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<Instruct>: Given the context 'Transgenic expression of the RNA-dependent RNA polymerase 3D(pol) inhibited infection of Theiler's murine encephalitis virus (TMEV), a picornavirus from which it was derived.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [theiler's murine encephalitis virus; tmev]
<Options>: A: tick-borne encephalitis virus tbev (aka tick-borne encephalitis virus)
B: murine poliovirus (aka theiler's encephalomyelitis virus)
C: tmev (aka theiler's encephalomyelitis virus) (aka theiler's encephalomyelitis virus)
D: turkey meningoencephalitis virus
E: telmo virus
F: cardiovirus b1 (theiler's murine encephalomyocarditis virus) (aka cardiovirus b1)
G: tmuv (aka tembusu virus) (aka tembusu virus)
H: theiler's encephalomyelitis virus (strain da) (theiler's murine encephalomyelitis virus (strain da)) (aka theiler's encephalomyelitis virus (strain da))
I: venezuelan equine encephalitis virus (veev (aka venezuelan equine encephalitis virus))
J: None of the above. | [J; J] |
<Instruct>: Given the context 'Here, we infected 3D(pol) transgenic mice with another picornavirus, as well as an alphaherpesvirus and a rhabdovirus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: house mouse (aka mus musculus)
B: mus terricolor (earth-colored mouse) (aka mus terricolor)
C: southeastern asian house mouse (aka mus musculus castaneus)
D: mus domesticus (aka mus musculus domesticus)
E: mus californicus (aka peromyscus californicus)
F: None of the above. | [A] |
<Instruct>: Given the context '3D(pol) transgenic FVB mice had significantly lower viral loads and survived longer after infection with all three types of viruses than nontransgenic FVB mice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: western wild mouse (aka mus spretus)
B: western european house mouse (aka mus musculus domesticus)
C: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
D: mouse (aka mus musculus)
E: mouse (aka mus <genus>)
F: None of the above. | [D] |
<Instruct>: Given the context 'Viral inhibition among three different types of virus by transgenic 3D(pol) suggests that the mechanism of action is not the direct interference with picornaviral 3D(pol) but instead may be the changing of host cells to an antiviral state before or after viral infection occurs, as basal interferon levels were higher in 3D(pol) transgenic mice before infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus californicus (aka peromyscus californicus)
B: house mouse (aka mus musculus)
C: mus macedonicus (macedonian mouse) (aka mus macedonicus)
D: mus <genus> (mice (aka mus <genus>))
E: western european house mouse (aka mus musculus domesticus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Viral inhibition among three different types of virus by transgenic 3D(pol) suggests that the mechanism of action is not the direct interference with picornaviral 3D(pol) but instead may be the changing of host cells to an antiviral state before or after viral infection occurs, as basal interferon levels were higher in 3D(pol) transgenic mice before infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus californicus (aka peromyscus californicus)
B: western european house mouse (aka mus musculus domesticus)
C: mus macedonicus (macedonian mouse) (aka mus macedonicus)
D: mus <genus> (mice (aka mus <genus>))
E: None of the above. | [E] |
<Instruct>: Given the context 'RNA aptamers directed to human immunodeficiency virus type 1 Gag polyprotein bind to the matrix and nucleocapsid domains and inhibit virus production.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human immunodeficiency virus type 1]
<Options>: A: human immunodeficiency virus type 1 (new york-5 isolate)
B: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
C: human immunodeficiency virus type-1 hiv-1 (aka human immunodeficiency virus 1)
D: None of the above. | [C] |
<Instruct>: Given the context 'Gag orchestrates the assembly and release of human immunodeficiency virus type 1 (HIV-1) particles.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human immunodeficiency virus type 1; hiv-1]
<Options>: A: human immunodeficiency virus type 1 (new york-5 isolate)
B: human immunodeficiency virus type 1 (kb-1 isolate)
C: human immunodeficiency virus type 1 (aka human immunodeficiency virus 1)
D: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
E: None of the above. | [C; C] |
<Instruct>: Given the context 'Gag orchestrates the assembly and release of human immunodeficiency virus type 1 (HIV-1) particles.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human immunodeficiency virus type 1; hiv-1]
<Options>: A: aids virus (aka human immunodeficiency virus)
B: lav-1 (aka human immunodeficiency virus 1)
C: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
D: human immunodeficiency virus type 1 (new york-5 isolate)
E: human immunodeficiency virus type 1 (kb-1 isolate)
F: None of the above. | [B; B] |
<Instruct>: Given the context 'We explored here the potential of anti-Gag RNA aptamers to inhibit HIV-1 replication.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: aids virus (aka human immunodeficiency virus)
B: human immunodeficiency virus type 1 (kb-1 isolate)
C: lav-1 (aka human immunodeficiency virus 1)
D: None of the above. | [C] |
<Instruct>: Given the context 'In vitro, RNA aptamers raised against an HIV-1 Gag protein, lacking the N-terminal myristate and the C-terminal p6 (DP6-Gag), could bind to matrix protein (MA), nucleocapsid protein (NC), or entire DP6-Gag protein.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: human immunodeficiency virus type 1 (kb-1 isolate)
B: aids virus (aka human immunodeficiency virus)
C: human immunodeficiency virus type 1 hiv 1 (aka human immunodeficiency virus 1)
D: None of the above. | [C] |
<Instruct>: Given the context 'Binding studies revealed that the "NC-binders" specifically compete with the packaging signal (psi) of HIV-1 for binding to DP6-Gag.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
B: human immunodeficiency virus type 1 (kb-1 isolate)
C: lav-1 (aka human immunodeficiency virus 1)
D: None of the above. | [C] |
<Instruct>: Given the context 'Our results reveal an essential interaction between HIV-1 Gag and the psi-region that may be distinct from that which occurs during the encapsidation of genomic RNA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: human immunodeficiency virus type 1 hiv 1 (aka human immunodeficiency virus 1)
B: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
C: human immunodeficiency virus type 1 (kb-1 isolate)
D: None of the above. | [A] |
<Instruct>: Given the context 'Macaque long-term nonprogressors resist superinfection with multiple CD8+ T cell escape variants of simian immunodeficiency virus.
Human immunodeficiency virus (HIV)-positive individuals can be superinfected with different virus strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [simian immunodeficiency virus; human immunodeficiency virus; hiv]
<Options>: A: hiv-1 (aka human immunodeficiency virus 1)
B: aids virus (aka human immunodeficiency virus 2)
C: simian immunodeficiency virus sivmac (aka simian immunodeficiency virus - mac)
D: chimpanzee immunodeficiency virus (aka simian immunodeficiency virus)
E: simian immunodeficiency virus sivagm (aka simian immunodeficiency virus - agm)
F: aids virus (aka human immunodeficiency virus)
G: hiv (aka simian-human immunodeficiency virus) (aka simian-human immunodeficiency virus)
H: simian-chimpanzee immunodeficiency virus
I: hiv (aka human immunodeficiency virus 2) (aka human immunodeficiency virus 2)
J: human immunodeficiency virus 3 (hiv (aka human immunodeficiency virus 3))
K: hiv (aka human immunodeficiency virus 3) (aka human immunodeficiency virus 3)
L: hiv (aka human immunodeficiency virus 1) (aka human immunodeficiency virus 1)
M: simian immunodeficiency virus sivmon (aka simian immunodeficiency virus - mon)
N: None of the above. | [D; F; F] |
<Instruct>: Given the context 'Macaque long-term nonprogressors resist superinfection with multiple CD8+ T cell escape variants of simian immunodeficiency virus.
Human immunodeficiency virus (HIV)-positive individuals can be superinfected with different virus strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [simian immunodeficiency virus; human immunodeficiency virus; hiv]
<Options>: A: human immunodeficiency virus hiv-1 (aka human immunodeficiency virus 1)
B: simian-human immunodeficiency virus (shiv (aka simian-human immunodeficiency virus))
C: human immunodeficiency virus type 1 (aka human immunodeficiency virus 1)
D: simian immunodeficiency virus sivagm (aka simian immunodeficiency virus - agm)
E: aids virus (aka human immunodeficiency virus 2)
F: chimpanzee immunodeficiency virus (aka simian immunodeficiency virus)
G: aids virus (aka human immunodeficiency virus)
H: simian immunodeficiency virus sivsm (aka simian immunodeficiency virus - sm)
I: simian-chimpanzee immunodeficiency virus
J: hiv (aka simian-human immunodeficiency virus) (aka simian-human immunodeficiency virus)
K: human immunodeficiency virus 3 (hiv (aka human immunodeficiency virus 3))
L: None of the above. | [F; G; G] |
<Instruct>: Given the context 'Macaque long-term nonprogressors resist superinfection with multiple CD8+ T cell escape variants of simian immunodeficiency virus.
