instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
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<Instruct>: Given the context 'Functional characterization of Arabidopsis thaliana isopropylmalate dehydrogenases reveals their important roles in gametophyte development.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [arabidopsis thaliana]
<Options>: A: arabis thaliana (aka arabidopsis thaliana)
B: arabidopsis arenosa (cardaminopsis arenosa) (aka arabidopsis arenosa)
C: plantago cynops (aka plantago afra)
D: plantago africana
E: arabis lyrata (aka arabidopsis lyrata)
F: None of the above. | [A] |
<Instruct>: Given the context 'The Arabidopsis thaliana genome contains three putative IPMDH genes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [arabidopsis thaliana]
<Options>: A: arabis thaliana (aka arabidopsis thaliana)
B: agrotis atrux (scotia atrux) (aka agrotis atrux)
C: arabis arenosa (aka arabidopsis arenosa)
D: arabis lyrata (aka arabidopsis lyrata)
E: arabidopsis (cardaminopsis) (aka arabidopsis)
F: None of the above. | [A] |
<Instruct>: Given the context 'Demographic consequences of adult sex ratio in a reintroduced hihi population.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hihi]
<Options>: A: hinea
B: hiodon
C: hinatara
D: helicoon
E: hizikia
F: None of the above. | [F] |
<Instruct>: Given the context '3. Using a 12-year longitudinal data set of a free-living and endangered New Zealand passerine, the hihi (Notiomystis cincta), we show that a changing adult sex ratio has little or no effect on adult female survival or the number of fledglings produced per female.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hihi; notiomystis cincta]
<Options>: A: hiona
B: crenicichla cincta
C: hizikia
D: hime
E: cryptocentrus cinctus (smilogobius cinctus) (aka cryptocentrus cinctus)
F: amblyseius cinctus
G: helicoon
H: meliphaga cincta (aka notiomystis cincta)
I: hiodon
J: calathus cinctus
K: None of the above. | [H; H] |
<Instruct>: Given the context '3. Using a 12-year longitudinal data set of a free-living and endangered New Zealand passerine, the hihi (Notiomystis cincta), we show that a changing adult sex ratio has little or no effect on adult female survival or the number of fledglings produced per female.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hihi; notiomystis cincta]
<Options>: A: sigmapera cincta
B: heliconia indica
C: helice sheni (aka helicana wuana)
D: illeis cincta
E: sehirus cinctus
F: hinatara
G: notiomystis cincta (meliphaga cincta) (aka notiomystis cincta)
H: smilogobius cinctus (aka cryptocentrus cinctus)
I: hiatomyia
J: helicozoster indicus
K: None of the above. | [G; G] |
<Instruct>: Given the context 'They show amino acid sequence conservation from mosquitoes to humans, and their transcripts are highly enriched in Aedes aegypti during arbovirus infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans; aedes aegypti]
<Options>: A: aedes flavivirus
B: human (aka homo sapiens)
C: culex niveus (aka aedes niveus)
D: homopus
E: culex aegypti aegypti (aka aedes aegypti aegypti)
F: stegomyia aegypti (aka aedes aegypti)
G: great apes (aka hominidae)
H: neandertal (aka homo sapiens neanderthalensis)
I: pediculus humanus humanus (aka pediculus humanus corporis)
J: culex vittatus (aka aedes vittatus)
K: None of the above. | [B; F] |
<Instruct>: Given the context 'They show amino acid sequence conservation from mosquitoes to humans, and their transcripts are highly enriched in Aedes aegypti during arbovirus infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans; aedes aegypti]
<Options>: A: pediculus humanus humanus (aka pediculus humanus corporis)
B: culex vittatus (aka aedes vittatus)
C: homopus
D: neandertal (aka homo sapiens neanderthalensis)
E: great apes (aka hominidae)
F: culex niveus (aka aedes niveus)
G: culex aegypti aegypti (aka aedes aegypti aegypti)
H: aedes flavivirus
I: human (aka homo sapiens)
J: None of the above. | [I; J] |
<Instruct>: Given the context 'They show amino acid sequence conservation from mosquitoes to humans, and their transcripts are highly enriched in Aedes aegypti during arbovirus infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans; aedes aegypti]
<Options>: A: macrobiotus sapiens
B: human (aka homo sapiens)
C: aedes fluviatilis (aka ochlerotatus fluviatilis)
D: gymnopleurus humanus
E: human louse (aka pediculus humanus)
F: pediculus humanus humanus (aka pediculus humanus corporis)
G: aedes flavivirus
H: aedes albopictus (asian tiger mosquito) (aka aedes albopictus)
I: aedes ochraceus (culex ochraceus) (aka aedes ochraceus)
J: stegomyia aegypti (aka aedes aegypti)
K: None of the above. | [B; J] |
<Instruct>: Given the context 'Transient gene silencing of SV2 or UNC93A in mosquitoes infected with the recombinant alphavirus Sindbis MRE16-enhanced green fluorescent protein (SINV; family Togaviridae) resulted in the accumulation of viral positive- and negative-strand RNA, congregation of virus envelope antigen in intracellular networks, and reduced virus dissemination outside of the midgut.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sindbis; sinv]
<Options>: A: sinodacus
B: sindbis-like virus
C: brassica yellows virus
D: snodland virus
E: ensis
F: swine vesicular disease virus
G: sindbis virus
H: sin nombre virus (aka orthohantavirus sinnombreense)
I: sonisav virus
J: None of the above. | [G; G] |
<Instruct>: Given the context 'Transient gene silencing of SV2 or UNC93A in mosquitoes infected with the recombinant alphavirus Sindbis MRE16-enhanced green fluorescent protein (SINV; family Togaviridae) resulted in the accumulation of viral positive- and negative-strand RNA, congregation of virus envelope antigen in intracellular networks, and reduced virus dissemination outside of the midgut.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sindbis; sinv]
<Options>: A: iais
B: sindris
C: sonatrun virus
D: sindbis virus
E: sinu virus
F: sabo virus
G: snodland virus
H: sinapis aucheri (aka brassica aucheri)
I: sinodacus
J: None of the above. | [D; D] |
<Instruct>: Given the context 'Pyrethroid resistance in Sitophilus zeamais is associated with a mutation (T929I) in the voltage-gated sodium channel.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sitophilus zeamais]
<Options>: A: molophilus corniger
B: helophilus hybridus
C: sitophilus
D: sitophilus zeamais (sitophilus oryzae zeamais) (aka sitophilus zeamais)
E: agrococcus terreus
F: None of the above. | [D] |
<Instruct>: Given the context 'The maize weevil, Sitophilus zeamais, is the most important pest affecting stored grain in Brazil and its control relies heavily on the use of insecticides.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [maize weevil; sitophilus zeamais]
<Options>: A: sitophilus oryzae (rice weevil) (aka sitophilus oryzae)
B: apple weevil (aka anthonomus pomorum)
C: helicoceras oryzae
D: agrococcus terreus
E: tamarind weevil (aka sitophilus linearis)
F: tylenchus zeae
G: agromyces terreus
H: rice water weevil (aka lissorhoptrus oryzophilus)
I: maize weevil (aka sitophilus zeamais)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'The maize weevil, Sitophilus zeamais, is the most important pest affecting stored grain in Brazil and its control relies heavily on the use of insecticides.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [maize weevil; sitophilus zeamais]
<Options>: A: tamarind pod-borer (aka sitophilus linearis)
B: pea weevil (aka bruchus pisorum)
C: heterodera zeae (corn cyst nematode) (aka heterodera zeae)
D: lucerne weevil (aka sitona discoideus)
E: corn ear worm (aka helicoverpa armigera)
F: boll weevil (aka anthonomus grandis)
G: bactrocera platama (aka zeugodacus platamus)
H: maize weevil (aka sitophilus zeamais)
I: tylenchus zeae
J: None of the above. | [H; H] |
<Instruct>: Given the context 'To identify the molecular mechanisms underlying pyrethroid resistance in S. zeamais, the domain II region of the voltage-gated sodium channel (para-orthologue) gene was amplified by PCR and sequenced from susceptible and resistant laboratory S. zeamais strains that were selected with a discriminating dose of DDT.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. zeamais]
<Options>: A: zelotes sula
B: agrococcus sediminis
C: corn smut (aka mycosarcoma maydis)
D: sitophilus zeamais (sitophilus oryzae zeamais) (aka sitophilus zeamais)
E: cornigamasus
F: None of the above. | [D] |
<Instruct>: Given the context 'A single point mutation, T929I, was found in the para gene of the resistant S. zeamais populations and its presence in individual weevils was strongly associated with survival after DDT exposure.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. zeamais]
<Options>: A: scada zemira (ithomia zemira) (aka scada zemira)
B: cornigamasus lunaris (gamasus lunaris) (aka cornigamasus lunaris)
C: spermospora zeae
