instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
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<Instruct>: Given the context 'Expression of M. tuberculosis moaD2 in the M. smegmatis moaD2 mutant and of M. tuberculosis moaE1 or moaE2 in the M. smegmatis moaE2 mutant restored nitrate assimilation, confirming the functionality of these genes in MPT synthesis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. tuberculosis; m. smegmatis]
<Options>: A: mycobacterium novum
B: mycobacterium tuberculosis (mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980)) (aka mycobacterium tuberculosis)
C: mycolicibacterium smegmatis mkd8 (mycobacterium smegmatis mkd8) (aka mycolicibacterium smegmatis mkd8)
D: mycobacterium leprae (bacillus leprae) (aka mycobacterium leprae)
E: mycolicibacterium smegmatis mc2 51 (mycobacterium smegmatis mc2 51) (aka mycolicibacterium smegmatis mc2 51)
F: mycobacterium lactis ('mycobacterium lactis') (aka mycobacterium lactis)
G: mycobacterium bovis (aka mycobacterium tuberculosis variant bovis)
H: mycobacterium smegmatis (trevisan 1889) lehmann and neumann 1899 (approved lists 1980) (aka mycolicibacterium smegmatis)
I: mycobacterium tuberculosis h37ra (mycobacterium tuberculosis strain h37ra) (aka mycobacterium tuberculosis h37ra)
J: mycobacterium tuberculosis h37rvae
K: None of the above. | [B; H] |
<Instruct>: Given the context 'Expression of M. tuberculosis moaX also restored MoCo biosynthesis in M. smegmatis mutants lacking moaD2, moaE2, or both, thus identifying MoaX as a fused MPT synthase.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. tuberculosis; m. smegmatis]
<Options>: A: mycobacterium peregrinum (aka mycolicibacterium peregrinum)
B: mycobacterium terrae (aka mycolicibacter terrae)
C: bacterium smegmatis (aka mycolicibacterium smegmatis)
D: mycobacterium leprae (bacillus leprae) (aka mycobacterium leprae)
E: mycolicibacterium smegmatis mkd8 (mycobacterium smegmatis mkd8) (aka mycolicibacterium smegmatis mkd8)
F: mycobacterium tuberculosis h37rvae
G: mycobacterium phlei (aka mycolicibacterium phlei)
H: mycobacterium tuberculosis typus humanus (aka mycobacterium tuberculosis)
I: mycobacterium tuberculosis avium (aka mycobacterium avium)
J: None of the above. | [H; C] |
<Instruct>: Given the context 'Expression of M. tuberculosis moaX also restored MoCo biosynthesis in M. smegmatis mutants lacking moaD2, moaE2, or both, thus identifying MoaX as a fused MPT synthase.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. tuberculosis; m. smegmatis]
<Options>: A: mycobacterium tuberculosis h37rv (mycobacterium tuberculosis strain h37rv) (aka mycobacterium tuberculosis h37rv)
B: mycobacterium leprae (bacillus leprae) (aka mycobacterium leprae)
C: mycobacterium tuberculosis h37ra (mycobacterium tuberculosis strain h37ra) (aka mycobacterium tuberculosis h37ra)
D: mycobacterium tuberculosis (zopf 1883) lehmann and neumann 1896 (approved lists 1980) (aka mycobacterium tuberculosis)
E: mycobacterium peregrinum (aka mycolicibacterium peregrinum)
F: bacterium smegmatis (aka mycolicibacterium smegmatis)
G: mycobacterium anthracenicum ('mycobacterium anthracenicum') (aka mycobacterium anthracenicum)
H: mycobacterium lactis ('mycobacterium lactis') (aka mycobacterium lactis)
I: mycobacterium vaccae (aka mycolicibacterium vaccae)
J: mycobacterium tuberculosis avium (aka mycobacterium avium)
K: None of the above. | [D; F] |
<Instruct>: Given the context 'By implicating multiple synthase-encoding homologs in MoCo biosynthesis, these results suggest that important cellular functions may be served by their expansion in M. tuberculosis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. tuberculosis]
<Options>: A: mycobacterium (mycobacterium lehmann and neumann 1896 (approved lists 1980)) (aka mycobacterium)
B: mycobacterium leprae (bacillus leprae) (aka mycobacterium leprae)
C: mycobacterium abscessus (aka mycobacteroides abscessus)
D: mycobacterium tuberculosis subsp. tuberculosis
E: mycobacterium tuberculosis var. hominis (aka mycobacterium tuberculosis)
F: None of the above. | [E] |
<Instruct>: Given the context 'The nodulation of alfalfa by the acid-tolerant Rhizobium sp. strain LPU83 does not require sulfated forms of lipochitooligosaccharide nodulation signals.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizobium sp. strain lpu83]
<Options>: A: rhizobium sp. lr78
B: rhizobium sp. hbu08134
C: rhizobium sp. an83
D: rhizobium sp. 8211
E: rhizobium sp. lr77
F: None of the above. | [F] |
<Instruct>: Given the context 'We present here a description of the genetic organization of the nod gene cluster and the characterization of the chemical structure of the NFs associated with the broad-host-range Rhizobium sp. strain LPU83, a bacterium capable of nodulating at least alfalfa, bean, and Leucena leucocephala.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizobium sp. strain lpu83; alfalfa; leucena leucocephala]
<Options>: A: rhizobium sp. r46283
B: depressaria leucocephala
C: baccharis leucocephala
D: rhizobium sp. 8211
E: medicago saxatilis
F: rhizobium sp. p-26
G: white popinac (aka leucaena leucocephala)
H: rhizobium sp. hrrk183
I: alfalfa caterpillar (aka colias eurytheme)
J: rhizobium sp. lr77
K: alsine leucocephaloides (aka minuartia leucocephaloides)
L: cyperus leucocephalus
M: alfalfa (aka medicago sativa)
N: medicago sativa subsp. falcata (yellow-flower alfalfa) (aka medicago sativa subsp. falcata)
O: medicago italica (medica italica) (aka medicago italica)
P: None of the above. | [P; M; G] |
<Instruct>: Given the context 'We present here a description of the genetic organization of the nod gene cluster and the characterization of the chemical structure of the NFs associated with the broad-host-range Rhizobium sp. strain LPU83, a bacterium capable of nodulating at least alfalfa, bean, and Leucena leucocephala.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizobium sp. strain lpu83; alfalfa; leucena leucocephala]
<Options>: A: colius leucocephalus
B: medicago sativa subsp. falcata (yellow-flower alfalfa) (aka medicago sativa subsp. falcata)
C: medicago hybrida (trigonella hybrida) (aka medicago hybrida)
D: rhizobium sp. hrrk183
E: halcyon leucocephala (alcedo leucocephala) (aka halcyon leucocephala)
F: alfalfa (aka medicago sativa)
G: rhizobium sp. ufla4-68
H: medicago truncatula (barrel medic) (aka medicago truncatula)
I: white popinac (aka leucaena leucocephala)
J: medicago heyniana
K: rhizobium sp. ls-079
L: rhizobium sp. lr77
M: rhizobium sp. s93
N: arundinicola leucocephala
O: euphorbia leucocephala
P: None of the above. | [P; F; I] |
<Instruct>: Given the context 'We present here a description of the genetic organization of the nod gene cluster and the characterization of the chemical structure of the NFs associated with the broad-host-range Rhizobium sp. strain LPU83, a bacterium capable of nodulating at least alfalfa, bean, and Leucena leucocephala.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizobium sp. strain lpu83; alfalfa; leucena leucocephala]
<Options>: A: rhizobium sp. ls-1233
B: rhizobium sp. r46283
C: rhizobium sp. usda 3883
D: medicago italica (medica italica) (aka medicago italica)
E: medicago hybrida (trigonella hybrida) (aka medicago hybrida)
F: lucerne (aka medicago sativa)
G: turdoides leucocephala
H: verticillium alfalfae
I: depressaria leucocephala
J: siphlophis leucocephalus (leptodira leucocephalus) (aka siphlophis leucocephalus)
K: yellow-flower alfalfa (aka medicago sativa subsp. falcata)
L: baccharis leucocephala
M: rhizobium sp. 1003
N: rhizobium sp. hrrk183
O: white popinac (aka leucaena leucocephala)
P: None of the above. | [P; F; O] |
<Instruct>: Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [alfalfa; sinorhizobium meliloti; sinorhizobium medicae]
<Options>: A: alfalfa (aka medicago sativa)
B: sinorhizobium meliloti kh35b
C: medicago hybrida (trigonella hybrida) (aka medicago hybrida)
D: medicago lupulina
E: sinorhizobium meliloti m10
F: solanum medicagineum
G: medicago (medics) (aka medicago)
H: sinorhizobium medicae kh36c
I: medicago saxatilis
J: sinorhizobium meliloti kh12g
K: bradyrhizobium vignae
L: ensifer meliloti (aka sinorhizobium meliloti)
M: rhizobium meliloti (aka sinorhizobium meliloti)
N: sinorhizobium meliloti kh30a
O: sinorhizobium medicae rome et al. 1996 (aka sinorhizobium medicae)
P: None of the above. | [A; M; O] |
<Instruct>: Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [alfalfa; sinorhizobium meliloti; sinorhizobium medicae]
<Options>: A: sinorhizobium meliloti kh30a
B: mesorhizobium japonicum
C: sinorhizobium medicae (sinorhizobium medicae rome et al. 1996) (aka sinorhizobium medicae)
D: ensifer medicae (aka sinorhizobium medicae)