Human immunodeficiency virus (HIV)-positive individuals can be superinfected with different virus strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [simian immunodeficiency virus; human immunodeficiency virus; hiv]
<Options>: A: simian immunodeficiency virus - sm (simian immunodeficiency virus sivsm) (aka simian immunodeficiency virus - sm)
B: simian-chimpanzee immunodeficiency virus
C: human immunodeficiency virus 3 (hiv (aka human immunodeficiency virus 3))
D: hiv (aka simian-human immunodeficiency virus) (aka simian-human immunodeficiency virus)
E: hiv (aka human immunodeficiency virus 1) (aka human immunodeficiency virus 1)
F: simian-human immunodeficiency virus (shiv (aka simian-human immunodeficiency virus))
G: human immunodeficiency virus type 3 (aka human immunodeficiency virus 3)
H: simian immunodeficiency virus sivmon (aka simian immunodeficiency virus - mon)
I: simian immunodeficiency virus siv (aka simian immunodeficiency virus)
J: aids virus (aka human immunodeficiency virus 2)
K: aids virus (aka human immunodeficiency virus)
L: None of the above. | [I; K; K] |
<Instruct>: Given the context 'Individuals who control an initial HIV infection are therefore still at risk for subsequent infection with divergent viruses, but the barriers to such superinfection remain unclear.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv]
<Options>: A: hiv (aka human immunodeficiency virus 1) (aka human immunodeficiency virus 1)
B: human immunodeficiency virus 3 (hiv (aka human immunodeficiency virus 3))
C: aids virus (aka human immunodeficiency virus)
D: aids virus (aka human immunodeficiency virus 2)
E: None of the above. | [C] |
<Instruct>: Given the context 'Here we tested long-term nonprogressors' (LTNPs') susceptibility to superinfection using Indian rhesus macaques that express the major histocompatibility complex class I (MHC-I) allele', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [indian rhesus macaques]
<Options>: A: rhesus monkeys (aka macaca mulatta)
B: arunachal macaque (aka macaca munzala)
C: taiwan macaque (aka macaca cyclopis)
D: pigtail macaque (aka macaca nemestrina)
E: bonnet macaque (aka macaca radiata)
F: None of the above. | [A] |
<Instruct>: Given the context 'Here we tested long-term nonprogressors' (LTNPs') susceptibility to superinfection using Indian rhesus macaques that express the major histocompatibility complex class I (MHC-I) allele', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [indian rhesus macaques]
<Options>: A: taiwan macaque (aka macaca cyclopis)
B: arunachal macaque (aka macaca munzala)
C: pigtail macaque (aka macaca nemestrina)
D: bonnet macaque (aka macaca radiata)
E: None of the above. | [E] |
<Instruct>: Given the context 'Mamu-B 17, which is associated with control of the pathogenic AIDS virus SIVmac239.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [virus sivmac239]
<Options>: A: siv-wrc (aka simian immunodeficiency virus - wrc)
B: sansavirus
C: simian immunodeficiency virus sivmac (aka simian immunodeficiency virus - mac)
D: siv (aka simian immunodeficiency virus) (aka simian immunodeficiency virus)
E: siriri virus
F: None of the above. | [D] |
<Instruct>: Given the context 'Both LTNPs maintained robust immune responses, including simian immunodeficiency virus (SIV)-specific CD8(+) and CD4(+) T cells and neutralizing antibodies.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [simian immunodeficiency virus; siv]
<Options>: A: simian immunodeficiency virus sivagm (aka simian immunodeficiency virus - agm)
B: siv-derived immunization vector
C: shiv (aka simian-human immunodeficiency virus) (aka simian-human immunodeficiency virus)
D: sacri virus
E: chimpanzee immunodeficiency virus (aka simian immunodeficiency virus)
F: simian-human immunodeficiency virus 1
G: salmondvirus
H: sano virus
I: simian immunodeficiency virus sivmac (aka simian immunodeficiency virus - mac)
J: None of the above. | [E; E] |
<Instruct>: Given the context 'Both LTNPs maintained robust immune responses, including simian immunodeficiency virus (SIV)-specific CD8(+) and CD4(+) T cells and neutralizing antibodies.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [simian immunodeficiency virus; siv]
<Options>: A: siv/hiv (aka simian-human immunodeficiency virus)
B: simian immunodeficiency virus (tyo-1 isolate) (siv-agm) (aka simian immunodeficiency virus (tyo-1 isolate))
C: simian immunodeficiency virus sivcpz (aka simian immunodeficiency virus)
D: siv-wrc (aka simian immunodeficiency virus - wrc)
E: siv-sm (aka simian immunodeficiency virus - sm)
F: simian immunodeficiency virus - sm (simian immunodeficiency virus sivsm) (aka simian immunodeficiency virus - sm)
G: simian immunodeficiency virus sivmon (aka simian immunodeficiency virus - mon)
H: simian-human immunodeficiency virus 1
I: salmondvirus
J: None of the above. | [C; C] |
<Instruct>: Given the context 'First, we construct a quantitative food web for three dominant leaf miner species on the oak Quercus robur.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [quercus robur]
<Options>: A: quercus radiata
B: quercus laeta
C: quercus rugosa
D: pedunculate oak (aka quercus robur)
E: quercus oleoides
F: None of the above. | [D] |
<Instruct>: Given the context 'While only a small fraction of the parasitoid pool is shared among Tischeria ekebladella and each of two Phyllonorycter species, the parasitoid communities of the congeneric Phyllonorycter species overlap substantially.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tischeria ekebladella]
<Options>: A: taraxacum ekmanii
B: tischeria ekebladella (phalaena ekebladella) (aka tischeria ekebladella)
C: zenkerella egregia
D: catoptria fulgidella (tinea fulgidella) (aka catoptria fulgidella)
E: wolbachia endosymbiont of tischeria ekebladella
F: None of the above. | [B] |
<Instruct>: Given the context '4. Based on the structure of the food web, we predict strong short- and long-term indirect interactions between the Phyllonorycter species, and limited interactions between them and T. ekebladella.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. ekebladella]
<Options>: A: helobdella okhotica
B: tyrannobdella
C: phalaena ekebladella (aka tischeria ekebladella)
D: eulechria pallidella
E: oenochroa atradelpha (eulechria atradelpha) (aka oenochroa atradelpha)
F: None of the above. | [C] |
<Instruct>: Given the context 'As T. ekebladella is the main source of its own parasitoids, we expect to find intraspecific density-dependent parasitism in this species.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. ekebladella]
<Options>: A: trophonella echinolamellata (trophon echinolamellatus) (aka trophonella echinolamellata)
B: terebra laevigata
C: brachypodella
D: helobdella okhotica
E: tischeria ekebladella (phalaena ekebladella) (aka tischeria ekebladella)
F: None of the above. | [E] |
<Instruct>: Given the context '5. Consistent with these predictions, parasitism in T. ekebladella was high on trees with high densities of conspecifics in the previous generation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. ekebladella]
<Options>: A: batia lambdella (phalaena lambdella) (aka batia lambdella)
B: tischeria ekebladella (phalaena ekebladella) (aka tischeria ekebladella)
C: tyrannobdella
D: helobdella okhotica
E: entobdella
F: None of the above. | [B] |
<Instruct>: Given the context '5. Consistent with these predictions, parasitism in T. ekebladella was high on trees with high densities of conspecifics in the previous generation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. ekebladella]
<Options>: A: entobdella
B: tyrannobdella
C: helobdella okhotica
D: batia lambdella (phalaena lambdella) (aka batia lambdella)
E: None of the above. | [E] |
<Instruct>: Given the context 'Determinants that specify the integration pattern of retrotransposon Tf1 in the fbp1 promoter of Schizosaccharomyces pombe.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [schizosaccharomyces pombe]
<Options>: A: fission yeast (aka schizosaccharomyces pombe)
B: schizosaccharomyces versatilis
C: sphaerospermopsis (sphaerospermum) (aka sphaerospermopsis)
D: zygosaccharomyces sapae
E: zygosaccharomyces
F: None of the above. | [A] |
<Instruct>: Given the context 'The transposon Tf1 of Schizosaccharomyces pombe integrates with a strong preference for the promoters of polymerase II (Pol II)-transcribed genes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [schizosaccharomyces pombe]
<Options>: A: zygosaccharomyces
B: parasaccharomyces albicans (aka candida albicans)
C: schizosaccharomyces sp.