D: agromyces succinolyticus ('agromyces succinolyticus') (aka agromyces succinolyticus)
E: maize weevil (aka sitophilus zeamais)
F: None of the above. | [E] |
<Instruct>: Given the context 'This is the first identification of a target-site resistance mutation in S. zeamais and unusually it is a super-kdr type mutation occurring in the absence of the more common kdr (L1014F) substitution.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. zeamais]
<Options>: A: spermospora zeae
B: spermophora ziama
C: sauromalus australis
D: sitophilus oryzae zeamais (aka sitophilus zeamais)
E: corn smut (aka mycosarcoma maydis)
F: None of the above. | [D] |
<Instruct>: Given the context 'A high-throughput assay based on TaqMan single nucleotide polymorphism genotyping was developed for sensitive detection of the mutation and used to screen field-collected strains of S. zeamais.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. zeamais]
<Options>: A: sauromalus australis
B: zeuxis succinctus (aka nassarius succinctus)
C: sauropus rimophilus (aka synostemon rimophilus)
D: sitophilus zeamais (sitophilus oryzae zeamais) (aka sitophilus zeamais)
E: agrococcus sediminis
F: None of the above. | [D] |
<Instruct>: Given the context 'Functional analysis of the fungal/plant class chitinase family in Aspergillus fumigatus.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus fumigatus]
<Options>: A: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
B: aspergillus terreus (aspergillus terrestris) (aka aspergillus terreus)
C: aspergillus neoellipticus (aka aspergillus fumigatus)
D: aspergillus nidulans (eidam) g. winter, 1884 (aka aspergillus nidulans)
E: aspergillus cerealis
F: None of the above. | [C] |
<Instruct>: Given the context 'A quintuple mutant was constructed to delete the entire family of the fungal/plant (class III) chitinases of Aspergillus fumigatus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus fumigatus]
<Options>: A: aspergillus fumigatus fresen., 1863 (aka aspergillus fumigatus)
B: aspergillus rubrum (aka aspergillus ruber)
C: aspergillus terreus (aspergillus terrestris) (aka aspergillus terreus)
D: aspergillus nidulans (eidam) g. winter, 1884 (aka aspergillus nidulans)
E: aspergillus asperus (aka aspergillus asper)
F: None of the above. | [A] |
<Instruct>: Given the context 'This result demonstrated that the fungal/plant chitinases do not have an essential role in the morphogenesis of A. fumigatus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. fumigatus]
<Options>: A: aspergillus aureus
B: aspergillus rubrum (aka aspergillus ruber)
C: aspergillus cerealis
D: aspergillus aerius
E: aspergillus fumigatus (aspergillus fumigatus var. ellipticus) (aka aspergillus fumigatus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Developmental plasticity of immune defence in two life-history ecotypes of the garter snake, Thamnophis elegans - a common-environment experiment.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [garter snake; thamnophis elegans]
<Options>: A: garrulus taivanus (aka garrulus glandarius taivanus)
B: garyops
C: holbrookia elegans
D: adeuomphalus elegans
E: west coast garter snake (aka thamnophis validus)
F: mitrula elegans
G: heterorrhina elegans
H: garra fluviatilis
I: western terrestrial garter snake (aka thamnophis elegans)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'Developmental plasticity of immune defence in two life-history ecotypes of the garter snake, Thamnophis elegans - a common-environment experiment.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [garter snake; thamnophis elegans]
<Options>: A: holbrookia elegans
B: garra fluviatilis
C: garyops
D: heterorrhina elegans
E: garrulus taivanus (aka garrulus glandarius taivanus)
F: mitrula elegans
G: west coast garter snake (aka thamnophis validus)
H: adeuomphalus elegans
I: None of the above. | [I; I] |
<Instruct>: Given the context 'Developmental plasticity of immune defence in two life-history ecotypes of the garter snake, Thamnophis elegans - a common-environment experiment.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [garter snake; thamnophis elegans]
<Options>: A: mitrula elegans
B: melaphorus elegans
C: garra paralissorhynchus
D: west coast garter snake (aka thamnophis validus)
E: chrysolampus elegans
F: aphodius elegans
G: western terrestrial garter snake (aka thamnophis elegans)
H: garrulus
I: garra fluviatilis
J: None of the above. | [G; G] |
<Instruct>: Given the context 'Replicate populations of two life-history ecotypes of the garter snake Thamnophis elegans provide an ideal system in which to test this assumption.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [garter snake; thamnophis elegans]
<Options>: A: garra fluviatilis
B: garrulus
C: garrulus taivanus (aka garrulus glandarius taivanus)
D: western terrestrial garter snake (aka thamnophis elegans)
E: garra paralissorhynchus
F: heterorrhina elegans
G: chrysis elegans
H: anaphalis elegans
I: temnora elegans
J: None of the above. | [D; D] |
<Instruct>: Given the context 'Replicate populations of two life-history ecotypes of the garter snake Thamnophis elegans provide an ideal system in which to test this assumption.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [garter snake; thamnophis elegans]
<Options>: A: aphodius elegans
B: garrulus
C: garra paralissorhynchus
D: freshwater garfish (aka xenentodon cancila)
E: western terrestrial garter snake (aka thamnophis elegans)
F: pacific garter snake (aka thamnophis validus)
G: anaphalis elegans
H: tropirhinus elegans
I: holbrookia elegans
J: None of the above. | [E; E] |
<Instruct>: Given the context 'UreA, the major urea/H+ symporter in Aspergillus nidulans.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus nidulans]
<Options>: A: aspergillus nidulellus (aka aspergillus nidulans)
B: aspergillus aureolus (neosartorya aureola) (aka aspergillus aureolus)
C: aspergillus lanosus
D: aspergillus tritici (aka aspergillus neotritici)
E: aphanothece nidulans
F: None of the above. | [A] |
<Instruct>: Given the context 'We report here the characterization of UreA, a high-affinity urea/H+ symporter of Aspergillus nidulans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus nidulans]
<Options>: A: aspergillus domesticus
B: aspergillus nidulans (eidam) g. winter, 1884 (aka aspergillus nidulans)
C: aspergillus aureus
D: nassella nidulans
E: aspergillus agricola
F: None of the above. | [B] |
<Instruct>: Given the context 'The deletion of the encoding gene abolishes urea transport at low substrate concentrations, suggesting that in these conditions UreA is the sole transport system specific for urea in A. nidulans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. nidulans]
<Options>: A: aspergillus avenaceus
B: aphanothece nidulans
C: aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884) (aka aspergillus oryzae)
D: aspergillus domesticus
E: aspergillus nidulans (eidam) g. winter, 1884 (aka aspergillus nidulans)
F: None of the above. | [E] |
<Instruct>: Given the context 'In contrast to what was observed for other transporters in A. nidulans, repression by ammonium is also operative during the isotropic growth phase.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. nidulans]
<Options>: A: aspergillus aureus
B: aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884) (aka aspergillus nidulans)
C: aspergillus nidulans var. nidulans (emericella nidulans var. nidulans) (aka aspergillus nidulans var. nidulans)
D: aspergillus domesticus
E: aspergillus aureolus (neosartorya aureola) (aka aspergillus aureolus)
F: None of the above. | [B] |
<Instruct>: Given the context 'In contrast to what was observed for other transporters in A. nidulans, repression by ammonium is also operative during the isotropic growth phase.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. nidulans]
<Options>: A: aspergillus aureolus (neosartorya aureola) (aka aspergillus aureolus)
B: aspergillus domesticus
C: aspergillus aureus
D: aspergillus nidulans var. nidulans (emericella nidulans var. nidulans) (aka aspergillus nidulans var. nidulans)
E: None of the above. | [E] |
<Instruct>: Given the context 'A number of homologues of UreA have been identified in A. nidulans and other Aspergilli, which cluster in four groups, two of which contain the urea transporters characterized so far in fungi and plants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. nidulans]
<Options>: A: aspergillus nidulans var. nidulans (emericella nidulans var. nidulans) (aka aspergillus nidulans var. nidulans)
B: aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884) (aka aspergillus oryzae)
C: aspergillus fumigatus fresen., 1863 (aka aspergillus fumigatus)
D: aspergillus aureus
E: sterigmatocystis nidulans (aka aspergillus nidulans)
F: None of the above. | [E] |
<Instruct>: Given the context 'Cleavage of resveratrol in fungi: characterization of the enzyme Rco1 from Ustilago maydis.