E: sinorhizobium meliloti usda 1002
F: medicago murex
G: medicago marina
H: medicago saxatilis
I: bradyrhizobium vignae
J: sinorhizobium medicae kh36d
K: medica italica (aka medicago italica)
L: alfalfa (aka medicago sativa)
M: sinorhizobium medicae kh53b
N: sinorhizobium meliloti kh16b
O: ensifer meliloti (aka sinorhizobium meliloti)
P: None of the above. | [L; O; D] |
<Instruct>: Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [alfalfa; sinorhizobium meliloti; sinorhizobium medicae]
<Options>: A: medicago arborea
B: ensifer medicae (aka sinorhizobium medicae)
C: mesorhizobium sophorae
D: verticillium alfalfae
E: sinorhizobium medicae kh36b
F: bradyrhizobium vignae
G: sinorhizobium meliloti (sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994) (aka sinorhizobium meliloti)
H: medicago (medics) (aka medicago)
I: sinorhizobium meliloti usda 1021
J: alfalfa (aka medicago sativa)
K: sinorhizobium arboris (sinorhizobium arboris nick et al. 1999) (aka sinorhizobium arboris)
L: sinorhizobium meliloti kh30a
M: sinorhizobium medicae kh36d
N: medicago italica (medica italica) (aka medicago italica)
O: None of the above. | [J; G; B] |
<Instruct>: Given the context 'Interestingly, the strongest sequence similarity observed was between the partial nod sequences of Rhizobium mongolense USDA 1844 and the corresponding LPU83 nod genes sequences.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizobium mongolense usda 1844; lpu83]
<Options>: A: rhizobium gallicum
B: rhizobium tibeticum
C: plutonaster
D: urt cloning vector pkp77
E: rhizobium oryzicola
F: rhizobium binae
G: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
H: bacterium urfm83
I: shuttle vector pmtl83151
J: legionella-like amoebal pathogen 8 (llap 8) (aka legionella-like amoebal pathogen 8)
K: None of the above. | [G; K] |
<Instruct>: Given the context 'Interestingly, the strongest sequence similarity observed was between the partial nod sequences of Rhizobium mongolense USDA 1844 and the corresponding LPU83 nod genes sequences.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizobium mongolense usda 1844; lpu83]
<Options>: A: saccharomyces cerevisiae p283
B: lon
C: rhizobium zeae
D: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
E: rhizobium kunmingense
F: bacterium urfm83
G: rhizobium mongolense usda 1844 (rhizobium mongolense strain usda 1844) (aka rhizobium mongolense usda 1844)
H: rhizobium tubonense
I: uaru
J: arctic ground squirrel (aka urocitellus parryii)
K: None of the above. | [D; K] |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; r. mongolense 1844; rhizobium sp. strain lpu83; alfalfa]
<Options>: A: arctic ground squirrel (aka urocitellus parryii)
B: llap 9 (aka legionella-like amoebal pathogen 9)
C: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
D: barrel medic (aka medicago truncatula)
E: rhizobium sp. ls-079
F: medicago heyniana
G: r. hypomalacus (aka rubus hypomalacus)
H: rhipicephalus nitens
I: rhodymenia rhizoides
J: medicago hypogaea
K: ulva picorna-like virus 1
L: rhizobium sp. hrrk183
M: rhododendron macrophyllum
N: rhizobium sp. ml83
O: rhizobium sp. p-26
P: medicago italica (medica italica) (aka medicago italica)
Q: alfalfa (aka medicago sativa)
R: saccharomyces cerevisiae sgu57
S: rhizobium sp. ufla4-68
T: yeast expression vector pjg483
U: None of the above. | [U; C; U; Q] |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; r. mongolense 1844; rhizobium sp. strain lpu83; alfalfa]
<Options>: A: ula
B: alfalfa (aka medicago sativa)
C: plutonaster
D: arctic ground squirrel (aka urocitellus parryii)
E: medics (aka medicago)
F: medicago saxatilis
G: shuttle vector pmtl83151
H: rhododrilus
I: rhizobium terricola
J: medicago arborea
K: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
L: rhizobium sp. ufla4-71
M: rhizobium sp. lr78
N: rhipicephalus congolensis
O: rhizobium sp. p-8
P: barrel medic (aka medicago truncatula)
Q: rhodymenia rhizoides
R: llap 9 (aka legionella-like amoebal pathogen 9)
S: rhizobium sp. 1003
T: rhizobium sp. ls-1233
U: None of the above. | [U; K; U; B] |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; r. mongolense 1844; rhizobium sp. strain lpu83; alfalfa]
<Options>: A: llap 8 (aka legionella-like amoebal pathogen 8)
B: rhizobium sp. ufla4-71
C: saccharomyces cerevisiae p283
D: ulva picorna-like virus 3
E: rhizobium sp. lb11
F: medicago marina
G: rhizobium sp. hbu08134
H: yeast expression vector pjg483
I: alfalfa caterpillar (aka colias eurytheme)
J: r. hypomalacus (aka rubus hypomalacus)
K: rhododendron lacteum
L: medicago hybrida (trigonella hybrida) (aka medicago hybrida)
M: medicago murex
N: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
O: rhodymenia rhizoides
P: rhizobium sp. ls-079
Q: rhodococcus oryzae
R: rhizobium sp. r46283
S: alfalfa (aka medicago sativa)
T: lon
U: None of the above. | [U; N; U; S] |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; r. mongolense 1844; rhizobium sp. strain lpu83; alfalfa]
<Options>: A: oryza rhizomatis
B: lon
C: rhizobium sp. lr68
D: rhizobium sp. ml83
E: medicago hypogaea
F: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
G: rhizobium sp. an83
H: rhizobium sp. p-26
I: medicago sativa subsp. falcata (yellow-flower alfalfa) (aka medicago sativa subsp. falcata)
J: urt cloning vector pkp77
K: rhododendron macrophyllum
L: rhododendron lacteum
M: verticillium alfalfae
N: uaru
O: rhizobium oryzicola
P: bacterium lgm83
Q: plutonaster
R: rhizobium sp. ls-1233
S: medicago hybrida (trigonella hybrida) (aka medicago hybrida)
T: alfalfa (aka medicago sativa)
U: None of the above. | [U; F; U; T] |
<Instruct>: Given the context 'Remarkably, while in strain LPU83 most of the NFs were sulfated in their reducing terminal residue, none of the NFs isolated from the nodH mutant LPU83-H were sulfated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; lpu83-h]
<Options>: A: helianthus annus leaf-associated partitivirus 5
B: helianthus annuus leaf-associated partitivirus 3
C: plutonaster
D: ula
E: listeria phage lp-083-1
F: bacterium urfm83
G: shuttle vector pmtl83151
H: planctomycete enrichment culture clone liuu-12-2
I: hubei partiti-like virus 52
J: arctic ground squirrel (aka urocitellus parryii)
K: None of the above. | [K; K] |
<Instruct>: Given the context 'Remarkably, while in strain LPU83 most of the NFs were sulfated in their reducing terminal residue, none of the NFs isolated from the nodH mutant LPU83-H were sulfated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; lpu83-h]
<Options>: A: llap 9 (aka legionella-like amoebal pathogen 9)
B: llap 8 (aka legionella-like amoebal pathogen 8)
C: hubei partiti-like virus 58
D: urt cloning vector pkp77
E: fungal clone uuf-68
F: saccharomyces cerevisiae sgu57
G: hubei partiti-like virus 48
H: listeria phage lp-083-2
I: helianthus annus leaf-associated partitivirus 5
J: plutonaster
K: None of the above. | [K; K] |
<Instruct>: Given the context 'The evidence obtained supports the notion that the sulfate decoration of NFs in LPU83 is not necessary for alfalfa nodulation.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; alfalfa]
<Options>: A: alfalfa (aka medicago sativa)
B: shuttle vector pmtl83151
C: lon
D: medicago saxatilis
E: uaru
F: saccharomyces cerevisiae p283
G: fungal clone uuf-68
H: medicago marina
I: medicago hypogaea
J: medicago murex
K: None of the above. | [K; A] |
<Instruct>: Given the context 'The evidence obtained supports the notion that the sulfate decoration of NFs in LPU83 is not necessary for alfalfa nodulation.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; alfalfa]
<Options>: A: fungal clone uuf-68
B: medicago heyniana
C: ulva picorna-like virus 3
D: saccharomyces cerevisiae p283
E: mammalian expression vector psa83
F: ula
G: barrel medic (aka medicago truncatula)
H: medicago marina
I: lucerne (aka medicago sativa)
J: medicago (medics) (aka medicago)
K: None of the above. | [K; I] |
<Instruct>: Given the context 'Plantazolicin, a novel microcin B17/streptolysin S-like natural product from Bacillus amyloliquefaciens FZB42.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus amyloliquefaciens fzb42]
<Options>: A: bacillus amyloliquefaciens fzb42 (aka bacillus velezensis fzb42)
B: bacillus amyloliquefaciens ab01
C: bacillus amyloliquefaciens ucmb5140
D: bacillus amyloliquefaciens (bacillus amyloliquefaciens subsp. amyloliquefaciens) (aka bacillus amyloliquefaciens)
E: bacillus amyloliquefaciens umaf6639
F: None of the above. | [D] |
<Instruct>: Given the context 'Here we report on a novel thiazole/oxazole-modified microcin (TOMM) from Bacillus amyloliquefaciens FZB42, a Gram-positive soil bacterium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus amyloliquefaciens fzb42]
<Options>: A: bacillus amyloliquefaciens ap71