D: fission yeast (aka schizosaccharomyces pombe)
E: schizosaccharomyces pombe spk1820
F: None of the above. | [D] |
<Instruct>: Given the context 'An in-depth analysis of original antigenic sin in dengue virus infection.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue virus]
<Options>: A: denalis virus
B: denwin virus
C: dengue virus
D: dengue virus type 4 (dengue type 4 virus den4) (aka dengue virus type 4)
E: drosophila a virus
F: None of the above. | [C] |
<Instruct>: Given the context 'The evolution of dengue viruses has resulted in four antigenically similar yet distinct serotypes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue viruses]
<Options>: A: dengue virus
B: dengue virus type ii (aka dengue virus type 2)
C: denwin virus
D: drosophila a virus
E: dengue virus group (dengue viruses) (aka dengue virus group)
F: None of the above. | [A] |
<Instruct>: Given the context 'Dengue infection, although frequently mild, can lead to dengue hemorrhagic fever (DHF) which can be life threatening.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue]
<Options>: A: dengue-2 virus (aka dengue virus type 2)
B: dengue viruses (aka dengue virus group)
C: dengue virus
D: yellow fever mosquito (aka aedes aegypti)
E: dengue virus type 1 den1 (aka dengue virus type 1)
F: None of the above. | [C] |
<Instruct>: Given the context 'DHF is more common in secondary dengue infections, implying a role for the adaptive immune response in the disease.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue]
<Options>: A: dengue virus type 3 (dengue virus serotype 3) (aka dengue virus type 3)
B: dengue virus type ii (aka dengue virus type 2)
C: dengue virus
D: dengue viruses (aka dengue virus group)
E: yellow fever mosquito (aka aedes aegypti)
F: None of the above. | [C] |
<Instruct>: Given the context 'Domain 3 of the dengue virus envelope protein (ED3) has been suggested as one such candidate because it contains neutralizing epitopes and it was originally thought that relatively few cross-reactive antibodies are directed to this domain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue virus]
<Options>: A: dengue virus 1 (aka dengue virus type 1)
B: denalis virus
C: dengue virus type 4 (dengue type 4 virus den4) (aka dengue virus type 4)
D: denwin virus
E: dengue virus
F: None of the above. | [E] |
<Instruct>: Given the context 'In this study, we performed a detailed analysis of the anti-ED3 response in a cohort of patients suffering either primary or secondary dengue infections.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue]
<Options>: A: dengue virus type i (aka dengue virus type 1)
B: dengue virus type 2 (dengue virus serotype 2) (aka dengue virus type 2)
C: dengue virus
D: dengue viruses (aka dengue virus group)
E: dengue 3 virus (aka dengue virus type 3)
F: None of the above. | [C] |
<Instruct>: Given the context 'This has important implications for dengue vaccine design because heterologous boosting is likely to maintain the immunological footprint of the first vaccination.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue]
<Options>: A: yellow fever mosquito (aka aedes aegypti)
B: dengue viruses (aka dengue virus group)
C: dengue virus type 2 (dengue virus serotype 2) (aka dengue virus type 2)
D: dengue virus
E: type 1 dengue virus den-1 (aka dengue virus type 1)
F: None of the above. | [D] |
<Instruct>: Given the context 'On the basis of these findings, we propose a simple in vitro enzyme-linked immunosorbent assay (ELISA) to diagnose the original dengue infection in secondary dengue cases.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue]
<Options>: A: dengue virus 4 (aka dengue virus type 4)
B: dengue virus
C: dengue virus 1 (aka dengue virus type 1)
D: dengue viruses (aka dengue virus group)
E: dengue virus type 3 (dengue virus serotype 3) (aka dengue virus type 3)
F: None of the above. | [B] |
<Instruct>: Given the context 'On the basis of these findings, we propose a simple in vitro enzyme-linked immunosorbent assay (ELISA) to diagnose the original dengue infection in secondary dengue cases.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue]
<Options>: A: dengue virus 1 (aka dengue virus type 1)
B: dengue viruses (aka dengue virus group)
C: dengue virus 4 (aka dengue virus type 4)
D: dengue virus type 3 (dengue virus serotype 3) (aka dengue virus type 3)
E: None of the above. | [E] |
<Instruct>: Given the context 'Identification and structural characterization of the ALIX-binding late domains of simian immunodeficiency virus SIVmac239 and SIVagmTan-1.
Retroviral Gag proteins contain short late-domain motifs that recruit cellular ESCRT pathway proteins to facilitate virus budding.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [simian immunodeficiency virus; sivagmtan-1; retroviral]
<Options>: A: simian immunodeficiency virus sivmac (aka simian immunodeficiency virus - mac)
B: siv-agm (aka simian immunodeficiency virus (agm155 isolate))
C: simian immunodeficiency virus sivsm (aka simian immunodeficiency virus - sm)
D: hiv (aka simian-human immunodeficiency virus) (aka simian-human immunodeficiency virus)
E: retrovirus (aka unidentified retrovirus)
F: simian immunodeficiency virus (agm3 isolate) (siv-agm) (aka simian immunodeficiency virus (agm3 isolate))
G: smrv (aka squirrel monkey retrovirus) (aka squirrel monkey retrovirus)
H: siv-derived immunization vector
I: simian immunodeficiency virus sivmon (aka simian immunodeficiency virus - mon)
J: ram-1 (aka orthoreovirus)
K: avian retrovirus
L: mammalian type c retroviruses (aka gammaretrovirus)
M: civ (aka simian immunodeficiency virus) (aka simian immunodeficiency virus)
N: siv-mnd (aka simian immunodeficiency virus - mnd)
O: human betaretrovirus
P: None of the above. | [M; M; E] |
<Instruct>: Given the context 'Identification and structural characterization of the ALIX-binding late domains of simian immunodeficiency virus SIVmac239 and SIVagmTan-1.
Retroviral Gag proteins contain short late-domain motifs that recruit cellular ESCRT pathway proteins to facilitate virus budding.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [simian immunodeficiency virus; sivagmtan-1; retroviral]
<Options>: A: unidentified retrovirus (retrovirus) (aka unidentified retrovirus)
B: vir
C: siv-mac (aka simian immunodeficiency virus (mm142-83 isolate))
D: siv-mnd (aka simian immunodeficiency virus - mnd)
E: simian immunodeficiency virus (tyo-1 isolate) (siv-agm) (aka simian immunodeficiency virus (tyo-1 isolate))
F: shiv (aka simian-human immunodeficiency virus) (aka simian-human immunodeficiency virus)
G: simian immunodeficiency virus siv-mnd 1
H: simian-chimpanzee immunodeficiency virus
I: simian immunodeficiency virus (chimpanzee immunodeficiency virus (siv(cpz))) (aka simian immunodeficiency virus)
J: simian immunodeficiency virus sivagm (aka simian immunodeficiency virus - agm)
K: siv-derived immunization vector
L: replication competent viruses
M: simian immunodeficiency virus - sm (simian immunodeficiency virus sivsm) (aka simian immunodeficiency virus - sm)
N: human type d retrovirus (human retrovirus type d) (aka human type d retrovirus)
O: squirrel monkey retrovirus (smrv (aka squirrel monkey retrovirus))
P: None of the above. | [I; I; A] |
<Instruct>: Given the context 'Identification and structural characterization of the ALIX-binding late domains of simian immunodeficiency virus SIVmac239 and SIVagmTan-1.
Retroviral Gag proteins contain short late-domain motifs that recruit cellular ESCRT pathway proteins to facilitate virus budding.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [simian immunodeficiency virus; sivagmtan-1; retroviral]
<Options>: A: simian immunodeficiency virus siv (aka simian immunodeficiency virus)
B: unidentified retrovirus (retrovirus) (aka unidentified retrovirus)
C: siv-2 (aka simian immunodeficiency virus siv-mnd 2)
D: human betaretrovirus
E: siv-agm (aka simian immunodeficiency virus (agm3 isolate))
F: recombinant virus sivmac239delta3-vmip-ii
G: shiv (aka simian-human immunodeficiency virus) (aka simian-human immunodeficiency virus)
H: simian immunodeficiency virus sivmac (aka simian immunodeficiency virus - mac)
I: siv-agm (aka simian immunodeficiency virus (tyo-1 isolate))
J: simian immunodeficiency virus sivsm (aka simian immunodeficiency virus - sm)
K: avian retroviruses
L: simian immunodeficiency virus sivmon (aka simian immunodeficiency virus - mon)
M: replication defective viruses
N: siv-derived immunization vector
O: human type d retrovirus (human retrovirus type d) (aka human type d retrovirus)
P: None of the above. | [A; A; B] |
<Instruct>: Given the context 'However, some simian immunodeficiency virus (SIV) Gag proteins lack this consensus sequence, yet still bind ALIX.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [simian immunodeficiency virus; siv]
<Options>: A: shiv (aka simian-human immunodeficiency virus) (aka simian-human immunodeficiency virus)
B: simian immunodeficiency virus sivmac (aka simian immunodeficiency virus - mac)
C: sano virus
D: simian immunodeficiency virus - sm (simian immunodeficiency virus sivsm) (aka simian immunodeficiency virus - sm)
E: simian immunodeficiency virus, siv (aka simian immunodeficiency virus)
F: siv-wrc (aka simian immunodeficiency virus - wrc)
G: simian immunodeficiency virus sivmon (aka simian immunodeficiency virus - mon)
H: simian immunodeficiency virus (tyo-1 isolate) (siv-agm) (aka simian immunodeficiency virus (tyo-1 isolate))
I: swinepox virus
J: None of the above. | [E; E] |
<Instruct>: Given the context 'However, some simian immunodeficiency virus (SIV) Gag proteins lack this consensus sequence, yet still bind ALIX.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [simian immunodeficiency virus; siv]
<Options>: A: simian-human immunodeficiency virus 1
B: sano virus
C: salmondvirus
D: siv/hiv (aka simian-human immunodeficiency virus)
E: simian immunodeficiency virus (tyo-1 isolate) (siv-agm) (aka simian immunodeficiency virus (tyo-1 isolate))
F: simian immunodeficiency virus sivsm (aka simian immunodeficiency virus - sm)
G: simian-chimpanzee immunodeficiency virus
H: chimpanzee immunodeficiency virus (aka simian immunodeficiency virus)
I: None of the above. | [H; H] |
<Instruct>: Given the context '((40)SREKPYKEVTEDLLHLNSLF(59)) and SIV(agmTan-1) ((24)AAGAYDPARKLLEQYAKK(41)).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [siv(agmtan-1)]
<Options>: A: simian immunodeficiency virus - agm.tan-1
B: siv-mac (aka simian immunodeficiency virus (mm251 isolate))
C: simian immunodeficiency virus - agm (simian immunodeficiency virus sivmac-251) (aka simian immunodeficiency virus - agm)
D: simian immunodeficiency virus - agm.sab-1
E: siv-mac (aka simian immunodeficiency virus (mm142-83 isolate))
F: None of the above. | [F] |
<Instruct>: Given the context 'Replicative and transcriptional activities of hepatitis B virus in patients coinfected with hepatitis B and hepatitis delta viruses.