Ustilago maydis, the causative agent of corn smut disease, contains two genes encoding members of the carotenoid cleavage oxygenase family, a group of enzymes that cleave double bonds in different substrates.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ustilago maydis; corn smut]
<Options>: A: ustilago filiformis
B: ustilago levis
C: ustilago maydis (aka mycosarcoma maydis)
D: ustilago maydis dsrna virus
E: ustilago sphaerogena
F: ustilago brizae (tilletia brizae) (aka ustilago brizae)
G: mithrax cornutus (aka nemausa cornuta)
H: ustilago esculenta
I: ustilago maydis virus
J: None of the above. | [C; C] |
<Instruct>: Given the context 'Cleavage of resveratrol in fungi: characterization of the enzyme Rco1 from Ustilago maydis.
Ustilago maydis, the causative agent of corn smut disease, contains two genes encoding members of the carotenoid cleavage oxygenase family, a group of enzymes that cleave double bonds in different substrates.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ustilago maydis; corn smut]
<Options>: A: rice false smut (aka ustilaginoidea virens)
B: ustilago nigra (aka ustilago avenae)
C: ustilago
D: ustilago filiformis
E: ustilago esculenta
F: ustilago striiformis
G: mithrax cornutus (aka nemausa cornuta)
H: corn smut (aka mycosarcoma maydis)
I: ustilago maydis dsrna virus
J: None of the above. | [H; H] |
<Instruct>: Given the context 'Here we elucidate the function of the protein encoded by the second gene, termed here as Ustilago maydis Resveratrol cleavage oxygenase 1 (Um Rco1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ustilago maydis]
<Options>: A: mycosarcoma maydis (ustilago maydis) (aka mycosarcoma maydis)
B: ustilago phragmitis
C: ustilago maydis dsrna virus
D: ustilago nigra (aka ustilago avenae)
E: ustilago sphaerogena
F: None of the above. | [A] |
<Instruct>: Given the context 'The activity of Um Rco1 was confirmed by incubation of U. maydis rco1 deletion and over-expression strains with resveratrol.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [u. maydis]
<Options>: A: ustilago maydis virus
B: ustilago virens (aka ustilaginoidea virens)
C: corn smut (aka mycosarcoma maydis)
D: ustilago esculenta
E: ustilago striiformis
F: None of the above. | [C] |
<Instruct>: Given the context 'Moreover, Um Rco1 represents a subfamily of fungal enzymes likely involved in the degradation of stilbene compounds, as suggested by the cleavage of resveratrol by homologs from Aspergillus fumigatus, Chaetomium globosum and Botryotinia fuckeliana.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus fumigatus; chaetomium globosum; botryotinia fuckeliana]
<Options>: A: aspergillus cerealis
B: aspergillus asperus (aka aspergillus asper)
C: chaetomium globosum (chaetomium rectum) (aka chaetomium globosum)
D: chaetomium globosum var. rectum
E: neosartorya fumigata (aka aspergillus fumigatus)
F: botrytis ficariarum (aka botryotinia ficariarum)
G: botryotinia globosa (botrytis globosa) (aka botryotinia globosa)
H: gnetum globosum
I: brachymenium globosum
J: aspergillus terrestris (aka aspergillus terreus)
K: aspergillus nidulans (eidam) g. winter, 1884 (aka aspergillus nidulans)
L: botrytis fuckeliana
M: botryotinia fuckeliana (aka botrytis cinerea)
N: lasioglossum globosum
O: botryotinia sphaerosperma (sclerotinia sphaerosperma) (aka botryotinia sphaerosperma)
P: None of the above. | [E; C; M] |
<Instruct>: Given the context 'Moreover, Um Rco1 represents a subfamily of fungal enzymes likely involved in the degradation of stilbene compounds, as suggested by the cleavage of resveratrol by homologs from Aspergillus fumigatus, Chaetomium globosum and Botryotinia fuckeliana.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus fumigatus; chaetomium globosum; botryotinia fuckeliana]
<Options>: A: botryotinia fuckeliana (aka botrytis cinerea)
B: aspergillus asperus (aka aspergillus asper)
C: chaetomium globosum var. rectum
D: botrytis fuckeliana
E: botryotinia sphaerosperma (sclerotinia sphaerosperma) (aka botryotinia sphaerosperma)
F: aspergillus nidulans (eidam) g. winter, 1884 (aka aspergillus nidulans)
G: botryotinia globosa (botrytis globosa) (aka botryotinia globosa)
H: botrytis ficariarum (aka botryotinia ficariarum)
I: gnetum globosum
J: chaetomium globosum (chaetomium rectum) (aka chaetomium globosum)
K: aspergillus cerealis
L: lasioglossum globosum
M: aspergillus terrestris (aka aspergillus terreus)
N: brachymenium globosum
O: None of the above. | [O; J; A] |
<Instruct>: Given the context 'Moreover, Um Rco1 represents a subfamily of fungal enzymes likely involved in the degradation of stilbene compounds, as suggested by the cleavage of resveratrol by homologs from Aspergillus fumigatus, Chaetomium globosum and Botryotinia fuckeliana.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus fumigatus; chaetomium globosum; botryotinia fuckeliana]
<Options>: A: sartorya fumigata (aka aspergillus fumigatus)
B: sclerotinia fuckeliana (aka botrytis cinerea)
C: aspergillus cerealis
D: chaetomium globosum var. rectum
E: botryosphaeria australis (aka neofusicoccum australe)
F: aspergillus nidulellus (aka aspergillus nidulans)
G: brachymenium globosum
H: chaetomium rectum (aka chaetomium globosum)
I: aspergillus terricola
J: helichrysum globosum
K: nectria fuckeliana (aka corinectria fuckeliana)
L: botrytis calthae hennebert (aka botryotinia calthae)
M: chaetomium globisporum
N: aspergillus aureus
O: botryotinia narcissicola (sclerotinia narcissicola) (aka botryotinia narcissicola)
P: None of the above. | [A; H; B] |
<Instruct>: Given the context 'Moreover, Um Rco1 represents a subfamily of fungal enzymes likely involved in the degradation of stilbene compounds, as suggested by the cleavage of resveratrol by homologs from Aspergillus fumigatus, Chaetomium globosum and Botryotinia fuckeliana.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus fumigatus; chaetomium globosum; botryotinia fuckeliana]
<Options>: A: botryosphaeria australis (aka neofusicoccum australe)
B: conophytum globosum
C: sartorya fumigata (aka aspergillus fumigatus)
D: aspergillus terricola
E: aspergillus cerealis
F: filobasidium globosum
G: botrytis ficariarum (aka botryotinia ficariarum)
H: aspergillus aureus
I: chaetomium globosum (chaetomium rectum) (aka chaetomium globosum)
J: lasioglossum globosum
K: botrydiopsis callosa
L: aspergillus terreus (aspergillus terrestris) (aka aspergillus terreus)
M: achaetomium globosum
N: botryotinia narcissicola (sclerotinia narcissicola) (aka botryotinia narcissicola)
O: botrytis cinerea (botryotinia fuckeliana) (aka botrytis cinerea)
P: None of the above. | [C; I; O] |
<Instruct>: Given the context 'Linking disease and community ecology through behavioural indicators: immunochallenge of white-footed mice and its ecological impacts.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [white-footed mice]
<Options>: A: peromyscus leucopus (white-footed mouse) (aka peromyscus leucopus)
B: peromyscus melanotis (black-eared mouse) (aka peromyscus melanotis)
C: white-footed rabbit-rat (aka conilurus albipes)
D: ethiopian white-footed mouse (aka stenocephalemys albipes)
E: fawn-colored mouse (aka mus cervicolor)
F: None of the above. | [A] |
<Instruct>: Given the context 'To explore host behavioural response to immune challenge, we exposed wild white-footed mice (Peromyscus leucopus) to an immunogen from an endemic, zoonotic pathogen, the spirochete Borrelia burgdorferi.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [white-footed mice; peromyscus leucopus; borrelia burgdorferi]
<Options>: A: borrelia afzelii (aka borreliella afzelii)
B: old world field mouse (aka apodemus agrarius)
C: faun-footed melomys (aka melomys cervinipes)
D: fawn-colored mouse (aka mus cervicolor)
E: peromyscus polius (chihuahuan mouse) (aka peromyscus polius)
F: lyme disease spirochete (aka borreliella burgdorferi)
G: peromyscus furvus
H: borrelia parkeri (spirochaeta parkeri) (aka borrelia parkeri)
I: borrelia
J: borrelia barbouri (aka borrelia lonestari)
K: peromyscus arcticus
L: peromyscus levipes (nimble-footed mouse) (aka peromyscus levipes)
M: white-footed mouse (aka peromyscus leucopus)
N: peromyscus melanotis (black-eared mouse) (aka peromyscus melanotis)
O: None of the above. | [M; M; F] |
<Instruct>: Given the context 'To explore host behavioural response to immune challenge, we exposed wild white-footed mice (Peromyscus leucopus) to an immunogen from an endemic, zoonotic pathogen, the spirochete Borrelia burgdorferi.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [white-footed mice; peromyscus leucopus; borrelia burgdorferi]
<Options>: A: borrelia parkeri (spirochaeta parkeri) (aka borrelia parkeri)
B: borrelia
C: peromyscus melanotis (black-eared mouse) (aka peromyscus melanotis)
D: peromyscus levipes (nimble-footed mouse) (aka peromyscus levipes)
E: peromyscus arcticus
F: fawn-colored mouse (aka mus cervicolor)