B: bacillus amyloliquefaciens subsp. amyloliquefaciens (aka bacillus amyloliquefaciens)
C: bacillus amyloliquefaciens ucmb5140
D: bacillus amyloliquefaciens ucmb5007
E: bacillus amyloliquefaciens hb-26
F: None of the above. | [B] |
<Instruct>: Given the context 'Like microcin B17 and streptolysin S, the TOMM from B. amyloliquefaciens FZB42 undergoes extensive posttranslational modification to become a bioactive natural product.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. amyloliquefaciens fzb42]
<Options>: A: bacillus amyloliquefaciens ebl11
B: bacillus amyloliquefaciens ab01
C: bacillus amyloliquefaciens lfb112
D: bacillus amyloliquefaciens ap143
E: bacillus amyloliquefaciens subsp. amyloliquefaciens (aka bacillus amyloliquefaciens)
F: None of the above. | [E] |
<Instruct>: Given the context 'Mismatch repair modulation of MutY activity drives Bacillus subtilis stationary-phase mutagenesis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus subtilis]
<Options>: A: bacillus (aka bacillus <walking sticks>)
B: bacillus aerophilus
C: vibrio subtilis (aka bacillus subtilis)
D: bacillus aerius
E: bacillus mobilis
F: None of the above. | [C] |
<Instruct>: Given the context 'Oxidative stress-induced DNA damage has been associated with generation of adaptive His(+) and Met(+) but not Leu(+) revertants in strain Bacillus subtilis YB955 (hisC952 metB5 leuC427).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [strain bacillus subtilis yb955 (hisc952 metb5 leuc427)]
<Options>: A: bacillus tyrosalemonis (aka bacillus sp. yas1)
B: bacillus sp. y995
C: bacillus sp. 775
D: bacillus cereus strain is075 (aka bacillus cereus is075)
E: bacillus sp. 1055(2011)
F: None of the above. | [F] |
<Instruct>: Given the context 'Moreover, the increased rate of adaptive Leu(+) revertants produced by a MutSL knockout strain was significantly diminished following mutY disruption.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mutsl knockout strain]
<Options>: A: silvanus muticus
B: mutela
C: fungal endophyte mut 771
D: fungal endophyte mut 891
E: fungal endophyte mut 585
F: None of the above. | [F] |
<Instruct>: Given the context 'In conclusion, our results support the idea that MMR regulation of the mutagenic/antimutagenic properties of MutY promotes stationary-phase mutagenesis in B. subtilis cells.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. subtilis]
<Options>: A: bacillus mesentericus (aka bacillus pumilus)
B: bacillus albus
C: bacillus longisporus ('bacillus longisporus') (aka bacillus longisporus)
D: bacillus mesentericus (aka bacillus subtilis)
E: bacillus thuringiensis berliner 1915 (approved lists 1980) (aka bacillus thuringiensis)
F: None of the above. | [D] |
<Instruct>: Given the context 'Mapping interactions between germinants and Clostridium difficile spores.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [clostridium difficile]
<Options>: A: apion difficile (aka exapion difficile)
B: flavobacterium difficile
C: clostridium intestinalis (aka clostridium intestinale)
D: ditrichum difficile (trichostomum difficile) (aka ditrichum difficile)
E: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
F: None of the above. | [E] |
<Instruct>: Given the context 'Germination of Clostridium difficile spores is the first required step in establishing C. difficile-associated disease (CDAD).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [clostridium difficile; c. difficile]
<Options>: A: clostridium botulinum d
B: trichostomum difficile (aka ditrichum difficile)
C: clostridium difficile 824 (aka clostridioides difficile 824)
D: eubacterium difficile
E: peptoclostridium difficile (aka clostridioides difficile)
F: ditrichum difficile (trichostomum difficile) (aka ditrichum difficile)
G: clostridium difficile m68 (aka clostridioides difficile m68)
H: clostridium septicum (bacillus septicus) (aka clostridium septicum)
I: polytoma difficile
J: None of the above. | [E; E] |
<Instruct>: Given the context 'Germination of Clostridium difficile spores is the first required step in establishing C. difficile-associated disease (CDAD).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [clostridium difficile; c. difficile]
<Options>: A: clostridium difficile m68 (aka clostridioides difficile m68)
B: clostridium rectalis
C: clostridium difficile 824 (aka clostridioides difficile 824)
D: polytoma difficile
E: apion difficile (aka exapion difficile)
F: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
G: clostridium difficile t61 (aka clostridioides difficile t61)
H: bacillus septicus (aka clostridium septicum)
I: clostridium difficile t11 (aka clostridioides difficile t11)
J: None of the above. | [F; F] |
<Instruct>: Given the context 'Taurocholate (a bile salt) and glycine (an amino acid) have been shown to be important germinants of C. difficile spores.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
B: bacterium diphtheriae (aka corynebacterium diphtheriae)
C: clostridium difficile strain b-1 (aka clostridioides difficile b-1)
D: trichostomum difficile (aka ditrichum difficile)
E: apion difficile (aka exapion difficile)
F: None of the above. | [A] |
<Instruct>: Given the context 'In the present study, we tested a series of glycine and taurocholate analogs for the ability to induce or inhibit C. difficile spore germination.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: ditrichum difficile (trichostomum difficile) (aka ditrichum difficile)
B: bacterium diphtheriae (aka corynebacterium diphtheriae)
C: polytoma difficile
D: clostridium difficile b-1 (aka clostridioides difficile b-1)
E: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
F: None of the above. | [E] |
<Instruct>: Given the context 'The C. difficile germination machinery also recognizes other hydrophobic amino acids.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: apion difficile (aka exapion difficile)
B: flavobacterium difficile
C: bacterium diphtheriae (aka corynebacterium diphtheriae)
D: clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (aka clostridioides difficile)
E: clostridium difficile t61 (aka clostridioides difficile t61)
F: None of the above. | [D] |
<Instruct>: Given the context 'The C. difficile germination machinery also recognizes other hydrophobic amino acids.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: bacterium diphtheriae (aka corynebacterium diphtheriae)
B: flavobacterium difficile
C: apion difficile (aka exapion difficile)
D: clostridium difficile t61 (aka clostridioides difficile t61)
E: None of the above. | [E] |
<Instruct>: Given the context 'In contrast, the 6- and 7-hydroxyl groups are required for inhibition of C. difficile spore germination.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: clostridium difficile m68 (aka clostridioides difficile m68)
B: apion difficile (aka exapion difficile)
C: cosmarium difficile
D: ditrichum difficile (trichostomum difficile) (aka ditrichum difficile)
E: peptoclostridium difficile (aka clostridioides difficile)
F: None of the above. | [E] |
<Instruct>: Given the context 'Similarly, C. difficile spores are able to detect taurocholate analogs with shorter, but not longer, alkyl amino sulfonic acid side chains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: clostridium septicum (bacillus septicus) (aka clostridium septicum)
B: clostridium thermarum
C: trichostomum difficile (aka ditrichum difficile)
D: flavobacterium difficile
E: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
F: None of the above. | [E] |
<Instruct>: Given the context 'Finally, a taurocholate analog with an m-aminobenzenesulfonic acid side chain is a strong inhibitor of C. difficile spore germination.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: clostridium difficile t11 (aka clostridioides difficile t11)
B: bacillus septicus (aka clostridium septicum)
C: eubacterium difficile
D: clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (aka clostridioides difficile)
E: clostridium difficile t61 (aka clostridioides difficile t61)
F: None of the above. | [D] |
<Instruct>: Given the context 'In conclusion, C. difficile spores recognize both amino acids and taurocholate through multiple interactions that are required to bind the germinants and/or activate the germination machinery.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
B: clostridium difficile m68 (aka clostridioides difficile m68)
C: clostridium difficile strain b-1 (aka clostridioides difficile b-1)
D: apion difficile (aka exapion difficile)
E: clostridium thermarum
F: None of the above. | [A] |
<Instruct>: Given the context 'In vitro studies of peptidoglycan binding and hydrolysis by the Bacillus anthracis germination-specific lytic enzyme SleB.