Hepatitis B virus (HBV) and hepatitis delta virus (HDV) interplay was investigated by examining liver and serum samples from 21 coinfected and 22 HBV-monoinfected patients with chronic liver disease.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis b virus; hepatitis b; hepatitis delta viruses]
<Options>: A: hepatitis d virus (isolate tw2476) (aka hepatitis delta virus (isolate tw2476))
B: hepatovirus b
C: hepatitis a virus (aka hepatovirus a)
D: hepatitis gb virus b (aka gb virus-b)
E: horseshoe bat hepatitis b virus (hbhbv) (aka horseshoe bat hepatitis b virus)
F: hepatitis d virus 1
G: hepatitis delta virus (hdv (aka hepatitis delta virus))
H: hepatitis b virus 2
I: hepatitis b virus (subtype adw) (aka hepatitis b virus subtype adw)
J: hepatitis b virus genotype a (hbv genotype a) (aka hepatitis b virus genotype a)
K: hepatitis b virus (human hepatitis b virus hbv) (aka hepatitis b virus)
L: hepatitis delta virus (isolate italian) (hepatitis d virus (isolate italian)) (aka hepatitis delta virus (isolate italian))
M: hepatitis delta virus (isolate us-2) (hepatitis d virus (isolate us-2)) (aka hepatitis delta virus (isolate us-2))
N: None of the above. | [K; K; G] |
<Instruct>: Given the context 'Replicative and transcriptional activities of hepatitis B virus in patients coinfected with hepatitis B and hepatitis delta viruses.
Hepatitis B virus (HBV) and hepatitis delta virus (HDV) interplay was investigated by examining liver and serum samples from 21 coinfected and 22 HBV-monoinfected patients with chronic liver disease.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis b virus; hepatitis b; hepatitis delta viruses]
<Options>: A: hepatovirus d
B: horseshoe bat hepatitis b virus (hbhbv) (aka horseshoe bat hepatitis b virus)
C: hepatitis d virus 1
D: hepatitis d virus 3
E: hepatitis b virus (subtype adw) (aka hepatitis b virus subtype adw)
F: hepatitis a virus (aka hepatovirus a)
G: hepatitis b virus (hbv) (aka hepatitis b virus)
H: hepatovirus b
I: hepatitis b-type viruses (aka hepadnaviridae)
J: heron hepatitis b virus (hhbv (aka heron hepatitis b virus))
K: hepatitis delta virus (isolate us-2) (hepatitis d virus (isolate us-2)) (aka hepatitis delta virus (isolate us-2))
L: hdv (aka hepatitis delta virus) (aka hepatitis delta virus)
M: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
N: None of the above. | [G; G; L] |
<Instruct>: Given the context 'Replicative and transcriptional activities of hepatitis B virus in patients coinfected with hepatitis B and hepatitis delta viruses.
Hepatitis B virus (HBV) and hepatitis delta virus (HDV) interplay was investigated by examining liver and serum samples from 21 coinfected and 22 HBV-monoinfected patients with chronic liver disease.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis b virus; hepatitis b; hepatitis delta viruses]
<Options>: A: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
B: heron hepatitis b virus (hhbv (aka heron hepatitis b virus))
C: hepatitis d virus 1
D: hepatitis b virus (hbv) (aka hepatitis b virus)
E: hepatitis b virus (subtype adw) (aka hepatitis b virus subtype adw)
F: hepatovirus d
G: horseshoe bat hepatitis b virus (hbhbv) (aka horseshoe bat hepatitis b virus)
H: hepatitis b-type viruses (aka hepadnaviridae)
I: hepatovirus b
J: hepatitis delta virus (isolate us-2) (hepatitis d virus (isolate us-2)) (aka hepatitis delta virus (isolate us-2))
K: hepatitis d virus 3
L: hepatitis a virus (aka hepatovirus a)
M: None of the above. | [D; D; M] |
<Instruct>: Given the context 'Replicative and transcriptional activities of hepatitis B virus in patients coinfected with hepatitis B and hepatitis delta viruses.
Hepatitis B virus (HBV) and hepatitis delta virus (HDV) interplay was investigated by examining liver and serum samples from 21 coinfected and 22 HBV-monoinfected patients with chronic liver disease.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis b virus; hepatitis b; hepatitis delta viruses]
<Options>: A: hepatitis b virus (hbv) (aka hepatitis b virus)
B: hepatovirus b
C: hepatitis gb virus b (aka gb virus-b)
D: hepatitis a virus (aka hepatovirus a)
E: hepatitis delta virus (isolate us-2) (hepatitis d virus (isolate us-2)) (aka hepatitis delta virus (isolate us-2))
F: hepatitis d virus 2
G: heron hepatitis b virus (hhbv (aka heron hepatitis b virus))
H: hbv genotype b (aka hepatitis b virus genotype b)
I: hepatitis delta virus (isolate tw2476) (hepatitis d virus (isolate tw2476)) (aka hepatitis delta virus (isolate tw2476))
J: gb virus-b (hepatitis gb virus b) (aka gb virus-b)
K: hepatitis b virus (subtype adw) (aka hepatitis b virus subtype adw)
L: hepatitis b virus 2
M: hepatitis d virus (aka hepatitis delta virus)
N: hepatitis d virus 3
O: None of the above. | [A; A; M] |
<Instruct>: Given the context 'Replicative and transcriptional activities of hepatitis B virus in patients coinfected with hepatitis B and hepatitis delta viruses.
Hepatitis B virus (HBV) and hepatitis delta virus (HDV) interplay was investigated by examining liver and serum samples from 21 coinfected and 22 HBV-monoinfected patients with chronic liver disease.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv; hepatitis delta virus; hdv]
<Options>: A: domestic dog hepadnavirus
B: hbv-i (aka hepatitis b virus genotype i)
C: hepatitis b virus (human hepatitis b virus hbv) (aka hepatitis b virus)
D: hepatitis d virus 3
E: bat hepatitis b virus
F: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
G: hdv-4 (aka deltavirus taiwanense)
H: hepatitis d virus 1
I: hepatitis delta virus (isolate us-2) (hepatitis d virus (isolate us-2)) (aka hepatitis delta virus (isolate us-2))
J: hbhbv (aka horseshoe bat hepatitis b virus)
K: avian hdv-like agent
L: hepatitis delta virus hdv (aka hepatitis delta virus)
M: rhdv (aka rabbit hemorrhagic disease virus) (aka rabbit hemorrhagic disease virus)
N: hepatitis delta virus (isolate tw2476) (hepatitis d virus (isolate tw2476)) (aka hepatitis delta virus (isolate tw2476))
O: None of the above. | [C; L; L] |
<Instruct>: Given the context 'Replicative and transcriptional activities of hepatitis B virus in patients coinfected with hepatitis B and hepatitis delta viruses.