G: borrelia barbouri (aka borrelia lonestari)
H: old world field mouse (aka apodemus agrarius)
I: borrelia afzelii (aka borreliella afzelii)
J: peromyscus polius (chihuahuan mouse) (aka peromyscus polius)
K: peromyscus furvus
L: faun-footed melomys (aka melomys cervinipes)
M: lyme disease spirochete (aka borreliella burgdorferi)
N: None of the above. | [N; N; M] |
<Instruct>: Given the context 'To explore host behavioural response to immune challenge, we exposed wild white-footed mice (Peromyscus leucopus) to an immunogen from an endemic, zoonotic pathogen, the spirochete Borrelia burgdorferi.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [white-footed mice; peromyscus leucopus; borrelia burgdorferi]
<Options>: A: peromyscus arcticus
B: borrelia burgdorferi (aka borreliella burgdorferi)
C: peromyscus leucopus easti
D: white-footed mouse (aka peromyscus leucopus)
E: borrelia parkeri (spirochaeta parkeri) (aka borrelia parkeri)
F: borrelia burgdorferi b31 (aka borreliella burgdorferi b31)
G: white-ankled mouse (aka peromyscus pectoralis)
H: peromyscus pectoralis pectoralis
I: borrelia burgdorferi sensu lato (aka borreliella)
J: peromyscus melanotis (black-eared mouse) (aka peromyscus melanotis)
K: eurasian field mouse (aka apodemus agrarius)
L: peromyscus interparietalis
M: fawn-colored mouse (aka mus cervicolor)
N: borrelia bavariensis (aka borreliella bavariensis)
O: None of the above. | [D; D; B] |
<Instruct>: Given the context 'To explore host behavioural response to immune challenge, we exposed wild white-footed mice (Peromyscus leucopus) to an immunogen from an endemic, zoonotic pathogen, the spirochete Borrelia burgdorferi.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [white-footed mice; peromyscus leucopus; borrelia burgdorferi]
<Options>: A: white-footed rabbit-rat (aka conilurus albipes)
B: western wild mouse (aka mus spretus)
C: peromyscus maniculatus luteus
D: white-ankled mouse (aka peromyscus pectoralis)
E: white-footed climbing mouse (aka rhipidomys leucodactylus)
F: borrelia afzelii (aka borreliella afzelii)
G: borrelia garinii (aka borreliella garinii)
H: peromyscus polionotus (oldfield mouse) (aka peromyscus polionotus)
I: white-footed mouse (aka peromyscus leucopus)
J: borreliella burgdorferi (lyme disease spirochete) (aka borreliella burgdorferi)
K: borreliella americana (borrelia americana) (aka borreliella americana)
L: peromyscus arcticus
M: borrelia barbouri (aka borrelia lonestari)
N: peromyscus leucopus aridulus
O: None of the above. | [I; I; J] |
<Instruct>: Given the context 'White-footed mice are a major reservoir host of Lyme disease (LD) spirochetes in northeastern USA and an abundant member of forest communities.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [white-footed mice]
<Options>: A: ethiopian white-footed mouse (aka stenocephalemys albipes)
B: western wild mouse (aka mus spretus)
C: flat-haired mouse (aka mus platythrix)
D: white-footed mouse (aka peromyscus leucopus)
E: fawn-colored mouse (aka mus cervicolor)
F: None of the above. | [D] |
<Instruct>: Given the context 'The activity patterns, foraging behaviour, and space use of white-footed mice have implications for population growth rates of community members upon which mice incidentally prey (i.e. gypsy moths and native thrushes), as well as potentially determining host-vector encounter rates and human risk of LD.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [white-footed mice; human]
<Options>: A: ethiopian white-footed mouse (aka stenocephalemys albipes)
B: glossus humanus (cardium humanum) (aka glossus humanus)
C: great apes (aka hominidae)
D: carcharhinus humani
E: peromyscus leucopus (white-footed mouse) (aka peromyscus leucopus)
F: neandertal (aka homo sapiens neanderthalensis)
G: western wild mouse (aka mus spretus)
H: white-bellied melomys (aka melomys leucogaster)
I: human (aka homo sapiens)
J: white-footed rabbit-rat (aka conilurus albipes)
K: None of the above. | [E; I] |
<Instruct>: Given the context 'The activity patterns, foraging behaviour, and space use of white-footed mice have implications for population growth rates of community members upon which mice incidentally prey (i.e. gypsy moths and native thrushes), as well as potentially determining host-vector encounter rates and human risk of LD.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [white-footed mice; human]
<Options>: A: carcharhinus humani
B: peromyscus melanotis (black-eared mouse) (aka peromyscus melanotis)
C: sphaeria humana (aka sordaria humana)
D: nimble-footed mouse (aka peromyscus levipes)
E: human (aka homo sapiens)
F: fawn-colored mouse (aka mus cervicolor)
G: white-footed mouse (aka peromyscus leucopus)
H: glossus humanus (cardium humanum) (aka glossus humanus)
I: old world field mouse (aka apodemus agrarius)
J: homo (humans) (aka homo)
K: None of the above. | [G; E] |
<Instruct>: Given the context 'Thus, immunochallenge in white-footed mice, and potentially pathogenic infection, have the potential to indirectly impact community interactions, including those important for pathogen transmission.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [white-footed mice]
<Options>: A: black-eared mouse (aka peromyscus melanotis)
B: peromyscus pectoralis (white-ankled mouse) (aka peromyscus pectoralis)
C: old world field mouse (aka apodemus agrarius)
D: ethiopian white-footed mouse (aka stenocephalemys albipes)
E: peromyscus leucopus (white-footed mouse) (aka peromyscus leucopus)
F: None of the above. | [E] |
<Instruct>: Given the context 'The cell cycle gene MoCDC15 regulates hyphal growth, asexual development and plant infection in the rice blast pathogen Magnaporthe oryzae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rice blast pathogen; magnaporthe oryzae]
<Options>: A: rice blast fungus (aka pyricularia oryzae)
B: oryzibacter oryziterrae
C: 'rhodopseudomonas oryzae' (aka rhodopseudomonas oryzae)
D: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
E: meloidogyne oryzae
F: pleomorphomonas oryzae (pleomonas oryzae) (aka pleomorphomonas oryzae)
G: magnaporthe rhizophila (aka magnaporthiopsis rhizophila)
H: phytophthora ramorum (sudden oak death agent) (aka phytophthora ramorum)
I: magnaporthe grisea (aka pyricularia grisea)
J: None of the above. | [A; A] |
<Instruct>: Given the context 'The cell cycle gene MoCDC15 regulates hyphal growth, asexual development and plant infection in the rice blast pathogen Magnaporthe oryzae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rice blast pathogen; magnaporthe oryzae]
<Options>: A: oryzibacter oryziterrae
B: rhizobium oryzae (aka xaviernesmea oryzae)
C: rice blast fungus (aka pyricularia oryzae)
D: nigrospora oryzae (monotospora oryzae) (aka nigrospora oryzae)
E: magnaporthe poae (aka magnaporthiopsis poae)
F: rhodoplanes oryzae
G: magnaporthe grisea (aka pyricularia grisea)
H: hannaella oryzae (bullera oryzae) (aka hannaella oryzae)
I: agromyces rhizosphaerae (agromyces rhizospherae) (aka agromyces rhizosphaerae)
J: None of the above. | [C; C] |
<Instruct>: Given the context 'Rice blast, caused by the pathogen Magnaporthe oryzae, is a serious hindrance to rice production and has emerged as an important model for the characterization of molecular mechanisms relevant to pathogenic development in plants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [magnaporthe oryzae; rice]
<Options>: A: magnaporthe grisea (aka pyricularia grisea)
B: ricegrass (aka oryzopsis)
C: african wild rice (aka oryza barthii)
D: indian rice (aka oryza sativa indica group)
E: oryza sativa (asian cultivated rice) (aka oryza sativa)
F: magnaporthiopsis rhizophila (magnaporthe rhizophila) (aka magnaporthiopsis rhizophila)
G: magnaporthe oryzae b.c. couch, 2002 (aka pyricularia oryzae)
H: phaeosphaeria oryzae (trematosphaerella oryzae) (aka phaeosphaeria oryzae)
I: oryza rufipogon (common wild rice) (aka oryza rufipogon)
J: hannaella oryzae (bullera oryzae) (aka hannaella oryzae)
K: None of the above. | [G; E] |
<Instruct>: Given the context 'Rice blast, caused by the pathogen Magnaporthe oryzae, is a serious hindrance to rice production and has emerged as an important model for the characterization of molecular mechanisms relevant to pathogenic development in plants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [magnaporthe oryzae; rice]
<Options>: A: paraphaeosphaeria oryzae
B: magnaporthe poae (aka magnaporthiopsis poae)
C: magnaporthe salvinii (aka nakataea oryzae)
D: oryzihumus
E: magnaporthe oryzae (aka pyricularia oryzae)
F: red rice (aka oryza sativa)
G: monotospora oryzae (aka nigrospora oryzae)
H: red rice (aka oryza rufipogon)
I: ricegrass (aka oryzopsis)
J: oryza
K: None of the above. | [E; F] |
<Instruct>: Given the context 'Rice blast, caused by the pathogen Magnaporthe oryzae, is a serious hindrance to rice production and has emerged as an important model for the characterization of molecular mechanisms relevant to pathogenic development in plants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [magnaporthe oryzae; rice]