The Bacillus anthracis endospore loses resistance properties during germination when its cortex peptidoglycan is degraded by germination-specific lytic enzymes (GSLEs).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus anthracis]
<Options>: A: bacillus aerophilus
B: pasteurella pestis (aka yersinia pestis)
C: anthrax bacterium (aka bacillus anthracis)
D: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
E: bacillus cytotoxicus (bacillus cytotoxis) (aka bacillus cytotoxicus)
F: None of the above. | [C] |
<Instruct>: Given the context 'As the conditions and limitations for SleB activity are further elucidated, they will enable the development of treatments that stimulate premature germination of B. anthracis spores, greatly simplifying decontamination measures.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. anthracis]
<Options>: A: bacillus bronchicanis (aka bordetella bronchiseptica)
B: bacillus cereus var. anthracis (aka bacillus anthracis)
C: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
D: bacillus pestis (aka yersinia pestis)
E: anthrax anthrax (musca anthrax) (aka anthrax anthrax)
F: None of the above. | [B] |
<Instruct>: Given the context 'Glucose-dependent activation of Bacillus anthracis toxin gene expression and virulence requires the carbon catabolite protein CcpA.
Sensing environmental conditions is an essential aspect of bacterial physiology and virulence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus anthracis]
<Options>: A: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
B: bacillus aerophilus
C: bacillus cytotoxis (aka bacillus cytotoxicus)
D: bacillus anthracis (bacillus cereus var. anthracis) (aka bacillus anthracis)
E: pestisella pestis (aka yersinia pestis)
F: None of the above. | [D] |
<Instruct>: Given the context 'In Bacillus anthracis, the causative agent of anthrax, transcription of the two major virulence factors, toxin and capsule, is triggered by bicarbonate, a major compound in the mammalian body.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus anthracis; anthrax]
<Options>: A: bacillus cytotoxicus (bacillus cytotoxis) (aka bacillus cytotoxicus)
B: bacillus cereus var. anthracis (aka bacillus anthracis)
C: anthrax anthrax (musca anthrax) (aka anthrax anthrax)
D: anthrax
E: bacillus cereus biovar anthracis
F: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
G: anthribola
H: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
I: anthrax incomptus
J: None of the above. | [B; B] |
<Instruct>: Given the context 'In Bacillus anthracis, the causative agent of anthrax, transcription of the two major virulence factors, toxin and capsule, is triggered by bicarbonate, a major compound in the mammalian body.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus anthracis; anthrax]
<Options>: A: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
B: anthrax bacterium (aka bacillus anthracis)
C: anthrax virgo
D: bacillus cereus biovar anthracis
E: anthribus
F: anthribola
G: anthrenus
H: bacillus aerophilus
I: bacillus bronchisepticus (aka bordetella bronchiseptica)
J: None of the above. | [B; B] |
<Instruct>: Given the context 'Here it is shown that glucose is an additional signaling molecule recognized by B. anthracis for toxin synthesis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. anthracis]
<Options>: A: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
B: bacillus cereus biovar anthracis
C: bacillus cytotoxicus (bacillus cytotoxis) (aka bacillus cytotoxicus)
D: bacillus necrophorus (aka fusobacterium necrophorum)
E: bacillus anthracis (bacillus cereus var. anthracis) (aka bacillus anthracis)
F: None of the above. | [E] |
<Instruct>: Given the context 'The virulence of a B. anthracis strain from which the ccpA gene was deleted was significantly attenuated in a mouse model of infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. anthracis strain; mouse]
<Options>: A: southeastern asian house mouse (aka mus musculus castaneus)
B: bacillus anthracis (strain ames) (aka bacillus anthracis str. ames)
C: bacillus cereus biovar anthracis
D: mus musculus (house mouse) (aka mus musculus)
E: mus domesticus (aka mus musculus domesticus)
F: mouse (aka mus <genus>)
G: bacteridium anthracis (aka bacillus anthracis)
H: mus famulus (servant mouse) (aka mus famulus)
I: bacillus anthracis str. sterne (bacillus anthracis (strain sterne)) (aka bacillus anthracis str. sterne)
J: anthrax
K: None of the above. | [G; D] |
<Instruct>: Given the context 'The virulence of a B. anthracis strain from which the ccpA gene was deleted was significantly attenuated in a mouse model of infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. anthracis strain; mouse]
<Options>: A: mus molossinus (aka mus musculus molossinus)
B: anthrax
C: bacteridium anthracis (aka bacillus anthracis)
D: mus famulus (servant mouse) (aka mus famulus)
E: bacillus anthracis a2012 (aka bacillus anthracis str. a2012)
F: mus domesticus (aka mus musculus domesticus)
G: bacillus anthracis a16 (aka bacillus anthracis str. a16)
H: bacillus pestis (aka yersinia pestis)
I: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
J: mus musculus (house mouse) (aka mus musculus)
K: None of the above. | [C; J] |
<Instruct>: Given the context 'The data demonstrated that glucose is an important host environment-derived signaling molecule and that CcpA is a molecular link between environmental sensing and B. anthracis pathogenesis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. anthracis]
<Options>: A: bacillus necrophorus (aka fusobacterium necrophorum)
B: bacteridium anthracis (aka bacillus anthracis)
C: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
D: anthrax anthrax (musca anthrax) (aka anthrax anthrax)
E: bacillus cytotoxis (aka bacillus cytotoxicus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Structural and functional analysis of the type III secretion system from Pseudomonas fluorescens Q8r1-96.