Hepatitis B virus (HBV) and hepatitis delta virus (HDV) interplay was investigated by examining liver and serum samples from 21 coinfected and 22 HBV-monoinfected patients with chronic liver disease.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv; hepatitis delta virus; hdv]
<Options>: A: horseshoe bat hepatitis b virus (hbhbv) (aka horseshoe bat hepatitis b virus)
B: hdv-2 (aka deltavirus japanense)
C: hordeivirus
D: hepatitis d virus (aka hepatitis delta virus)
E: hepatitis x virus (hxhv (aka hepatitis x virus))
F: hepatitis b-type viruses (aka hepadnaviridae)
G: hepatitis d virus (isolate tw2476) (aka hepatitis delta virus (isolate tw2476))
H: duck hepatitis b virus (dhbv (aka duck hepatitis b virus))
I: avian hdv-like agent
J: non-human hbv
K: hdv-3 (aka deltavirus peruense)
L: hepatitis b virus, hbv (aka hepatitis b virus)
M: hepatitis gb virus b (aka gb virus-b)
N: hepatitis delta virus (isolate us-2) (hepatitis d virus (isolate us-2)) (aka hepatitis delta virus (isolate us-2))
O: None of the above. | [L; D; D] |
<Instruct>: Given the context 'Replicative and transcriptional activities of hepatitis B virus in patients coinfected with hepatitis B and hepatitis delta viruses.
Hepatitis B virus (HBV) and hepatitis delta virus (HDV) interplay was investigated by examining liver and serum samples from 21 coinfected and 22 HBV-monoinfected patients with chronic liver disease.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv; hepatitis delta virus; hdv]
<Options>: A: hbv-i (aka hepatitis b virus genotype i)
B: brdv (aka broadhaven virus) (aka broadhaven virus)
C: hepatitis d virus (isolate italian) (aka hepatitis delta virus (isolate italian))
D: hepatitis d virus 2
E: rhdv (aka rabbit hemorrhagic disease virus) (aka rabbit hemorrhagic disease virus)
F: hdv-1 (aka deltavirus italiense)
G: hdv-2 (aka deltavirus japanense)
H: hepatitis d virus (aka hepatitis delta virus)
I: hepatitis b virus (human hepatitis b virus hbv) (aka hepatitis b virus)
J: gb virus-b (hepatitis gb virus b) (aka gb virus-b)
K: human hepatitis b virus (aka hepatitis b virus)
L: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
M: hbhbv (aka horseshoe bat hepatitis b virus)
N: hepatovirus d
O: None of the above. | [I; H; H] |
<Instruct>: Given the context 'Different real-time PCR assays were applied to evaluate intrahepatic amounts of HBV DNA, covalently closed circular DNA (cccDNA), pregenomic RNA (pgRNA), pre-S/S RNAs, and HDV RNA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv; hdv]
<Options>: A: hbhbv (aka horseshoe bat hepatitis b virus)
B: hepatitis delta virus (hdv (aka hepatitis delta virus))
C: hbv-i (aka hepatitis b virus genotype i)
D: domestic dog hepadnavirus
E: hepatitis b virus genotype b (hbv genotype b) (aka hepatitis b virus genotype b)
F: rhdv (aka rabbit hemorrhagic disease virus) (aka rabbit hemorrhagic disease virus)
G: hepatitis b virus (hbv) (aka hepatitis b virus)
H: avian hdv-like agent
I: human type d retrovirus (human retrovirus type d) (aka human type d retrovirus)
J: non-human hbv
K: None of the above. | [G; B] |
<Instruct>: Given the context 'Different real-time PCR assays were applied to evaluate intrahepatic amounts of HBV DNA, covalently closed circular DNA (cccDNA), pregenomic RNA (pgRNA), pre-S/S RNAs, and HDV RNA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv; hdv]
<Options>: A: hihdivirus
B: avian hdv-like agent
C: bat hepatitis b virus
D: durham virus
E: duck hepatitis b virus (dhbv (aka duck hepatitis b virus))
F: hordeivirus
G: hepatitis delta virus hdv (aka hepatitis delta virus)
H: hepatitis b-type viruses (aka hepadnaviridae)
I: gb virus-b (hepatitis gb virus b) (aka gb virus-b)
J: human hepatitis b virus hbv (aka hepatitis b virus)
K: None of the above. | [J; G] |
<Instruct>: Given the context 'Besides HBV DNA and HDV RNA levels, HBsAg concentrations in the sera were also determined.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv; hdv]
<Options>: A: bat hepatitis b virus
B: human type d retrovirus (human retrovirus type d) (aka human type d retrovirus)
C: hepatitis delta virus (hdv (aka hepatitis delta virus))
D: hepatitis b virus, hbv (aka hepatitis b virus)
E: rhdv-sd (aka rabbit hemorrhagic disease virus-sd)
F: dhbv (aka duck hepatitis b virus) (aka duck hepatitis b virus)
G: gb virus-b (hepatitis gb virus b) (aka gb virus-b)
H: hbhbv (aka horseshoe bat hepatitis b virus)
I: hdv-4 (aka deltavirus taiwanense)
J: hdv-2 (aka deltavirus japanense)
K: None of the above. | [D; C] |
<Instruct>: Given the context 'Besides HBV DNA and HDV RNA levels, HBsAg concentrations in the sera were also determined.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv; hdv]
<Options>: A: gb virus-b (hepatitis gb virus b) (aka gb virus-b)
B: rhdv-sd (aka rabbit hemorrhagic disease virus-sd)
C: hdv (aka hepatitis delta virus) (aka hepatitis delta virus)
D: hepatitis b-type viruses (aka hepadnaviridae)
E: hepatitis b virus (human hepatitis b virus hbv) (aka hepatitis b virus)
F: bat hepatitis b virus
G: avian hdv-like agent
H: hihdivirus
I: hbv-i (aka hepatitis b virus genotype i)
J: hdv-3 (aka deltavirus peruense)
K: None of the above. | [E; C] |
<Instruct>: Given the context 'Besides HBV DNA and HDV RNA levels, HBsAg concentrations in the sera were also determined.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv; hdv]
<Options>: A: bat hepatitis b virus
B: rhdv-sd (aka rabbit hemorrhagic disease virus-sd)
C: gb virus-b (hepatitis gb virus b) (aka gb virus-b)
D: hihdivirus
E: avian hdv-like agent
F: hbv-i (aka hepatitis b virus genotype i)
G: hdv (aka hepatitis delta virus) (aka hepatitis delta virus)
H: hepatitis b-type viruses (aka hepadnaviridae)
I: hdv-3 (aka deltavirus peruense)
J: None of the above. | [J; G] |
<Instruct>: Given the context 'HDV-coinfected cases showed significantly lower median levels of serum HBV DNA (-5 log), intrahepatic relaxed-circular DNA (-2 log), and cccDNA (-2 log) than those of HBV-monoinfected cases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv; hbv]
<Options>: A: duck hepatitis b virus (dhbv (aka duck hepatitis b virus))
B: human hepatitis b virus hbv (aka hepatitis b virus)
C: deltavirus italiense (hdv-1) (aka deltavirus italiense)
D: hepatitis b-type viruses (aka hepadnaviridae)
E: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
F: dhv-1 (aka avihepatovirus a)
G: hdv (aka hepatitis delta virus) (aka hepatitis delta virus)
H: domestic dog hepadnavirus
I: hbhbv (aka horseshoe bat hepatitis b virus)
J: human enterovirus d (aka enterovirus d)
K: None of the above. | [G; B] |
<Instruct>: Given the context 'HDV-coinfected cases showed significantly lower median levels of serum HBV DNA (-5 log), intrahepatic relaxed-circular DNA (-2 log), and cccDNA (-2 log) than those of HBV-monoinfected cases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv; hbv]
<Options>: A: duck hepatitis b virus (dhbv (aka duck hepatitis b virus))
B: hepatitis delta virus (hdv (aka hepatitis delta virus))
C: human type d retrovirus (human retrovirus type d) (aka human type d retrovirus)
D: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
E: deltavirus italiense (hdv-1) (aka deltavirus italiense)
F: hepatitis b virus hbv (aka hepatitis b virus)
G: non-human hbv
H: hdv-2 (aka deltavirus japanense)
I: hbv-i (aka hepatitis b virus genotype i)
J: rhdv (aka rabbit hemorrhagic disease virus) (aka rabbit hemorrhagic disease virus)
K: None of the above. | [B; F] |
<Instruct>: Given the context 'RNA amounts were significantly lower (both -1 log) in HDV-positive patients, whereas serum HBsAg concentrations were comparable between the two patient groups.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv]
<Options>: A: dhv-1 (aka avihepatovirus a)
B: hdv-2 (aka deltavirus japanense)
C: hihdivirus
D: hepatitis delta virus (hdv (aka hepatitis delta virus))
E: rhdv-sd (aka rabbit hemorrhagic disease virus-sd)
F: None of the above. | [D] |
<Instruct>: Given the context 'Pre-S/S RNA and HBsAg amounts per cccDNA molecule were higher in HDV-positive patients (3-fold and 1 log, respectively), showing that HBV replication was reduced, whereas synthesis of envelope proteins was not specifically decreased.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv; hbv]