<Options>: A: oryza
B: monotospora oryzae (aka nigrospora oryzae)
C: paraphaeosphaeria oryzae
D: magnaporthe salvinii (aka nakataea oryzae)
E: magnaporthe poae (aka magnaporthiopsis poae)
F: ricegrass (aka oryzopsis)
G: red rice (aka oryza rufipogon)
H: oryzihumus
I: magnaporthe oryzae (aka pyricularia oryzae)
J: None of the above. | [I; J] |
<Instruct>: Given the context 'Similar to other pathogenic fungi, conidiation plays a central role in initiation of M.oryzae infection and spread over a large area.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m.oryzae]
<Options>: A: methylogaea oryzae
B: micromonospora oryzae
C: meloidogyne oryzae
D: microbispora oryzae
E: pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002) (aka pyricularia oryzae)
F: None of the above. | [E] |
<Instruct>: Given the context 'However, relatively little is known regarding the molecular mechanisms that underlie conidiation in M. oryzae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. oryzae]
<Options>: A: chitinophaga oryzae
B: magnaporthe oryzae (aka pyricularia oryzae)
C: muscodor oryzae (induratia oryzae) (aka muscodor oryzae)
D: methanobacterium oryzae
E: microbispora oryzae
F: None of the above. | [B] |
<Instruct>: Given the context 'To better characterize these mechanisms, we identified a conidiation-defective mutant, ATMT0225B6 (MoCDC15(T-DNA)), in which a T-DNA insertion disrupted a gene that encodes a homolog of fission yeast cdc15, and generated a second strain containing a disruption in the same allele (DeltaMoCDC15(T-DNA)).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [atmt0225b6; mocdc15(t-dna); yeast]
<Options>: A: saccharomyces globosus (aka saccharomyces uvarum)
B: actinomycete symbiont 3 of acromyrmex octospinosus
C: saccharomycodes
D: eukaryote marine clone ant12-2
E: binary vector pmdc32-turboidc-myc-dest
F: saccharomyces hansenii (aka debaryomyces hansenii)
G: methanothermococcus okinawensis
H: mycobacterium phage doom (mycobacteriophage doom) (aka mycobacterium phage doom)
I: binary vector pmdc32-dest-myc-turboidc
J: actinomycete symbiont 1 of acromyrmex octospinosus
K: methanogenic archaeon dcm1
L: actinomycete symbiont 4 of acromyrmex octospinosus
M: saccharomyces albicans (aka candida albicans)
N: army ant associated dicistrovirus 2
O: saccharomyces oviformis (aka saccharomyces cerevisiae)
P: None of the above. | [P; P; O] |
<Instruct>: Given the context 'To better characterize these mechanisms, we identified a conidiation-defective mutant, ATMT0225B6 (MoCDC15(T-DNA)), in which a T-DNA insertion disrupted a gene that encodes a homolog of fission yeast cdc15, and generated a second strain containing a disruption in the same allele (DeltaMoCDC15(T-DNA)).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [atmt0225b6; mocdc15(t-dna); yeast]
<Options>: A: actinomycete symbiont 3 of acromyrmex octospinosus
B: saccharomyces italicus (aka saccharomyces cerevisiae)
C: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
D: eukaryote marine clone ant12-5
E: mimopydna
F: mycobacterium phage docmcstuffins
G: saccharomyces lactis (aka kluyveromyces lactis)
H: army ant associated marafivirus 1
I: army ant associated dicistrovirus 2
J: actinomycete symbiont 4 of acromyrmex octospinosus
K: cloning vector pmdc21
L: saccharomycodes
M: mycobacteriophage cosmo (aka mycobacterium phage cosmo)
N: saccharomyces fermentati (aka torulaspora delbrueckii)
O: transmissible encephalophaty associated circular dna (aka tse-associated circular dna)
P: None of the above. | [P; P; B] |
<Instruct>: Given the context 'To better characterize these mechanisms, we identified a conidiation-defective mutant, ATMT0225B6 (MoCDC15(T-DNA)), in which a T-DNA insertion disrupted a gene that encodes a homolog of fission yeast cdc15, and generated a second strain containing a disruption in the same allele (DeltaMoCDC15(T-DNA)).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [atmt0225b6; mocdc15(t-dna); yeast]
<Options>: A: saccharomyces globosus (aka saccharomyces uvarum)
B: eukaryote marine clone ant12-4
C: binary vector pmdc32-turboidc-myc-dest
D: cloning vector pt15_t15_72bp-mkate2
E: saccharomyces rouxii (aka zygosaccharomyces rouxii)
F: saccharomycodes
G: saccharomyces oviformis (aka saccharomyces cerevisiae)
H: mycobacterium phage docmcstuffins
I: army ant associated dicistrovirus 2
J: centromedon
K: methanocaldococcaceae archaeon
L: army ant associated marafivirus 1
M: saccharomyces lactis (aka kluyveromyces lactis)
N: shuttle expression vector patm2
O: mimopydna
P: None of the above. | [P; P; G] |
<Instruct>: Given the context 'The cdc15 gene has been shown to act as a coordinator of the cell cycle in yeast.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: saccharomyces marxianus (aka kluyveromyces marxianus)
B: saccharomyces hansenii (aka debaryomyces hansenii)
C: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
D: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
E: saccharomyces globosus (aka saccharomyces uvarum)
F: None of the above. | [D] |
<Instruct>: Given the context 'Functional analysis of the MoCDC15(T-DNA) and DeltaMoCDC15(T-DNA) mutants revealed that MoCDC15 is required for conidiation, preinfection development and pathogenicity in M. oryzae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. oryzae]
<Options>: A: methanobacterium oryzae
B: eurotium oryzae (aka aspergillus oryzae)
C: magnaporthe oryzae b.c. couch, 2002 (aka pyricularia oryzae)
D: muscodor oryzae (induratia oryzae) (aka muscodor oryzae)
E: micromonospora oryzae
F: None of the above. | [C] |
<Instruct>: Given the context 'All phenotypic defects observed in mutants were rescued in a strain complemented with wild type MoCDC15.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [wild type mocdc15]
<Options>: A: moca
B: mocosoa
C: mormodes warszewiczii
D: meniscomorpha sp. wahl04new (meniscomorpha wahl04new) (aka meniscomorpha sp. wahl04new)
E: uncultured bacterium 90211com
F: None of the above. | [F] |
<Instruct>: Given the context 'Together, these data indicate that MoCDC15 functions as a coordinator of several biological processes important for pathogenic development in M. oryzae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. oryzae]
<Options>: A: micromonospora oryzae
B: methyloterricola oryzae
C: microbispora oryzae
D: meloidogyne oryzae
E: magnaporthe oryzae (aka pyricularia oryzae)
F: None of the above. | [E] |
<Instruct>: Given the context 'GintAMT2, a new member of the ammonium transporter family in the arbuscular mycorrhizal fungus Glomus intraradices.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [glomus intraradices]
<Options>: A: glomus albidum
B: glomus custos (aka rhizophagus custos)
C: glomus proliferum (aka rhizophagus prolifer)
D: glomus multiforum
E: rhizophagus intraradices (glomus intraradices) (aka rhizophagus intraradices)
F: None of the above. | [E] |
<Instruct>: Given the context 'Previously, we identified an NH(4)(+) transporter in the AM fungus Glomus intraradices (GintAMT1) involved in NH(4)(+) uptake from the soil when preset at low concentrations.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [glomus intraradices]
<Options>: A: glomus fasciculatum (aka rhizophagus fasciculatus)
B: glomus invermaium i.r. hall, 1977 (aka rhizophagus invermaius)
C: glomus indicum
D: rhizophagus iranicus (glomus iranicum) (aka rhizophagus iranicus)
E: rhizophagus intraradices (glomus intraradices) (aka rhizophagus intraradices)
F: None of the above. | [E] |
<Instruct>: Given the context 'Here, we report the isolation and characterization of a new G. intraradicesNH(4)(+) transporter gene (GintAMT2).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [g. intraradicesnh(4)]
<Options>: A: heterakis isolonche (ganguleterakis isolonche) (aka heterakis isolonche)
B: glossina hytrosavirus (aka glossinavirus glopallidipedis)
C: agrilus graminis graminis
D: rhizophagus intraradices (glomus intraradices) (aka rhizophagus intraradices)
E: thogotovirus ozense
F: None of the above. | [D] |
<Instruct>: Given the context 'Yeast mutant complementation assays showed that GintAMT2 encodes a functional NH(4)(+) transporter.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: saccharomycodes
B: saccharomyces hansenii (aka debaryomyces hansenii)
C: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
D: saccharomyces ovalis (aka malassezia furfur)
E: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
F: None of the above. | [C] |
<Instruct>: Given the context 'The structure-function relationship of the Aspergillus fumigatuscyp51A L98H conversion by site-directed mutagenesis: the mechanism of L98H azole resistance.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus fumigatuscyp51a]