Pseudomonas fluorescens Q8r1-96 represents a group of rhizosphere strains responsible for the suppressiveness of agricultural soils to take-all disease of wheat.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pseudomonas fluorescens q8r1-96]
<Options>: A: pseudomonas fluorescens pcai_d6.2
B: pseudomonas fluorescens (bacillus fluorescens liquefaciens) (aka pseudomonas fluorescens)
C: pseudomonas fluorescens (biotype a) (aka pseudomonas fluorescens bv. a)
D: pseudomonas fluorescens icmp 3636
E: pseudomonas fluorescens bv. ii
F: None of the above. | [B] |
<Instruct>: Given the context 'In this study, we analyzed the genome of Q8r1-96 and identified a type III protein secretion system (T3SS) gene cluster that has overall organization similar to that of the T3SS gene cluster of the plant pathogen Pseudomonas syringae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96; pseudomonas syringae]
<Options>: A: cloning vector ra(2)_hqn
B: halobacteriales archaeon qh_1_68_42
C: pseudomonas syringae kn2.a.3
D: pseudomonas brassicae
E: phytophthora syringae (phloeophthora syringae) (aka phytophthora syringae)
F: cloning vector ia(9)_hqn_ra(1)_hqn
G: cloning vector ia1_gkr
H: pseudomonas polycolor (aka pseudomonas aeruginosa)
I: pseudomonas syringae subsp. syringae (aka pseudomonas syringae)
J: cloning vector ia(11)_hqn
K: None of the above. | [K; I] |
<Instruct>: Given the context 'In this study, we analyzed the genome of Q8r1-96 and identified a type III protein secretion system (T3SS) gene cluster that has overall organization similar to that of the T3SS gene cluster of the plant pathogen Pseudomonas syringae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96; pseudomonas syringae]
<Options>: A: cloning vector ia(11)_hqn
B: pseudomonas polycolor (aka pseudomonas aeruginosa)
C: cloning vector ia(9)_hqn_ra(1)_hqn
D: pseudomonas syringae kn2.a.3
E: cloning vector ia1_gkr
F: phytophthora syringae (phloeophthora syringae) (aka phytophthora syringae)
G: halobacteriales archaeon qh_1_68_42
H: cloning vector ra(2)_hqn
I: pseudomonas brassicae
J: None of the above. | [J; J] |
<Instruct>: Given the context 'In this study, we analyzed the genome of Q8r1-96 and identified a type III protein secretion system (T3SS) gene cluster that has overall organization similar to that of the T3SS gene cluster of the plant pathogen Pseudomonas syringae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96; pseudomonas syringae]
<Options>: A: cloning vector ra(1)_hqn
B: pseudomonas syringae icmp 19498
C: pseudomonas syringae tomato (aka pseudomonas syringae pv. tomato)
D: pseudomonas brassicacearum
E: pseudomonas syringae subsp. syringae (aka pseudomonas syringae)
F: pseudomonas paralactis
G: cloning vector ia1_ksl
H: cloning vector ia(9)_hqn_ra(1)_hqn
I: cloning vector ia(10)_yqr
J: cloning vector ia1_htk
K: None of the above. | [K; E] |
<Instruct>: Given the context 'We also screened a collection of 30 closely related P. fluorescens strains and detected the T3SS genes in all but one of them.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. fluorescens strains]
<Options>: A: pseudomonas protegens
B: bacillus fluorescens liquefaciens (aka pseudomonas fluorescens)
C: pseudomonas [fluorescens] atcc 17400
D: pasteurellales bacterium
E: 'pseudomonas reactans' (aka pseudomonas reactans)
F: None of the above. | [B] |
<Instruct>: Given the context 'The Q8r1-96 genome contained ropAA and ropM type III effector genes, which are orthologs of the P. syringae effector genes hopAA1-1 and hopM1, as well as a novel type III effector gene designated ropB. These type III effector genes encoded proteins that were secreted in culture and injected into plant cells by both P. syringae and Q8r1-96 T3SSs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96; p. syringae]
<Options>: A: qwaqwaiini
B: pseudomonas syringae subsp. syringae (aka pseudomonas syringae)
C: pseudomonas syringae icmp 11293
D: cloning vector ia(11)_hqn
E: pseudomonas syringae kn2.a.3
F: pseudomonas syringae icmp 19498
G: cloning vector ia(5)_hqn_ra(1)_hqn
H: halobacteriales archaeon qh_8_68_33
I: cloning vector ia(10)_yqr
J: bacillus pyocyaneus (aka pseudomonas aeruginosa)
K: None of the above. | [K; B] |
<Instruct>: Given the context 'The Q8r1-96 genome contained ropAA and ropM type III effector genes, which are orthologs of the P. syringae effector genes hopAA1-1 and hopM1, as well as a novel type III effector gene designated ropB. These type III effector genes encoded proteins that were secreted in culture and injected into plant cells by both P. syringae and Q8r1-96 T3SSs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96; p. syringae]
<Options>: A: pseudomonas syringae (pseudomonas syringae subsp. syringae) (aka pseudomonas syringae)
B: cloning vector ra(2)_hqn
C: cloning vector ia(10)_hqn
D: cloning vector ia5_yqr_dimer
E: pseudomonas syringae icmp 19499
F: cloning vector ia(11)_hqn
G: pseudomonas proteolytica
H: cloning vector ia(5)_hqn_fa(2)_ksl
I: phloeophthora syringae (aka phytophthora syringae)
J: pseudomonas paralactis
K: None of the above. | [K; A] |
<Instruct>: Given the context 'The Q8r1-96 T3SS was expressed in the rhizosphere, but mutants lacking a functional T3SS were not altered in their rhizosphere competence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96]
<Options>: A: cloning vector ra(1)_hqn
B: halobacteriales archaeon qh_1_68_42
C: cloning vector ia5_yqr_dimer
D: cloning vector ia(11)_hqn
E: cloning vector ia1_yqr_dimer
F: None of the above. | [F] |
<Instruct>: Given the context 'The Q8r1-96 type III effectors RopAA, RopB, and RopM were capable of suppressing the hypersensitive response and production of reactive oxygen species, two plant immune responses.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96]
<Options>: A: cloning vector ia1_nar
B: cloning vector ia1_yqr_dimer
C: cloning vector ia(11)_hqn
D: cloning vector ia1_ksl
E: cloning vector ia5_yqr_dimer
F: None of the above. | [F] |
<Instruct>: Given the context 'A cis-encoded antisense small RNA regulated by the HP0165-HP0166 two-component system controls expression of ureB in Helicobacter pylori.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [helicobacter pylori]
<Options>: A: helicobacter muridarum
B: helicobacter canis
C: 'helicobacter muricola' (aka helicobacter muricola)
D: helicobacter sanguini (aka helicobacter saguini)
E: helicobacter nemestrinae (aka helicobacter pylori)
F: None of the above. | [E] |
<Instruct>: Given the context 'A cis-encoded antisense small RNA regulated by the HP0165-HP0166 two-component system controls expression of ureB in Helicobacter pylori.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [helicobacter pylori]
<Options>: A: helicobacter canis
B: 'helicobacter muricola' (aka helicobacter muricola)
C: helicobacter sanguini (aka helicobacter saguini)
D: helicobacter muridarum
E: None of the above. | [E] |
<Instruct>: Given the context 'Expression of urease is essential for gastric colonization by Helicobacter pylori.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [helicobacter pylori]
<Options>: A: helicobacter felis
B: helicobacter japonicum (aka helicobacter japonicus)
C: helicobacter bilis
D: helicobacter nemestrinae (aka helicobacter pylori)
E: helicobacter hepaticus
F: None of the above. | [D] |
<Instruct>: Given the context 'C-terminal domain residues important for secretion and attachment of RgpB in Porphyromonas gingivalis.
Porphyromonas gingivalis, a periodontal pathogen, expresses a group of surface proteins with a common C-terminal domain (CTD) that are exported by a novel secretion system to the surface, where they are covalently attached.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [porphyromonas gingivalis]
<Options>: A: porphyromonas gingivalis sjd11
B: bacteroides gingivalis (aka porphyromonas gingivalis)
C: porphyromonas gingivalis sjd12
D: porphyromonas vaginalis
E: porphyromonas gingivalis 381
F: None of the above. | [B] |
<Instruct>: Given the context 'The mutant RgpB proteins were expressed in a P. gingivalis host lacking functional RgpB and RgpA Arg-specific proteases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. gingivalis]
<Options>: A: porphyromonas gingivalis (bacteroides gingivalis) (aka porphyromonas gingivalis)
B: porphyromonas gingivalis f0569
C: porphyromonas gingivalis ajw4
D: entamoeba gingivalis
E: porphyromonas gingivalis sjd5
F: None of the above. | [A] |
<Instruct>: Given the context 'Effects of deficiency and overdose of group 2 sigma factors in triple inactivation strains of Synechocystis sp. strain PCC 6803.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [synechocystis sp. strain pcc 6803]
<Options>: A: synechocystis sp. (atcc 27170) (aka synechocystis sp. pcc 6701)
B: synechocystis sp.
C: synechocystis sp. pcc 7338
D: synechocystis sp. pcc 7339
E: synechocystis sp. (atcc 27184) (aka synechocystis sp. pcc 6803)
F: None of the above. | [E] |
<Instruct>: Given the context 'The cyanobacterium Synechocystis sp. strain PCC 6803 encodes nine sigma factors, all belonging to the sigma(70) family.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [synechocystis sp. strain pcc 6803]
<Options>: A: synechocystis sp. atcc 27171 (aka synechocystis sp. pcc 6702)
B: synechocystis sp. (atcc 27170) (aka synechocystis sp. pcc 6701)
C: synechocystis sp. s-1
D: synechocystis sp.