<Options>: A: hdv-3 (aka deltavirus peruense)
B: dhbv (aka duck hepatitis b virus) (aka duck hepatitis b virus)
C: rhdv-sd (aka rabbit hemorrhagic disease virus-sd)
D: non-human hbv
E: human hepatitis b virus (aka hepatitis b virus)
F: hepatitis b virus (subtype ayw) (aka hepatitis b virus subtype ayw)
G: durham virus
H: hdv-4 (aka deltavirus taiwanense)
I: bat hepatitis b virus
J: hdv (aka hepatitis delta virus) (aka hepatitis delta virus)
K: None of the above. | [J; E] |
<Instruct>: Given the context 'Pre-S/S RNA and HBsAg amounts per cccDNA molecule were higher in HDV-positive patients (3-fold and 1 log, respectively), showing that HBV replication was reduced, whereas synthesis of envelope proteins was not specifically decreased.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv; hbv]
<Options>: A: hepatitis d virus (aka hepatitis delta virus)
B: human enterovirus d (aka enterovirus d)
C: dhv-1 (aka avihepatovirus a)
D: gb virus-b (hepatitis gb virus b) (aka gb virus-b)
E: hepatitis b virus, hbv (aka hepatitis b virus)
F: avian hdv-like agent
G: hbv genotype b (aka hepatitis b virus genotype b)
H: hbv-i (aka hepatitis b virus genotype i)
I: hihdivirus
J: hbhbv (aka horseshoe bat hepatitis b virus)
K: None of the above. | [A; E] |
<Instruct>: Given the context 'The ratios of cccDNA to intracellular total HBV DNA showed a larger proportion of cccDNA molecules in HDV-positive cases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv; hdv]
<Options>: A: hepatitis b-type viruses (aka hepadnaviridae)
B: bat hepatitis b virus
C: hepatitis b virus (human hepatitis b virus hbv) (aka hepatitis b virus)
D: hdv-2 (aka deltavirus japanense)
E: rhdv (aka rabbit hemorrhagic disease virus) (aka rabbit hemorrhagic disease virus)
F: dhbv (aka duck hepatitis b virus) (aka duck hepatitis b virus)
G: hepatitis delta virus (hdv (aka hepatitis delta virus))
H: rhdv-sd (aka rabbit hemorrhagic disease virus-sd)
I: hihdivirus
J: gb virus-b (hepatitis gb virus b) (aka gb virus-b)
K: None of the above. | [C; G] |
<Instruct>: Given the context 'The ratios of cccDNA to intracellular total HBV DNA showed a larger proportion of cccDNA molecules in HDV-positive cases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv; hdv]
<Options>: A: hdv-4 (aka deltavirus taiwanense)
B: hdv-3 (aka deltavirus peruense)
C: hdv (aka hepatitis delta virus) (aka hepatitis delta virus)
D: hepatitis b-type viruses (aka hepadnaviridae)
E: human enterovirus d (aka enterovirus d)
F: rhdv (aka rabbit hemorrhagic disease virus) (aka rabbit hemorrhagic disease virus)
G: hepatitis b virus (human hepatitis b virus hbv) (aka hepatitis b virus)
H: non-human hbv
I: horseshoe bat hepatitis b virus (hbhbv) (aka horseshoe bat hepatitis b virus)
J: hbv genotype b (aka hepatitis b virus genotype b)
K: None of the above. | [G; C] |
<Instruct>: Given the context 'For these patients, both intrahepatic and serum HDV RNA amounts were associated with cccDNA but not with HBsAg or HBV DNA levels.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv]
<Options>: A: domestic dog hepadnavirus
B: rhdv (aka rabbit hemorrhagic disease virus) (aka rabbit hemorrhagic disease virus)
C: hordeivirus
D: hepatitis delta virus (hdv (aka hepatitis delta virus))
E: rhdv-sd (aka rabbit hemorrhagic disease virus-sd)
F: None of the above. | [D] |
<Instruct>: Given the context 'Finally, HBV genomes with large deletions in the basal core promoter/precore region were detected in 5/21 HDV-positive patients but in no HDV-negative patients and were associated with lower viremia levels.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hdv]
<Options>: A: avian hdv-like agent
B: hepatitis delta virus (hdv (aka hepatitis delta virus))
C: rhdv-sd (aka rabbit hemorrhagic disease virus-sd)
D: durham virus
E: domestic dog hepadnavirus
F: None of the above. | [B] |
<Instruct>: Given the context 'These findings provide significant information about the interference exerted by HDV on HBV replication and transcription activities in the human liver.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv; human]
<Options>: A: neandertal man (aka homo sapiens neanderthalensis)
B: non-human hbv
C: bat hepatitis b virus
D: hbv-i (aka hepatitis b virus genotype i)
E: hepatitis b virus, hbv (aka hepatitis b virus)
F: hominidae (great apes) (aka hominidae)
G: humans (aka homo)
H: pediculus humanus corporis (pediculus humanus humanus) (aka pediculus humanus corporis)
I: human (aka homo sapiens)
J: dhbv (aka duck hepatitis b virus) (aka duck hepatitis b virus)
K: None of the above. | [E; I] |
<Instruct>: Given the context 'These findings provide significant information about the interference exerted by HDV on HBV replication and transcription activities in the human liver.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hbv; human]
<Options>: A: carcharhinus humani
B: pediculus humanus humanus (aka pediculus humanus corporis)
C: bat hepatitis b virus
D: homo (humans) (aka homo)
E: human (aka homo sapiens)
F: dhbv (aka duck hepatitis b virus) (aka duck hepatitis b virus)
G: horseshoe bat hepatitis b virus (hbhbv) (aka horseshoe bat hepatitis b virus)
H: hepatitis b virus (human hepatitis b virus hbv) (aka hepatitis b virus)
I: gb virus-b (hepatitis gb virus b) (aka gb virus-b)
J: sphaeria humana (aka sordaria humana)
K: None of the above. | [H; E] |
<Instruct>: Given the context 'Hepatitis C virus NS2 protein serves as a scaffold for virus assembly by interacting with both structural and nonstructural proteins.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis c virus]
<Options>: A: hepatitis a virus (aka hepatovirus a)
B: human hepatitis c virus hcv (aka hepacivirus hominis)
C: hepatitis b virus (hbv) (aka hepatitis b virus)
D: hepatitis b virus type c (aka hepatitis b virus genotype c)
E: hepatitis c viruses (aka hepacivirus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Hepatitis C virus NS2 protein serves as a scaffold for virus assembly by interacting with both structural and nonstructural proteins.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis c virus]
<Options>: A: hepatitis b virus type c (aka hepatitis b virus genotype c)
B: hepatitis c viruses (aka hepacivirus)
C: hepatitis b virus (hbv) (aka hepatitis b virus)
D: hepatitis a virus (aka hepatovirus a)
E: None of the above. | [E] |
<Instruct>: Given the context 'Many aspects of the assembly of hepatitis C virus (HCV) remain incompletely understood.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis c virus; hcv]
<Options>: A: hepatitis c virus (isolate 1)
B: hcv-h (aka hepatitis c virus (isolate h))
C: hcv (aka hepacivirus hominis) (aka hepacivirus hominis)
D: hcv-hun (aka hepatitis c virus (isolate hunan))
E: human hepatitis a virus (hhav (aka human hepatitis a virus))
F: hepatitis c-like viruses (aka hepacivirus)
G: hepatitis a virus (aka hepatovirus a)
H: hhav (aka human hepatitis a virus) (aka human hepatitis a virus)
I: human hepatitis b virus (aka hepatitis b virus)
J: None of the above. | [C; C] |
<Instruct>: Given the context 'Many aspects of the assembly of hepatitis C virus (HCV) remain incompletely understood.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hepatitis c virus; hcv]
<Options>: A: hbv (aka hepatitis b virus) (aka hepatitis b virus)
B: hepatitis b virus type c (aka hepatitis b virus genotype c)
C: hepacivirus (hepatitis c-like viruses) (aka hepacivirus)
D: hepatitis a virus (aka hepatovirus a)
E: hepatitis c virus subtype 6v
F: hepatitis c virus (isolate 1)
G: human hepatitis c virus (aka hepacivirus hominis)
H: human hepatitis circovirus
I: None of the above. | [G; G] |
<Instruct>: Given the context 'To characterize the role of NS2 in the production of infectious virus, we determined NS2 interaction partners among other HCV proteins during productive infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcv]
<Options>: A: hcv-hun (aka hepatitis c virus (isolate hunan))
B: hepatovirus c
C: hcv (aka hepacivirus hominis) (aka hepacivirus hominis)
D: hepacivirus (hepatitis c-like viruses) (aka hepacivirus)
E: hepatitis c virus (isolate 1)
F: None of the above. | [C] |
<Instruct>: Given the context 'Draft genome sequence of the anoxygenic filamentous phototrophic bacterium Oscillochloris trichoides subsp. DG-6.