<Options>: A: aspergillus fumigatus fresen., 1863 (aka aspergillus fumigatus)
B: aspergillus porosus
C: aspergillus fumigatiaffinis
D: aspergillus parvisclerotigenus (aka aspergillus flavus)
E: aspergillus fumigatus var. albus
F: None of the above. | [A] |
<Instruct>: Given the context 'The structure-function relationship of the Aspergillus fumigatuscyp51A L98H conversion by site-directed mutagenesis: the mechanism of L98H azole resistance.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus fumigatuscyp51a]
<Options>: A: aspergillus parvisclerotigenus (aka aspergillus flavus)
B: aspergillus fumigatiaffinis
C: aspergillus porosus
D: aspergillus fumigatus var. albus
E: None of the above. | [E] |
<Instruct>: Given the context 'Since 1998, the rapid emergence of multi-azole-resistance (MAR) was observed in Aspergillus fumigatus in the Netherlands.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus fumigatus]
<Options>: A: aspergillus aerius
B: aspergillus nidulellus (aka aspergillus nidulans)
C: aspergillus cerealis
D: aspergillus asper (aspergillus asperus) (aka aspergillus asper)
E: neosartorya fumigata (aka aspergillus fumigatus)
F: None of the above. | [E] |
<Instruct>: Given the context 'In this study, we show that molecular dynamics simulations combined with site-directed mutagenesis of amino acid substitutions in the cyp51A gene, correlate to the structure-function relationship of the L98H substitution conferring to MAR in A. fumigatus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. fumigatus]
<Options>: A: emericella nidulans (aka aspergillus nidulans)
B: aspergillus aerius
C: aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884) (aka aspergillus oryzae)
D: aspergillus rubrum (aka aspergillus ruber)
E: sartorya fumigata (aka aspergillus fumigatus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Furthermore, the amino acid leucine in codon 98 in A. fumigatus is highly conserved and important for maintaining the structure of the CYP51A protein that is essential for azole docking.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. fumigatus]
<Options>: A: aspergillus terricola
B: aspergillus terreus (aspergillus terrestris) (aka aspergillus terreus)
C: aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884) (aka aspergillus oryzae)
D: sartorya fumigata (aka aspergillus fumigatus)
E: aspergillus cerealis
F: None of the above. | [D] |
<Instruct>: Given the context 'To increase our understanding of population dynamics, we analysed time series from six Central European populations of the migratory red-backed shrike Lanius collurio by simultaneously assessing the strength of density dependence, process and sampling variance.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [red-backed shrike; lanius collurio]
<Options>: A: lanius collurio (red-backed shrike) (aka lanius collurio)
B: lanius
C: carthamus lanatus
D: sicyos collinus
E: rufous-tailed shrike (aka lanius isabellinus)
F: red-backed fairy wren (aka malurus melanocephalus)
G: ochthebius lanarotis
H: chinese grey shrike (aka lanius sphenocercus)
I: red-footed booby (aka sula sula)
J: None of the above. | [A; A] |
<Instruct>: Given the context 'To increase our understanding of population dynamics, we analysed time series from six Central European populations of the migratory red-backed shrike Lanius collurio by simultaneously assessing the strength of density dependence, process and sampling variance.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [red-backed shrike; lanius collurio]
<Options>: A: red-backed shrike (aka lanius collurio)
B: southern grey shrike (aka lanius meridionalis)
C: harpactus tauricus
D: croton lanatus
E: sorocephalus lanatus
F: tachysurus lani
G: harpactus picticornis
H: ichneumon lanius (aka crypteffigies lanius)
I: red-headed trogon (aka harpactes erythrocephalus)
J: None of the above. | [A; A] |
<Instruct>: Given the context 'Our findings suggest negative density-dependent regulation of red-backed shrike breeding populations and are consistent with the long-standing hypothesis that conditions in the African staging and wintering areas influence population numbers of species breeding in Europe.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [red-backed shrike]
<Options>: A: lanius collurio (red-backed shrike) (aka lanius collurio)
B: steppe grey shrike (aka lanius pallidirostris)
C: long-tailed shrike (aka lanius schach)
D: lanius nubicus (masked shrike) (aka lanius nubicus)
E: red-headed trogon (aka harpactes erythrocephalus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Regulation and function of Escherichia coli sugar efflux transporter A (SetA) during glucose-phosphate stress.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: escherichia coli c
B: escherichia
C: escherichia freundii (aka citrobacter freundii)
D: bacillus coli (aka escherichia coli)
E: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
F: None of the above. | [D] |
<Instruct>: Given the context 'Mapping of the Neisseria meningitidis NadA cell-binding site: relevance of predicted {alpha}-helices in the NH2-terminal and dimeric coiled-coil regions.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [neisseria meningitidis]
<Options>: A: neisseria ovis (aka moraxella ovis)
B: neisseria meningitidis 1101
C: neisseria meningitidis 2002020
D: merismopedia gonorrhoeae (aka neisseria gonorrhoeae)
E: micrococcus meningitidis (aka neisseria meningitidis)
F: None of the above. | [E] |
<Instruct>: Given the context 'Mapping of the Neisseria meningitidis NadA cell-binding site: relevance of predicted {alpha}-helices in the NH2-terminal and dimeric coiled-coil regions.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [neisseria meningitidis]
<Options>: A: neisseria ovis (aka moraxella ovis)
B: neisseria meningitidis 2002020
C: neisseria meningitidis 1101
D: merismopedia gonorrhoeae (aka neisseria gonorrhoeae)
E: None of the above. | [E] |
<Instruct>: Given the context 'NadA is a trimeric autotransporter protein of Neisseria meningitidis belonging to the group of oligomeric coiled-coil adhesins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [neisseria meningitidis]
<Options>: A: neisseria meningitidis 2002020
B: neisseria lactamicus (aka neisseria lactamica)
C: neisseria meningitidis 2002038
D: micrococcus gonorrhoeae (aka neisseria gonorrhoeae)
E: micrococcus meningitidis (aka neisseria meningitidis)
F: None of the above. | [E] |
<Instruct>: Given the context 'It is implicated in the colonization of the human upper respiratory tract by hypervirulent serogroup B N. meningitidis strains and is part of a multiantigen anti-serogroup B vaccine.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; n. meningitidis]
<Options>: A: neisseria meningitidis n 29/06
B: homo sapiens (human) (aka homo sapiens)
C: neisseria meningitidis n 9/04
D: great apes (aka hominidae)
E: neisseria meningitidis serogroup a (neisseria meningitidis (serogroup a)) (aka neisseria meningitidis serogroup a)
F: glossus humanus (cardium humanum) (aka glossus humanus)
G: neisseria meningitidis 2003051
H: neisseria meningitidis (micrococcus meningitidis cerebrospinalis) (aka neisseria meningitidis)
I: humans (aka homo)
J: gymnopleurus humanus
K: None of the above. | [B; H] |
<Instruct>: Given the context 'It is implicated in the colonization of the human upper respiratory tract by hypervirulent serogroup B N. meningitidis strains and is part of a multiantigen anti-serogroup B vaccine.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; n. meningitidis]
<Options>: A: micrococcus meningitidis cerebrospinalis (aka neisseria meningitidis)
B: neisseria meningitidis serogroup z
C: cardium humanum (aka glossus humanus)
D: neandertal (aka homo sapiens neanderthalensis)
E: micrococcus gonorrhoeae (aka neisseria gonorrhoeae)
F: gymnopleurus humanus
G: pediculus humanus (human louse) (aka pediculus humanus)
H: neisseria meningitidis n 5/06
I: neisseria meningitidis n 32/01
J: human (aka homo sapiens)
K: None of the above. | [J; A] |
<Instruct>: Given the context 'In this study, to better define the NadA cell binding site, we exploited (i) a panel of NadA mutants lacking sequences along the coiled-coil stalk and (ii) several oligoclonal rabbit antibodies, and their relative Fab fragments, directed to linear epitopes distributed along the NadA ectodomain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rabbit]
<Options>: A: lepus saxatilis (scrub hare) (aka lepus saxatilis)
B: domestic rabbit (aka oryctolagus cuniculus)
C: lepus cuniculus cuniculus (aka oryctolagus cuniculus cuniculus)
D: greater red rock rabbit (aka pronolagus crassicaudatus)
E: pygmy rabbit (aka brachylagus idahoensis)
F: None of the above. | [B] |
<Instruct>: Given the context 'The Burkholderia cenocepacia LysR-type transcriptional regulator ShvR influences expression of quorum-sensing, protease, type II secretion, and afc genes.