E: synechocystis sp. (atcc 27184) (aka synechocystis sp. pcc 6803)
F: None of the above. | [E] |
<Instruct>: Given the context 'We found that, similar to kinetoplastid aldolases, the fructose 1,6-bisphosphate aldolase of Diplonema papillatum possesses a type 2-peroxisomal targeting signal.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [diplonema papillatum]
<Options>: A: mortoniella papillata
B: gymnomitrion papillosum
C: aplosporella papillata
D: diplonema papillatum
E: disphyma papillatum
F: None of the above. | [F] |
<Instruct>: Given the context 'In contrast, orotidine-5'-monophosphate decarboxylase, a non-glycolytic glycosomal enzyme in kinetoplastids, was shown to be a cytosolic enzyme in D. papillatum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [d. papillatum]
<Options>: A: polytrichastrum papillatum
B: disphyma papillatum
C: dysoxylum papillosum
D: phragmidium papillatum
E: diplonema papillatum
F: None of the above. | [F] |
<Instruct>: Given the context 'P. penardii and P. niei sampled from various geographical localities were examined by means of light and scanning electron microscopy.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. penardii; p. niei]
<Options>: A: prochristianella penaei
B: plasmodium tropiduri
C: aphelenchus penardi (aka laimaphelenchus penardi)
D: unruhdinium niei (peridiniopsis niei) (aka unruhdinium niei)
E: perna indica
F: unruhdinium penardii (peridiniopsis penardii) (aka unruhdinium penardii)
G: pasteuria nishizawae
H: plasmopara pimpinellae
I: periconia penniseti
J: porodaedalea niemelaei
K: None of the above. | [F; D] |
<Instruct>: Given the context 'P. penardii and P. niei sampled from various geographical localities were examined by means of light and scanning electron microscopy.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. penardii; p. niei]
<Options>: A: proepeorus nipponicus (epeorus nipponicus) (aka proepeorus nipponicus)
B: periconia penniseti
C: cercospora penzigii
D: nippolachnus piri
E: parasericostoma peniai
F: phanaeus nimrod
G: primnoisis niwa
H: peridiniopsis penardii (aka unruhdinium penardii)
I: plasmopara crustosa (aka plasmopara nivea)
J: peridiniopsis niei (aka unruhdinium niei)
K: None of the above. | [H; J] |
<Instruct>: Given the context 'Molecular phylogenetic analyses based on SSU, LSU and ITS indicated P. niei, P. penardii and P. penardii var.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. niei]
<Options>: A: buchnera aphidicola (nippolachnus piri)
B: babesia peircei
C: pasteuria nishizawae
D: unruhdinium niei (peridiniopsis niei) (aka unruhdinium niei)
E: perna indica
F: None of the above. | [D] |
<Instruct>: Given the context 'The new variety possessed an endosymbiotic diatom which was similar to P. penardii and P. kevei, whereas the endosymbiont was not present in cells of P. niei.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. niei]
<Options>: A: peridiniopsis niei (aka unruhdinium niei)
B: peromyia niederhofensis
C: phaenomenella nicoi
D: pasteuria nishizawae
E: porodaedalea niemelaei
F: None of the above. | [A] |
<Instruct>: Given the context 'Effects of temperature on the development and population growth of the sycamore lace bug, Corythucha ciliata.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sycamore lace bug; corythucha ciliata]
<Options>: A: lophozia ciliata
B: red-backed stink bug (aka banasa dimiata)
C: cryptocoryne ciliata
D: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
E: spotted stalk borer (aka chilo sacchariphagus)
F: solitalea lacus
G: tea seed bug (aka poecilocoris latus)
H: crassula ciliata
I: sycamore lace bug (aka corythucha ciliata)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'Effects of temperature on the development and population growth of the sycamore lace bug, Corythucha ciliata.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sycamore lace bug; corythucha ciliata]
<Options>: A: cicadula ciliata
B: loeselia ciliata
C: crassula ciliata
D: coleophora lacera (apista lacera) (aka coleophora lacera)
E: sycamore lace bug (aka corythucha ciliata)
F: solitalea lacus
G: aphidius sonchi
H: shiny bluebottle fly (aka cynomya cadaverina)
I: cryptandra ciliata
J: None of the above. | [E; E] |
<Instruct>: Given the context 'The sycamore lace bug, Corythucha ciliata (Say) (Hemiptera: Tingidae), is an important invasive exotic pest of Platanus (Proteales: Platanaceae) trees in China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sycamore lace bug; corythucha ciliata]
<Options>: A: loeselia ciliata
B: sycamore lace bug (aka corythucha ciliata)
C: cicadula ciliata
D: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
E: cryptocoryne ciliata
F: solitalea lacus
G: sycamore seed bug (aka belonochilus numenius)
H: apista lacera (aka coleophora lacera)
I: cybaeus monticola
J: None of the above. | [B; B] |
<Instruct>: Given the context 'The sycamore lace bug, Corythucha ciliata (Say) (Hemiptera: Tingidae), is an important invasive exotic pest of Platanus (Proteales: Platanaceae) trees in China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sycamore lace bug; corythucha ciliata]
<Options>: A: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
B: shinella lacus
C: apista lacera (aka coleophora lacera)
D: bulbothrix lacinia
E: loeselia ciliata
F: sycamore lace bug (aka corythucha ciliata)
G: western sycamore (aka platanus racemosa)
H: xylocopa ciliata
I: aciculites ciliata
J: None of the above. | [F; F] |
<Instruct>: Given the context 'The objective of this study was to determine the effects of temperature on C. ciliata in the laboratory so that forecasting models based on heat accumulation units could be developed for the pest.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. ciliata]
<Options>: A: cryptandra ciliata
B: callosa ciliata
C: corythuca ciliata (aka corythucha ciliata)
D: cladonia ciliata
E: cryptocoryne ciliata
F: None of the above. | [C] |
<Instruct>: Given the context 'Development and fecundity of C. ciliata reared on leaves of London plane tree (Platanus x acerifolia) were investigated at seven constant temperatures (16, 19, 22, 26, 30, 33, and 36^0 C) and at a relative humidity of 80% with a photoperiod of 14:10 (L:D).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. ciliata; london plane tree; platanus x acerifolia]
<Options>: A: ranunculus platanifolius
B: cyrtandra ciliata
C: roldana platanifolia
D: london plane tree (aka platanus x hispanica)
E: phylica vulgaris
F: phyle cartago
G: phacus platyaulax
H: campanula ciliata
I: caulibugula ciliata
J: corythuca ciliata (aka corythucha ciliata)
K: poa hybrida
L: phyllanthus simplex (aka cathetus simplex)
M: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
N: platanus (plane trees) (aka platanus)
O: None of the above. | [J; D; D] |
<Instruct>: Given the context 'Development and fecundity of C. ciliata reared on leaves of London plane tree (Platanus x acerifolia) were investigated at seven constant temperatures (16, 19, 22, 26, 30, 33, and 36^0 C) and at a relative humidity of 80% with a photoperiod of 14:10 (L:D).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. ciliata; london plane tree; platanus x acerifolia]
<Options>: A: chrysocoma ciliata
B: cryptandra ciliata
C: corythuca ciliata (aka corythucha ciliata)
D: lucanus planeti
E: phyllanthus taitensis
F: phyllanthus spruceanus
G: roldana platanifolia
H: london plane tree (aka platanus x hispanica)
I: phacus platalea
J: phacus platyaulax
K: platiana
L: chaetanthera ciliata
M: phylica arborea
N: chaetosphaeria ciliata
O: None of the above. | [C; H; H] |
<Instruct>: Given the context 'Development and fecundity of C. ciliata reared on leaves of London plane tree (Platanus x acerifolia) were investigated at seven constant temperatures (16, 19, 22, 26, 30, 33, and 36^0 C) and at a relative humidity of 80% with a photoperiod of 14:10 (L:D).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. ciliata; london plane tree; platanus x acerifolia]
<Options>: A: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
B: phyllanthus comosus
C: phyllanthus multiflorus (aka kirganelia reticulata)
D: commiphora ciliata
E: cicadula ciliata
F: london plane tree (aka platanus x hispanica)
G: callosa ciliata
H: ranunculus platanifolius
I: phyllanthus taitensis
J: roldana platanifolia
K: phyllobates sylvatica (aka hyloxalus sylvaticus)
L: corythucha ciliata (corythuca ciliata) (aka corythucha ciliata)
M: cavanillesia platanifolia
N: platanus occidentalis (eastern plane-tree) (aka platanus occidentalis)
O: None of the above. | [L; F; F] |
<Instruct>: Given the context 'The developmental time from egg hatching to adult emergence was respectively 47.6, 35.0, 24.1, 20.0, and 17.1 days at the temperatures of 19, 22, 26, 30, and 33^0 C. C. ciliata could not complete full development at 16^0 and 36^0 C.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. ciliata]
<Options>: A: cryptandra ciliata
B: campanula ciliata
C: chrysocoma ciliata
D: corythucha ciliata (corythuca ciliata) (aka corythucha ciliata)
E: cyrtandra ciliata
F: None of the above. | [D] |
<Instruct>: Given the context 'The population trend index (I) of C. ciliata was the highest (130.1) at 30^0 C and the lowest (24.9) at 19^0 C. Therefore, the optimal developmental temperature for C. ciliata was determined to be 30^0 C.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. ciliata]
<Options>: A: cryptocoryne ciliata
B: cryptandra ciliata
C: corythucha ciliata (corythuca ciliata) (aka corythucha ciliata)
D: crassula ciliata
E: commiphora ciliata
F: None of the above. | [C] |
<Instruct>: Given the context 'Plant infestation, stem borer density, parasitism, and parasitoid abundance were assessed during two years in two host plants, Zea mays (L.) (Cyperales: Poaceae) and Sorghum bicolor (L.) (Cyperales: Poaceae), in cultivated habitats.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [zea mays (l.); sorghum bicolor (l.)]