Oscillochloris trichoides is a mesophilic, filamentous, photoautotrophic, nonsulfur, diazotrophic bacterium which is capable of carbon dioxide fixation via the reductive pentose phosphate cycle and possesses no assimilative sulfate reduction.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [oscillochloris trichoides subsp. dg-6; oscillochloris trichoides]
<Options>: A: chlorella vulgaris (chlorella vulgaris var. viridis) (aka chlorella vulgaris)
B: oscillaria caviae (aka oscillospira guilliermondii)
C: dictyochloropsis irregularis (aka symbiochloris irregularis)
D: oscillantichloris chrysea (aka oscillochloris chrysea)
E: dialonectria trichospora (aka ophionectria trichospora)
F: oscillochloris trichoides (oscillatoria trichoides) (aka oscillochloris trichoides)
G: oscillochloris (oscillantichloris) (aka oscillochloris)
H: symbiochloris irregularis (dictyochloropsis irregularis) (aka symbiochloris irregularis)
I: oscillatoria coerulescens (aka oscillochloris chrysea)
J: None of the above. | [F; F] |
<Instruct>: Given the context 'Draft genome sequence of the anoxygenic filamentous phototrophic bacterium Oscillochloris trichoides subsp. DG-6.
Oscillochloris trichoides is a mesophilic, filamentous, photoautotrophic, nonsulfur, diazotrophic bacterium which is capable of carbon dioxide fixation via the reductive pentose phosphate cycle and possesses no assimilative sulfate reduction.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [oscillochloris trichoides subsp. dg-6; oscillochloris trichoides]
<Options>: A: oscillochloris fontis (aka candidatus oscillochloris fontis)
B: chlorella vulgaris (chlorella vulgaris var. viridis) (aka chlorella vulgaris)
C: oscillochloridaceae bacterium
D: toxothrix trichogenes
E: xylochloris irregularis
F: amphioplus trichoides
G: symbiochloris irregularis (dictyochloropsis irregularis) (aka symbiochloris irregularis)
H: oscillochloris trichoides (oscillatoria trichoides) (aka oscillochloris trichoides)
I: oscillaria caviae (aka oscillospira guilliermondii)
J: None of the above. | [H; H] |
<Instruct>: Given the context 'Here, we present the draft genome sequence of Oscillochloris trichoides subsp. DG-6, the type strain of the species, which has permitted the prediction of genes for carbon and nitrogen metabolism and for the light-harvesting apparatus.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [oscillochloris trichoides subsp. dg-6]
<Options>: A: oscillochloris (oscillantichloris) (aka oscillochloris)
B: oscillatoria trichoides (aka oscillochloris trichoides)
C: oscillochloridaceae bacterium
D: oscillaria caviae (aka oscillospira guilliermondii)
E: ca. oscillochloris fontis (aka candidatus oscillochloris fontis)
F: None of the above. | [B] |
<Instruct>: Given the context 'Here, we present the draft genome sequence of Oscillochloris trichoides subsp. DG-6, the type strain of the species, which has permitted the prediction of genes for carbon and nitrogen metabolism and for the light-harvesting apparatus.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [oscillochloris trichoides subsp. dg-6]
<Options>: A: oscillochloris (oscillantichloris) (aka oscillochloris)
B: oscillochloridaceae bacterium
C: oscillaria caviae (aka oscillospira guilliermondii)
D: ca. oscillochloris fontis (aka candidatus oscillochloris fontis)
E: None of the above. | [E] |
<Instruct>: Given the context '2. We tested empirically whether the egg distribution patterns arising from oviposition behaviours persisted and were reflected in the distribution patterns of larval Baetis rhodani.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [baetis rhodani]
<Options>: A: rhodocybe striatula (aka gamundia striatula)
B: bradyrhizobium rifense
C: biatora rhodopsis (aka malmidea rhodopsis)
D: baetis rhodani
E: barleria rhodesiaca
F: None of the above. | [D] |
<Instruct>: Given the context 'Overall, the results suggest that most neonate and mid-stage larvae of B. rhodani remain close to the natal riffle, and late-stage larvae disperse shorter distances than routinely assumed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. rhodani]
<Options>: A: rhodosporidiobolus
B: rhodococcus oryzae
C: baetis rhodani
D: rhodotorula graminis
E: bacteridium anthracis (aka bacillus anthracis)
F: None of the above. | [C] |
<Instruct>: Given the context '2. We tested these predictions with root voles (Microtus oeconomus) by a manipulation of individual condition through litter-size enlargement and reduction during lactation combined with a manipulation of habitat quality through degradation of the vegetation cover.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [root voles; microtus oeconomus]
<Options>: A: root vole (aka alexandromys oeconomus)
B: southwestern water vole (aka arvicola sapidus)
C: microtus chrotorrhinus (rock vole) (aka microtus chrotorrhinus)
D: rock vole (aka microtus chrotorrhinus)
E: microtus umbrosus
F: microtus tatricus
G: red spiny rat (aka maxomys surifer)
H: microtus oeconomus medius (aka alexandromys oeconomus medius)
I: montane water vole (aka arvicola scherman)
J: None of the above. | [A; A] |
<Instruct>: Given the context '2. We tested these predictions with root voles (Microtus oeconomus) by a manipulation of individual condition through litter-size enlargement and reduction during lactation combined with a manipulation of habitat quality through degradation of the vegetation cover.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [root voles; microtus oeconomus]
<Options>: A: rattus surifer (aka maxomys surifer)
B: root vole (aka alexandromys oeconomus)
C: microtus umbrosus
D: east european vole (aka microtus levis)
E: microtus agrestis (short-tailed field vole) (aka microtus agrestis)
F: microtus bavaricus
G: volvox reticuliferus
H: smokey vole (aka neodon fuscus)
I: royal vole (aka myodes regulus)
J: None of the above. | [B; B] |
<Instruct>: Given the context 'Symbiotic Chlorella vulgaris of the ciliate Paramecium bursaria plays an important role in maintaining perialgal vacuole membrane functions.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [chlorella vulgaris; paramecium bursaria]
<Options>: A: chlorella rotunda
B: paramecium polycarum (aka paramecium polycaryum)
C: paramecium bursaria
D: pseudeusemia bursadoides
E: bursera palmeri
F: pleurotus bursiformis (aka conchomyces bursiformis)
G: chlorella vulgaris var. viridis (aka chlorella vulgaris)
H: chlorella parva
I: chlorella regularis (pleurococcus regularis) (aka chlorella regularis)
J: chlorella pituita
K: None of the above. | [G; C] |
<Instruct>: Given the context 'Symbiotic Chlorella vulgaris of the ciliate Paramecium bursaria plays an important role in maintaining perialgal vacuole membrane functions.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [chlorella vulgaris; paramecium bursaria]
<Options>: A: bursera palmeri
B: chloris chloris (european greenfinch) (aka chloris chloris)
C: paramecium deuterobursaria
D: macalpinomyces bursus (tolyposporium bursum) (aka macalpinomyces bursus)
E: chlorella variabilis
F: chlorella vulgaris (chlorella vulgaris var. viridis) (aka chlorella vulgaris)
G: chloris halophila
H: diatrypella vulgaris
I: paramecium bursaria
J: cecidomyia bursaria (aka rondaniola bursaria)
K: None of the above. | [F; I] |
<Instruct>: Given the context 'Symbiotic Chlorella vulgaris of the ciliate Paramecium bursaria plays an important role in maintaining perialgal vacuole membrane functions.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [chlorella vulgaris; paramecium bursaria]
<Options>: A: bursera palmeri
B: chloris chloris (european greenfinch) (aka chloris chloris)
C: diatrypella vulgaris
D: paramecium bursaria
E: paramecium deuterobursaria
F: macalpinomyces bursus (tolyposporium bursum) (aka macalpinomyces bursus)
G: chlorella variabilis
H: chloris halophila
I: cecidomyia bursaria (aka rondaniola bursaria)
J: None of the above. | [J; D] |
<Instruct>: Given the context 'Treatment of symbiotic alga-bearing Paramecium bursaria cells with a protein synthesis inhibitor, cycloheximide, induces synchronous swelling of all perialgal vacuoles at about 24h after treatment under a constant light condition.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [paramecium bursaria]
<Options>: A: pemphigus bursarius (lettuce root aphid) (aka pemphigus bursarius)
B: paramecium polycaryum (paramecium polycarum) (aka paramecium polycaryum)
C: glyphoperidium bursa
D: platyamoeba bursella (aka vannella bursella)
E: paramecium bursaria
F: None of the above. | [E] |