Burkholderia cenocepacia is a significant opportunistic pathogen in individuals with cystic fibrosis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [burkholderia cenocepacia]
<Options>: A: burkholderia cepacia j2315 (aka burkholderia cenocepacia j2315)
B: burkholderia cepacia (burkholderia cepacia genomovar i) (aka burkholderia cepacia)
C: burkholderia cepacia genomovar ii (aka burkholderia multivorans)
D: burkholderia cenocepacia (burkholderia cepacia genomovar iii) (aka burkholderia cenocepacia)
E: burkholderia contaminans
F: None of the above. | [D] |
<Instruct>: Given the context 'Only the shvR mutation resulted in reduced antifungal activity against Rhizoctonia solani.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizoctonia solani]
<Options>: A: pseudomonas solani
B: rhizoctonia solani virus
C: trichoderma solani
D: pucciniosira solani
E: rhizobium soli
F: None of the above. | [F] |
<Instruct>: Given the context 'Assembly of the type II secretion system: identification of ExeA residues critical for peptidoglycan binding and secretin multimerization.
Aeromonas hydrophila secretes a number of protein toxins across the outer membrane via the type II secretion system (T2SS).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aeromonas hydrophila]
<Options>: A: aeromonas enterica
B: proteus hydrophilus (aka aeromonas hydrophila)
C: aeromonas caviae (aeromonas hydrophila subsp. anaerogenes) (aka aeromonas caviae)
D: aeromonas aquatilis
E: aeromonas ichthiosmia (aka aeromonas veronii)
F: None of the above. | [B] |
<Instruct>: Given the context 'Functional analysis of molybdopterin biosynthesis in mycobacteria identifies a fused molybdopterin synthase in Mycobacterium tuberculosis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mycobacterium tuberculosis]
<Options>: A: mycobacterium album ('mycobacterium album') (aka mycobacterium album)
B: mycobacterium leprae (bacillus leprae) (aka mycobacterium leprae)
C: bacillus tuberculosis gallinarum (aka mycobacterium avium)
D: mycobacterium abscessus (aka mycobacteroides abscessus)
E: bacterium tuberculosis (aka mycobacterium tuberculosis)
F: None of the above. | [E] |
<Instruct>: Given the context 'Functional analysis of molybdopterin biosynthesis in mycobacteria identifies a fused molybdopterin synthase in Mycobacterium tuberculosis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mycobacterium tuberculosis]
<Options>: A: mycobacterium abscessus (aka mycobacteroides abscessus)
B: mycobacterium leprae (bacillus leprae) (aka mycobacterium leprae)
C: mycobacterium album ('mycobacterium album') (aka mycobacterium album)
D: bacillus tuberculosis gallinarum (aka mycobacterium avium)
E: None of the above. | [E] |
<Instruct>: Given the context 'A mutant of M. tuberculosis lacking the moaA1-moaD1 gene cluster and a derivative in which moaD2 was also deleted were significantly impaired for growth in media containing nitrate as a sole nitrogen source, indicating a reduced availability of MoCo to support the assimilatory function of the MoCo-dependent nitrate reductase, NarGHI.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. tuberculosis]
<Options>: A: mycobacterium tuberculosis h37ra (mycobacterium tuberculosis strain h37ra) (aka mycobacterium tuberculosis h37ra)
B: bacterium tuberculosis (aka mycobacterium tuberculosis)
C: bacillus tuberculosis gallinarum (aka mycobacterium avium)
D: mycobacterium tuberculosis h37rv (mycobacterium tuberculosis strain h37rv) (aka mycobacterium tuberculosis h37rv)
E: mycobacterium tuberculosis h37rvae
F: None of the above. | [B] |
<Instruct>: Given the context 'The M. tuberculosis moaD and moaE homologs were further analyzed by expressing these genes in mutant strains of M. smegmatis that lacked one or both of the sole molybdopterin (MPT) synthase-encoding genes, moaD2 and moaE2, and were unable to grow on nitrate, presumably as a result of the loss of MoCo-dependent nitrate assimilatory activity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. tuberculosis; m. smegmatis]
<Options>: A: mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (aka mycolicibacterium smegmatis)
B: mycobacterium tuberculosis complex (mycobacterium complex) (aka mycobacterium tuberculosis complex)
C: mycobacterium phlei (aka mycolicibacterium phlei)
D: mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980) (aka mycobacterium tuberculosis)
E: mycobacterium peregrinum (aka mycolicibacterium peregrinum)
F: mycobacterium vaccae (aka mycolicibacterium vaccae)
G: mycobacterium marinum (mycobacterium platypoecilus) (aka mycobacterium marinum)
H: mycobacterium tuberculosis strain h37rv (aka mycobacterium tuberculosis h37rv)
I: bacillus tuberculosis gallinarum (aka mycobacterium avium)
J: None of the above. | [D; A] |
<Instruct>: Given the context 'The M. tuberculosis moaD and moaE homologs were further analyzed by expressing these genes in mutant strains of M. smegmatis that lacked one or both of the sole molybdopterin (MPT) synthase-encoding genes, moaD2 and moaE2, and were unable to grow on nitrate, presumably as a result of the loss of MoCo-dependent nitrate assimilatory activity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. tuberculosis; m. smegmatis]
<Options>: A: mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (aka mycolicibacterium smegmatis)
B: mycobacterium tuberculosis h37rvae
C: mycobacterium anthracenicum ('mycobacterium anthracenicum') (aka mycobacterium anthracenicum)
D: mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980)) (aka mycobacterium)
E: mycobacterium tuberculosis subsp. tuberculosis
F: mycobacterium novum
G: bacterium tuberculosis (aka mycobacterium tuberculosis)
H: mycobacterium phlei (aka mycolicibacterium phlei)
I: mycolicibacterium smegmatis mc2 51 (mycobacterium smegmatis mc2 51) (aka mycolicibacterium smegmatis mc2 51)
J: None of the above. | [G; A] |
<Instruct>: Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. tuberculosis; m. smegmatis]
<Options>: A: mycolicibacterium smegmatis mc2 51 (mycobacterium smegmatis mc2 51) (aka mycolicibacterium smegmatis mc2 51)
B: mycobacterium tuberculosis typus humanus (aka mycobacterium tuberculosis)
C: mycobacterium phlei (aka mycolicibacterium phlei)
D: mycobacterium tuberculosis avium (aka mycobacterium avium)
E: mycobacterium murale (aka mycolicibacterium murale)
F: bacterium smegmatis (aka mycolicibacterium smegmatis)
G: mycobacterium tuberculosis complex (mycobacterium complex) (aka mycobacterium tuberculosis complex)
H: mycobacterium peregrinum (aka mycolicibacterium peregrinum)
I: mycobacterium leprae (bacillus leprae) (aka mycobacterium leprae)
J: None of the above. | [B; F] |
<Instruct>: Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. tuberculosis; m. smegmatis]
<Options>: A: mycobacterium tuberculosis avium (aka mycobacterium avium)
B: mycobacterium tuberculosis subsp. tuberculosis
C: bacillus tuberculosis (aka mycobacterium tuberculosis)
D: mycobacterium tuberculosis h37rvae
E: mycobacterium phlei (aka mycolicibacterium phlei)
F: mycobacterium lactis ('mycobacterium lactis') (aka mycobacterium lactis)
G: mycolicibacterium smegmatis mkd8 (mycobacterium smegmatis mkd8) (aka mycolicibacterium smegmatis mkd8)
H: mycobacterium tuberculosis strain h37ra (aka mycobacterium tuberculosis h37ra)
I: bacterium smegmatis (aka mycolicibacterium smegmatis)
J: mycolicibacterium smegmatis mc2 51 (mycobacterium smegmatis mc2 51) (aka mycolicibacterium smegmatis mc2 51)
K: None of the above. | [C; I] |