<Options>: A: zethus mexicanus (apis mexicana) (aka zethus mexicanus)
B: zelurus petax
C: zelus grassans
D: solanum bicolor
E: maize (aka zea mays)
F: zea mexicana (aka zea mays subsp. mexicana)
G: sorghum arundinaceum (sorghum verticilliflorum (steud.) stapf) (aka sorghum arundinaceum)
H: sorghum vulgare (aka sorghum bicolor)
I: cynanthus bicolor (aka riccordia bicolor)
J: sorghum grande
K: None of the above. | [E; H] |
<Instruct>: Given the context 'Plant infestation, stem borer density, parasitism, and parasitoid abundance were assessed during two years in two host plants, Zea mays (L.) (Cyperales: Poaceae) and Sorghum bicolor (L.) (Cyperales: Poaceae), in cultivated habitats.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [zea mays (l.); sorghum bicolor (l.)]
<Options>: A: cynanthus bicolor (aka riccordia bicolor)
B: sorghum miliaceum (aka sorghum halepense)
C: zethus
D: zethus mexicanus (apis mexicana) (aka zethus mexicanus)
E: zelus tetracanthus
F: zea mays var. japonica (aka zea mays)
G: zelurus petax
H: sorghum grande
I: sorghum angustum
J: sorghum bicolor (sorghum bicolor subsp. bicolor) (aka sorghum bicolor)
K: None of the above. | [F; J] |
<Instruct>: Given the context 'Across habitats, plant infestation (23.2%), stem borer density (2.2 per plant), and larval parasitism (15.0%) were highest in maize in cultivated habitats.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [maize]
<Options>: A: heliothis zea (aka helicoverpa zea)
B: agrococcus citreus
C: zea saccharata (aka zea mays subsp. mays)
D: corn ear worm (aka helicoverpa armigera)
E: zea mays (zea mays var. japonica) (aka zea mays)
F: None of the above. | [E] |
<Instruct>: Given the context 'Cotesia sesamiae (Cameron) and C. flavipes Cameron (Hymenoptera: Braconidae) were the key parasitoids in cultivated habitats (both species accounted for 76.4% of parasitized stem borers in cereal crops), but not in natural habitats (the two Cotesia species accounted for 14.5% of parasitized stem borers in wild host plants).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cotesia sesamiae (cameron); c. flavipes cameron]
<Options>: A: clavaria flavipes
B: paragetocera flavipes
C: neorileya flavipes
D: apanteles sesamiae (aka cotesia sesamiae)
E: sesamia soyema
F: coryne sessilis (aka zanclea sessilis)
G: cyperus seslerioides
H: chiococca filipes
I: etlingera sessilanthera
J: cotesia flavipes
K: None of the above. | [D; J] |
<Instruct>: Given the context 'Cotesia sesamiae (Cameron) and C. flavipes Cameron (Hymenoptera: Braconidae) were the key parasitoids in cultivated habitats (both species accounted for 76.4% of parasitized stem borers in cereal crops), but not in natural habitats (the two Cotesia species accounted for 14.5% of parasitized stem borers in wild host plants).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cotesia sesamiae (cameron); c. flavipes cameron]
<Options>: A: clavaria flavipes
B: coryne sessilis (aka zanclea sessilis)
C: etlingera sessilanthera
D: cyperus seslerioides
E: paragetocera flavipes
F: sesamia soyema
G: neorileya flavipes
H: apanteles sesamiae (aka cotesia sesamiae)
I: chiococca filipes
J: None of the above. | [H; J] |
<Instruct>: Given the context 'Cotesia sesamiae (Cameron) and C. flavipes Cameron (Hymenoptera: Braconidae) were the key parasitoids in cultivated habitats (both species accounted for 76.4% of parasitized stem borers in cereal crops), but not in natural habitats (the two Cotesia species accounted for 14.5% of parasitized stem borers in wild host plants).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cotesia sesamiae (cameron); c. flavipes cameron]
<Options>: A: cotesia sesamiae bracovirus
B: chiococca filipes
C: apanteles sesamiae (aka cotesia sesamiae)
D: cercospora sesami
E: helophorus flavipes
F: cotesia flavipes
G: sesamia soyema
H: neorileya flavipes
I: descampsina sesamiae
J: chionea crassipes
K: None of the above. | [C; F] |
<Instruct>: Given the context 'Factors of susceptibility of human myiasis caused by the New World screw-worm, Cochliomyia hominivorax in Sao Gonsigmaalo, Rio de Janeiro, Brazil.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; new world screw-worm; cochliomyia hominivorax]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: rock worm (aka arenicola marina)
C: cephalonomia gallicola
D: red-striped needleworm (aka epinotia radicana)
E: old world screwworm (aka chrysomya bezziana)
F: cochliobolus heterostrophus (aka bipolaris maydis)
G: cardium humanum (aka glossus humanus)
H: hominidae (great apes) (aka hominidae)
I: hominiventricola filiformis
J: primary screw-worm (aka cochliomyia hominivorax)
K: herring worm (aka anisakis simplex)
L: carcharhinus humani
M: corydoras gossei (aka hoplisoma gossei)
N: sphaeria humana (aka sordaria humana)
O: None of the above. | [A; J; J] |
<Instruct>: Given the context 'Factors of susceptibility of human myiasis caused by the New World screw-worm, Cochliomyia hominivorax in Sao Gonsigmaalo, Rio de Janeiro, Brazil.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; new world screw-worm; cochliomyia hominivorax]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: pediculus humanus corporis (pediculus humanus humanus) (aka pediculus humanus corporis)
C: primary screw-worm (aka cochliomyia hominivorax)
D: hominidae (great apes) (aka hominidae)
E: corydoras gossei (aka hoplisoma gossei)
F: asian blue worm (aka perionyx excavatus)
G: phorbia genitalis (hylemya genitalis) (aka phorbia genitalis)
H: macrobiotus sapiens
I: rock worm (aka arenicola marina)
J: sporothrix nebularis (ophiostoma nebulare) (aka sporothrix nebularis)
K: chrysomyxa pyrolae (aka rossmanomyces pyrolae)
L: carcharhinus humani
M: hermaeophaga cicatrix (haltica cicatrix) (aka hermaeophaga cicatrix)
N: old world screwworm (aka chrysomya bezziana)
O: None of the above. | [A; C; C] |
<Instruct>: Given the context 'Factors of susceptibility of human myiasis caused by the New World screw-worm, Cochliomyia hominivorax in Sao Gonsigmaalo, Rio de Janeiro, Brazil.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; new world screw-worm; cochliomyia hominivorax]
<Options>: A: slow worm (aka anguis fragilis)
B: southern armyworm (aka spodoptera eridania)
C: hermaeophaga cicatrix (haltica cicatrix) (aka hermaeophaga cicatrix)
D: homo sapiens (human) (aka homo sapiens)
E: pediculus humanus (human louse) (aka pediculus humanus)
F: rock worm (aka arenicola marina)
G: pediculus humanus humanus (aka pediculus humanus corporis)
H: sphaeria humana (aka sordaria humana)
I: hymenobacter terricola
J: fayodia grisella (aka clitocybula grisella)
K: phorbia genitalis (hylemya genitalis) (aka phorbia genitalis)
L: gymnopleurus humanus
M: primary screw-worm (aka cochliomyia hominivorax)
N: pig roundworm (aka ascaris suum)
O: None of the above. | [D; M; M] |
<Instruct>: Given the context 'This study was carried out between July 2007 and June 2008 and reports on the occurrence of human myiasis caused by the New World screwworm, Cochliomyia hominivorax (Coquerel) (Diptera: Calliphoridae) in Sao Gonsigmaalo in the state of Rio de Janeiro, Brazil.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; cochliomyia hominivorax]
<Options>: A: hominidae (great apes) (aka hominidae)
B: human (aka homo sapiens)
C: macrobiotus sapiens
D: primary screw-worm (aka cochliomyia hominivorax)
E: neanderthal man (aka homo sapiens neanderthalensis)
F: hargeria rapax (leptochelia rapax) (aka hargeria rapax)
G: carcharhinus humani
