical striped grass mouse (aka lemniscomys striatus)
B: rhabdomys intermedius
C: corchorus pumilio
D: garyops pumilus (aka idiogaryops pumilis)
E: flat-haired mouse (aka mus platythrix)
F: mus agrestis (aka microtus agrestis)
G: four-striped grass m... | [G; G] |
<Instruct>: Given the context 'The SMC-like protein complex SbcCD enhances DNA polymerase IV-dependent spontaneous mutation in Escherichia coli.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: escherichia freundii (aka citrobacter freundii)
B: escherichia coli 99.1762
C: escherichia coli c
D: escherichia coli 97.1742
E: e. coli (aka escherichia coli)
F: None of the above. | [E] |
<Instruct>: Given the context 'In Escherichia coli, RpoS, the general stress response sigma factor, regulates the activity of the specialized DNA polymerase DNA polymerase IV (Pol IV) both in stationary-phase and in exponential-phase cells.', select the correct biomedical concept for each mention using the provided opt... | <Mentions>: [escherichia coli]
<Options>: A: escherichia/shigella coli (aka escherichia coli)
B: escherichia coli 9.1796
C: escherichia
D: escherichia coli c
E: vibrio coli (aka campylobacter coli)
F: None of the above. | [A] |
<Instruct>: Given the context 'Staphylococcus aureus ClpC divergently regulates capsule via sae and codY in strain newman but activates capsule via codY in strain UAMS-1 and in strain Newman with repaired saeS.
ClpC is an ATPase chaperone found in most Gram-positive low-GC bacteria.', select the correct biomedical co... | <Mentions>: [staphylococcus aureus; newman; uams-1]
<Options>: A: uga
B: newmania
C: newmanella
D: ufeus
E: agaribacillus aureus
F: rhizophila
G: newman partiti-like virus
H: staphylococcus haemolyticus
I: 'staphylococcus faecalis' (aka staphylococcus faecalis)
J: newman's speckled skink (aka oligosoma newmani)
K: univ... | [L; L; L] |
<Instruct>: Given the context 'Staphylococcus aureus ClpC divergently regulates capsule via sae and codY in strain newman but activates capsule via codY in strain UAMS-1 and in strain Newman with repaired saeS.
ClpC is an ATPase chaperone found in most Gram-positive low-GC bacteria.', select the correct biomedical co... | <Mentions>: [staphylococcus aureus; newman; uams-1]
<Options>: A: staphylococcus equorum
B: uncultured sulfate-reducing bacterium umtradsr626-1
C: newmania serpens
D: umma
E: fergusonina newmani
F: staphylococcus haemolyticus
G: rhizophila
H: ufeus
I: agaribacillus aureus
J: staphylococcus hominis
K: arthrobacter galli... | [O; O; O] |
<Instruct>: Given the context 'Staphylococcus aureus ClpC divergently regulates capsule via sae and codY in strain newman but activates capsule via codY in strain UAMS-1 and in strain Newman with repaired saeS.
ClpC is an ATPase chaperone found in most Gram-positive low-GC bacteria.', select the correct biomedical co... | <Mentions>: [staphylococcus aureus; newman; uams-1]
<Options>: A: newmanella radiata
B: umma
C: micrococcus aureus (aka staphylococcus aureus)
D: aurococcus (aka staphylococcus)
E: newman partiti-like virus
F: uaru
G: 'staphylococcus faecalis' (aka staphylococcus faecalis)
H: newmania
I: agaribacillus aureus
J: uma
K: ... | [C; C; C] |
<Instruct>: Given the context 'It has been recently reported that ClpC affected virulence gene expression in Staphylococcus aureus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [staphylococcus aureus]
<Options>: A: staphylococcus hominis
B: staphylococcus pasteuri
C: albococcus epidermidis (aka staphylococcus epidermidis)
D: staphylococcus aureus (staphylococcus aureus subsp. anaerobius) (aka staphylococcus aureus)
E: aurococcus (aka staphylococcus)
F: None of the above. | [D] |
<Instruct>: Given the context 'Here we report that ClpC regulates transcription of the cap operon and accumulation of capsule, a major virulence factor for S. aureus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separa... | <Mentions>: [s. aureus]
<Options>: A: staphylococcus aureus subsp. anaerobius (aka staphylococcus aureus)
B: streptomyces aureus
C: streptococcus hemolyticus (aka streptococcus pyogenes)
D: staphylococcus aureus a8799
E: arthrobacter aureus ('arthrobacter aureus') (aka arthrobacter aureus)
F: None of the above. | [A] |
<Instruct>: Given the context 'As virulence genes are regulated by a complex regulatory network in S. aureus, we have used capsule as a model to understand this regulation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, ... | <Mentions>: [s. aureus]
<Options>: A: staphylococcus aureus a8799
B: staphylococcus pyogenes aureus (aka staphylococcus aureus)
C: staphylococcus epidermidis (staphylococcus epidermidis albus) (aka staphylococcus epidermidis)
D: staphylococcus equorum
E: aurococcus (aka staphylococcus)
F: None of the above. | [B] |
<Instruct>: Given the context 'By microarray analyses of strain Newman, we found that ClpC strongly activates transcription of the sae operon, whose products are known to negatively regulate capsule synthesis in this strain.', select the correct biomedical concept for each mention using the provided options. Answer by ... | <Mentions>: [newman]
<Options>: A: lysinibacillus agricola
B: dacus newmani (neodacus newmani) (aka dacus newmani)
C: fergusonina newmani
D: newmanella radiata
E: newman partiti-like virus
F: None of the above. | [F] |
<Instruct>: Given the context 'Further studies indicated that ClpC repressed capsule production by activating the sae operon in strain Newman.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [newman]
<Options>: A: newmaniana
B: globba newmanii
C: newmania
D: rhizophila
E: neodacus newmani (aka dacus newmani)
F: None of the above. | [F] |
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