<Instruct>: Given the context 'Expression of M. tuberculosis moaX also restored MoCo biosynthesis in M. smegmatis mutants lacking moaD2, moaE2, or both, thus identifying MoaX as a fused MPT synthase.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. tuberculosis; m. smegmatis]
<Options>: A: mycobacterium tuberculosis h37rvae
B: bacterium smegmatis (aka mycolicibacterium smegmatis)
C: mycobacterium tuberculosis typus humanus (aka mycobacterium tuberculosis)
D: mycobacterium marinum (mycobacterium platypoecilus) (aka mycobacterium marinum)
E: mycobacterium coloregonium (aka mycobacterium talmoniae)
F: mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980)) (aka mycobacterium)
G: mycobacterium abscessus (aka mycobacteroides abscessus)
H: mycolicibacterium smegmatis mc2 51 (mycobacterium smegmatis mc2 51) (aka mycolicibacterium smegmatis mc2 51)
I: mycobacterium murale (aka mycolicibacterium murale)
J: mycobacterium tuberculosis complex (mycobacterium complex) (aka mycobacterium tuberculosis complex)
K: None of the above. | [C; B] |
<Instruct>: Given the context 'Expression of M. tuberculosis moaX also restored MoCo biosynthesis in M. smegmatis mutants lacking moaD2, moaE2, or both, thus identifying MoaX as a fused MPT synthase.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. tuberculosis; m. smegmatis]
<Options>: A: mycobacterium leprae (bacillus leprae) (aka mycobacterium leprae)
B: mycolicibacterium smegmatis (mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980)) (aka mycolicibacterium smegmatis)
C: mycobacterium bovis (aka mycobacterium tuberculosis variant bovis)
D: mycobacterium abscessus (aka mycobacteroides abscessus)
E: mycolicibacterium smegmatis mc2 51 (mycobacterium smegmatis mc2 51) (aka mycolicibacterium smegmatis mc2 51)
F: mycobacterium talmoniae ('mycobacterium coloregonium') (aka mycobacterium talmoniae)
G: mycobacterium tuberculosis h37rvae
H: mycobacterium lactis ('mycobacterium lactis') (aka mycobacterium lactis)
I: mycobacterium tuberculosis var. hominis (aka mycobacterium tuberculosis)
J: mycobacterium peregrinum (aka mycolicibacterium peregrinum)
K: None of the above. | [I; B] |
<Instruct>: Given the context 'By implicating multiple synthase-encoding homologs in MoCo biosynthesis, these results suggest that important cellular functions may be served by their expansion in M. tuberculosis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. tuberculosis]
<Options>: A: mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980)) (aka mycobacterium)
B: mycobacterium bovis (aka mycobacterium tuberculosis variant bovis)
C: mycobacterium phlei (aka mycolicibacterium phlei)
D: mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980)) (aka mycobacterium tuberculosis)
E: mycobacterium tuberculosis h37ra (mycobacterium tuberculosis strain h37ra) (aka mycobacterium tuberculosis h37ra)
F: None of the above. | [D] |
<Instruct>: Given the context 'The nodulation of alfalfa by the acid-tolerant Rhizobium sp. strain LPU83 does not require sulfated forms of lipochitooligosaccharide nodulation signals.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizobium sp. strain lpu83]
<Options>: A: rhizobium sp. ls-1233
B: rhizobium sp. p-26
C: rhizobium sp. hbu08134
D: rhizobium sp. usda 3883
E: rhizobium sp. p-8
F: None of the above. | [F] |
<Instruct>: Given the context 'We present here a description of the genetic organization of the nod gene cluster and the characterization of the chemical structure of the NFs associated with the broad-host-range Rhizobium sp. strain LPU83, a bacterium capable of nodulating at least alfalfa, bean, and Leucena leucocephala.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizobium sp. strain lpu83; alfalfa; leucena leucocephala]
<Options>: A: rhizobium sp. lr78
B: arundinicola leucocephala
C: rhizobium sp. 8203
D: medica italica (aka medicago italica)
E: rhizobium sp. lr68
F: lucerne (aka medicago sativa)
G: euphorbia leucocephala
H: hydrocotyle leucocephala
I: medicago hypogaea
J: verticillium alfalfae
K: rhizobium sp. s93
L: armeria leucocephala
M: leucaena glauca (aka leucaena leucocephala)
N: rhizobium sp. ufla4-71
O: medicago saxatilis
P: None of the above. | [P; F; M] |
<Instruct>: Given the context 'We present here a description of the genetic organization of the nod gene cluster and the characterization of the chemical structure of the NFs associated with the broad-host-range Rhizobium sp. strain LPU83, a bacterium capable of nodulating at least alfalfa, bean, and Leucena leucocephala.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizobium sp. strain lpu83; alfalfa; leucena leucocephala]
<Options>: A: rhizobium sp. lr68
B: rhizobium sp. ml83
C: arundinicola leucocephala
D: rhizobium sp. ufla4-71
E: depressaria leucocephala
F: alsine leucocephaloides (aka minuartia leucocephaloides)
G: medicago lupulina
H: medicago murex
I: alfalfa caterpillar (aka colias eurytheme)
J: colius leucocephalus
K: rhizobium sp. an83
L: lucerne (aka medicago sativa)
M: rhizobium sp. lr78
N: leucaena glauca (aka leucaena leucocephala)
O: medicago arborea
P: None of the above. | [P; L; N] |
<Instruct>: Given the context 'We present here a description of the genetic organization of the nod gene cluster and the characterization of the chemical structure of the NFs associated with the broad-host-range Rhizobium sp. strain LPU83, a bacterium capable of nodulating at least alfalfa, bean, and Leucena leucocephala.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizobium sp. strain lpu83; alfalfa; leucena leucocephala]
<Options>: A: medicago hybrida (trigonella hybrida) (aka medicago hybrida)
B: depressaria leucocephala
C: halcyon leucocephala (alcedo leucocephala) (aka halcyon leucocephala)
D: yellow-flower alfalfa (aka medicago sativa subsp. falcata)
E: medicago murex
F: rhizobium sp. ufla4-68
G: rhizobium sp. an83
H: rhizobium sp. p-8
I: lucerne (aka medicago sativa)
J: hydrocotyle leucocephala
K: alfalfa caterpillar (aka colias eurytheme)
L: rhizobium sp. p-26
M: euphorbia leucocephala
N: white popinac (aka leucaena leucocephala)
O: rhizobium sp. hrrk183
P: None of the above. | [P; I; N] |
<Instruct>: Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [alfalfa; sinorhizobium meliloti; sinorhizobium medicae]
<Options>: A: sinorhizobium medicae (sinorhizobium medicae rome et al. 1996) (aka sinorhizobium medicae)
B: verticillium alfalfae
C: ensifer meliloti (aka sinorhizobium meliloti)
D: medicago lupulina
E: mesorhizobium loti (rhizobium loti) (aka mesorhizobium loti)
F: mesorhizobium japonicum
G: medicago murex
H: solanum medicagineum
I: sinorhizobium medicae m22
J: yellow-flower alfalfa (aka medicago sativa subsp. falcata)
K: sinorhizobium arboris (sinorhizobium arboris nick et al. 1999) (aka sinorhizobium arboris)
L: sinorhizobium meliloti kh16b
M: lucerne (aka medicago sativa)
N: sinorhizobium meliloti kh35b
O: rhizobium gallicum
P: None of the above. | [M; C; A] |
<Instruct>: Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [alfalfa; sinorhizobium meliloti; sinorhizobium medicae]
<Options>: A: sinorhizobium meliloti m10
B: sinorhizobium meliloti usda 1021
C: medicago murex
D: barrel medic (aka medicago truncatula)
E: sinorhizobium arboris (sinorhizobium arboris nick et al. 1999) (aka sinorhizobium arboris)
F: ensifer medicae (aka sinorhizobium medicae)
G: lucerne (aka medicago sativa)
H: sinorhizobium meliloti kh30a
I: solanum medicagineum
J: mesorhizobium japonicum
K: medicago hybrida (trigonella hybrida) (aka medicago hybrida)
L: medicago saxatilis
M: rhizobium meliloti (aka sinorhizobium meliloti)
N: medicago suffruticosa
O: None of the above. | [G; M; F] |
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