H: hermaeophaga cicatrix (haltica cicatrix) (aka hermaeophaga cicatrix)
I: heteromallus cavicola
J: lindgomyces carolinensis
K: None of the above. | [B; D] |
<Instruct>: Given the context 'This study was carried out between July 2007 and June 2008 and reports on the occurrence of human myiasis caused by the New World screwworm, Cochliomyia hominivorax (Coquerel) (Diptera: Calliphoridae) in Sao Gonsigmaalo in the state of Rio de Janeiro, Brazil.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; cochliomyia hominivorax]
<Options>: A: lindgomyces carolinensis
B: cochliomyia hominivorax (primary screw-worm) (aka cochliomyia hominivorax)
C: human (aka homo sapiens)
D: gymnopleurus humanus
E: great apes (aka hominidae)
F: cochliobolus heterostrophus (aka bipolaris maydis)
G: homo (humans) (aka homo)
H: corydoras gossei (aka hoplisoma gossei)
I: hylemya genitalis (aka phorbia genitalis)
J: glossus humanus (cardium humanum) (aka glossus humanus)
K: None of the above. | [C; B] |
<Instruct>: Given the context 'C. hominivorax were identified in all 22 cases of myiasis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. hominivorax]
<Options>: A: campylobacter ovis (aka campylobacter vicugnae)
B: cyphocharax
C: xenorhabdus hominickii
D: cochliomyia hominivorax (primary screw-worm) (aka cochliomyia hominivorax)
E: romanomermis culicivorax
F: None of the above. | [D] |
<Instruct>: Given the context 'This study investigated the suitability of a two step real-time RT-PCR melting curve analysis as a tool for the detection and discrimination of nine species in the plant virus family Luteoviridae, being Soybean dwarf virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [soybean dwarf virus]
<Options>: A: soybean dwarf virus
B: maize streak dwarfing virus
C: soybean vein necrosis-associated virus
D: soybean geminivirus a
E: barley dwarf virus
F: None of the above. | [A] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sbdv; bean leafroll virus; blrv; beet chlorosis virus]
<Options>: A: soybean chlorotic blotch virus
B: bean leaf roll virus (aka bean leafroll virus)
C: bovine syncytial virus (aka bovine foamy virus)
D: beet soil-borne virus (bsbv (aka beet soil-borne virus))
E: bean leaf crumple virus (bean hoja arrugada virus) (aka bean leaf crumple virus)
F: bovine rhinitis b virus 1
G: bovine respiratory syncytial virus
H: french bean leaf curl virus
I: beet chlorosis virus
J: bean yellow dwarf virus
K: bovine papular stomatitis virus
L: disbo virus
M: sindbis virus
N: spondweni virus
O: bussuquara virus
P: beet curly top virus (bctv (aka beet curly top virus))
Q: infectious bovine rhinotracheitis virus (aka bovine alphaherpesvirus 1)
R: bacopa chlorosis virus
S: potato leaf-roll virus (aka potato leafroll virus)
T: None of the above. | [T; B; B; I] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sbdv; bean leafroll virus; blrv; beet chlorosis virus]
<Options>: A: beet chlorosis virus
B: cotton leafroll bushy virus
C: bovine respiratory syncytial virus
D: bean yellow disorder virus
E: beetrevirus
F: bean chlorosis virus
G: spondweni virus
H: bltrv-1 (aka betaricinrhavirus scapularis)
I: cotton leaf roll virus (aka cotton leafroll virus)
J: beet western yellows virus (bwyv (aka beet western yellows virus))
K: bruthen virus
L: bean leafroll virus (blrv (aka bean leafroll virus))
M: blv (aka bovine leukemia virus) (aka bovine leukemia virus)
N: sugar beet yellows virus (aka beet yellows virus)
O: beet curly top virus (bctv (aka beet curly top virus))
P: infectious bovine rhinotracheitis virus (aka bovine alphaherpesvirus 1)
Q: bussuquara virus
R: short beak and dwarfism syndrome virus
S: sac brood virus (aka sacbrood virus)
T: None of the above. | [T; L; L; A] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sbdv; bean leafroll virus; blrv; beet chlorosis virus]
<Options>: A: brassica yellows virus
B: potyvirus lupinus
C: rbsdv (aka rice black streaked dwarf virus)
D: cotton leafroll bushy virus
E: bean chlorosis virus
F: infectious bovine rhinotracheitis virus (aka bovine alphaherpesvirus 1)
G: grapevine leafroll associated virus (aka grapevine leafroll-associated virus)
H: beet chlorosis virus
I: bovine respiratory syncytial virus brsv (aka bovine orthopneumovirus)
J: bacopa chlorosis virus
K: bluvavirus
L: bovine respiratory syncytial virus
M: swine vesicular disease virus
N: broad bean stain virus (bbsv (aka broad bean stain virus))
O: beet yellow stunt virus
P: bean leaf roll virus (aka bean leafroll virus)
Q: bovine papular stomatitis virus
R: sindbis virus
S: bsbv (aka beet soil-borne virus) (aka beet soil-borne virus)
T: None of the above. | [T; P; P; H] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sbdv; bean leafroll virus; blrv; beet chlorosis virus]
<Options>: A: bellflower vein chlorosis virus
B: bean chlorosis virus
C: bovine rhinitis b virus 1
D: bean leaf crumple virus (bean hoja arrugada virus) (aka bean leaf crumple virus)
E: sleeping disease virus
F: swine vesicular disease virus
G: bovine syncytial virus (aka bovine foamy virus)
H: bovine respiratory syncytial virus
I: beet chlorosis virus
J: broad bean stain virus (bbsv (aka broad bean stain virus))
K: cotton leafroll bushy virus
L: potato leafroll virus (plrv (aka potato leafroll virus))
M: bean yellow dwarf virus
N: bean leafroll virus (blrv (aka bean leafroll virus))
O: brassica yellows virus
P: south bay virus
Q: blunervirus vaccinii
R: None of the above. | [R; N; N; I] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bchv; beet mild yellowing virus]
<Options>: A: beet western yellows virus (bwyv (aka beet western yellows virus))
B: brunton virus
C: bmyv (aka beet mild yellowing virus) (aka beet mild yellowing virus)
D: butlers creek virus
E: becv (aka bovine coronavirus) (aka bovine coronavirus)
F: bovine herpesvirus bhv-1 (aka bovine alphaherpesvirus 1)
G: maize yellow mosaic virus
H: butterbur mosaic virus (butmv) (aka butterbur mosaic virus)
I: bovine hepacivirus
J: beet yellow stunt virus
K: None of the above. | [K; C] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bchv; beet mild yellowing virus]
<Options>: A: bhv-4 (aka bovine gammaherpesvirus 4)
B: bovine hepacivirus
C: bmyv (aka beet mild yellowing virus) (aka beet mild yellowing virus)
D: bubo bubo herpesvirus
E: beet mosaic virus
F: maize yellow mosaic virus
G: bovine herpesvirus-1 (aka bovine alphaherpesvirus 1)
H: beet eastern yellows virus
I: bovine enteritic coronavirus (aka bovine coronavirus)
J: broad bean mottle virus
K: None of the above. | [K; C] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bmyv; beet western yellows virus; bwyv; cereal yellow dwarf virus-rpv]
<Options>: A: beet chlorosis virus
B: bro virus
C: beet pseudo-yellows virus (aka beet pseudoyellows virus)
D: mburo virus
E: moriarty virus
F: wheat yellow dwarf virus-gpv (wheat yellow dwarf virus-rpv) (aka wheat yellow dwarf virus-gpv)
G: rice stripe necrosis virus
H: bwamba virus (aka orthobunyavirus bwambaense)
I: benyvirus
J: sbyv (aka beet yellows virus) (aka beet yellows virus)
K: bombyx mori latent virus
L: beet western yellows virus (bwyv (aka beet western yellows virus))
M: barley yellow dwarf virus-rpv (aka cereal yellow dwarf virus rpv)
N: beejeyvirus
O: beet mild yellowing virus (bmyv (aka beet mild yellowing virus))
P: barley yellow dwarf virus-rmv
Q: beet yellow stunt virus
R: potato yellow dwarf virus (potato yellow dwarf nucleorhabdovirus) (aka potato yellow dwarf virus)
S: None of the above. | [O; L; L; M] |
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