<Instruct>: Given the context 'To elucidate the timing of algal degeneration, P. bursaria cells were treated with cycloheximide under a constant light condition.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. bursaria]
<Options>: A: pasteurella stomatis
B: neopuccinia bursa
C: paramecium bursaria
D: glyphoperidium bursa
E: platyamoeba bursella (aka vannella bursella)
F: None of the above. | [C] |
<Instruct>: Given the context 'The 16S rRNA gene sequence of strain F44-8(T) showed highest similarities to those of Flavobacterium frigoris LMG 21922(T)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [flavobacterium frigoris lmg 21922(t)]
<Options>: A: flavobacterium laiguense
B: flavobacterium frigidarium
C: flavobacterium frigoris
D: flavobacterium flavipigmentatum
E: flavobacterium notoginsengisoli
F: None of the above. | [C] |
<Instruct>: Given the context '(93.3 %), Flavobacterium terrae R2A1-13(T) (93.3 %) and Flavobacterium gelidilacus LMG 21477(T) (93.1 %).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [flavobacterium terrae r2a1-13(t); flavobacterium gelidilacus lmg 21477(t)]
<Options>: A: flavobacterium terrae
B: terrimonas terrae
C: flavobacterium ferrugineum (aka terrimonas ferruginea)
D: flavobacterium terrigena
E: flavobacterium filum
F: flavobacterium gelidilacus
G: flavobacterium terrisoli
H: flavobacterium laiguense
I: chryseobacterium terrae
J: flavobacterium agricola
K: None of the above. | [A; F] |
<Instruct>: Given the context '(93.3 %), Flavobacterium terrae R2A1-13(T) (93.3 %) and Flavobacterium gelidilacus LMG 21477(T) (93.1 %).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [flavobacterium terrae r2a1-13(t); flavobacterium gelidilacus lmg 21477(t)]
<Options>: A: flavobacterium fryxellicola
B: flavobacterium salilacus
C: flavobacterium spartani (aka flavobacterium tructae)
D: flavobacterium fluvii
E: flavobacterium terrae
F: flavobacterium gelidilacus
G: flavobacterium terrisoli
H: flavobacterium gelidilacus dsm 15343 (flavobacterium gelidilacus lmg 21477) (aka flavobacterium gelidilacus dsm 15343)
I: flavobacterium filum
J: flavobacterium terriphilum
K: None of the above. | [E; F] |
<Instruct>: Given the context 'Generation of Se-fortified broccoli as functional food: impact of Se fertilization on S metabolism.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [broccoli]
<Options>: A: cabbage butterfly (aka pieris brassicae)
B: ethiopian mustard (aka brassica carinata)
C: brassica rapa (field mustard) (aka brassica rapa)
D: brassica nigra (black mustard) (aka brassica nigra)
E: brassica oleracea (wild cabbage) (aka brassica oleracea)
F: None of the above. | [E] |
<Instruct>: Given the context 'Selenium (Se)-fortified broccoli (Brassica oleracea var. italica) has been proposed as a functional food for cancer prevention, based on its high glucosinolate (GSL) content and capacity for Se accumulation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [broccoli; brassica oleracea var. italica]
<Options>: A: cabbage (aka brassica oleracea var. capitata)
B: brassica oleracea (wild cabbage) (aka brassica oleracea)
C: brown mustard (aka brassica juncea)
D: brassica nigra (black mustard) (aka brassica nigra)
E: broccoli (aka brassica oleracea var. italica)
F: ethiopian mustard (aka brassica carinata)
G: brassica insularis (brassica atlantica) (aka brassica insularis)
H: brassica campestris (aka brassica rapa subsp. oleifera)
I: None of the above. | [B; B] |
<Instruct>: Given the context 'Selenium (Se)-fortified broccoli (Brassica oleracea var. italica) has been proposed as a functional food for cancer prevention, based on its high glucosinolate (GSL) content and capacity for Se accumulation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [broccoli; brassica oleracea var. italica]
<Options>: A: brassica campestris (aka brassica rapa subsp. oleifera)
B: broccoli (aka brassica oleracea var. italica)
C: cabbage (aka brassica oleracea var. capitata)
D: brassica insularis (brassica atlantica) (aka brassica insularis)
E: ethiopian mustard (aka brassica carinata)
F: brassica nigra (black mustard) (aka brassica nigra)
G: brown mustard (aka brassica juncea)
H: None of the above. | [H; H] |
<Instruct>: Given the context 'Selenium (Se)-fortified broccoli (Brassica oleracea var. italica) has been proposed as a functional food for cancer prevention, based on its high glucosinolate (GSL) content and capacity for Se accumulation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [broccoli; brassica oleracea var. italica]
<Options>: A: brassica nigra (black mustard) (aka brassica nigra)
B: ethiopian mustard (aka brassica carinata)
C: brassica erucastrum (aka raphanus raphanistrum)
D: brassica carinata (abyssinian mustard) (aka brassica carinata)
E: brassica oleracea var. napobrassica
F: indian mustard (aka brassica juncea)
G: brassica napus (rape (aka brassica napus))
H: brassica hirta (aka sinapis alba)
I: brassica oleracea (wild cabbage) (aka brassica oleracea)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'To evaluate these potentially adverse effects of Se fertilization, we performed a comprehensive study on sand-grown young broccoli plants (weekly selenate applications of 0.8 mumol plant(-1) via the root) and field-grown adult broccoli plants during head formation (single foliar selenate application: 25.3 or 253 mumol plant(-1) ).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [broccoli]
<Options>: A: brassica erucastrum (aka raphanus raphanistrum)
B: black mustard (aka brassica nigra)
C: brassica juncea (sinapis juncea) (aka brassica juncea)
D: wild cabbage (aka brassica oleracea)
E: broccoli (aka brassica oleracea var. italica)
F: None of the above. | [D] |
<Instruct>: Given the context 'We conclude that broccoli can be fertilized with Se without reduction in GSL content, even with Se accumulation exceeding the level recommended for human consumption.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [broccoli; human]
<Options>: A: pediculus humanus corporis (pediculus humanus humanus) (aka pediculus humanus corporis)
B: human louse (aka pediculus humanus)
C: carcharhinus humani
D: brassica oleracea var. italica (sprouting broccoli) (aka brassica oleracea var. italica)
E: wild cabbage (aka brassica oleracea)
F: sphaeria humana (aka sordaria humana)
G: brown mustard (aka brassica juncea)
H: cabbage butterfly (aka pieris brassicae)
I: brassica atlantica (aka brassica insularis)
J: human (aka homo sapiens)
K: None of the above. | [E; J] |
<Instruct>: Given the context 'We conclude that broccoli can be fertilized with Se without reduction in GSL content, even with Se accumulation exceeding the level recommended for human consumption.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [broccoli; human]
<Options>: A: brassica nigra (black mustard) (aka brassica nigra)
B: brassica oleracea var. italica (sprouting broccoli) (aka brassica oleracea var. italica)
C: brassica rapa (field mustard) (aka brassica rapa)
D: hominidae (great apes) (aka hominidae)
E: macrobiotus sapiens
F: brassica oleracea (wild cabbage) (aka brassica oleracea)
G: brassica hirta (aka sinapis alba)
H: pediculus humanus humanus (aka pediculus humanus corporis)
I: human (aka homo sapiens)
J: sphaeria humana (aka sordaria humana)
K: None of the above. | [F; I] |
<Instruct>: Given the context 'Factors required for the high CO2 specificity of the anaerobically induced maize GapC4 promoter in transgenic tobacco.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [maize; tobacco]
<Options>: A: nicotiana acuminata (acuminate tobacco) (aka nicotiana acuminata)
B: avenula agropyroides (aka helictochloa agropyroides)
C: american tobacco (aka nicotiana tabacum)
D: zea mays (zea mays var. japonica) (aka zea mays)
E: agrococcus citreus
F: wild tobacco (aka nicotiana rustica)
G: persian tobacco (aka nicotiana alata)
H: wood tobacco (aka nicotiana sylvestris)
I: heliothis zea (aka helicoverpa zea)
J: corn ear worm (aka helicoverpa armigera)
K: None of the above. | [D; C] |
<Instruct>: Given the context 'Factors required for the high CO2 specificity of the anaerobically induced maize GapC4 promoter in transgenic tobacco.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [maize; tobacco]
<Options>: A: nicotiana benthamiana
B: nicotiana occidentalis
C: avena agropyroides (aka helictochloa agropyroides)
D: common tobacco (aka nicotiana tabacum)
E: maize (aka zea mays subsp. mays)
F: agrococcus citreus
G: corn smut (aka mycosarcoma maydis)
H: nicotiana acuminata (acuminate tobacco) (aka nicotiana acuminata)
I: maize (aka zea mays)
J: glaucous tobacco (aka nicotiana glauca)
K: None of the above. | [I; D] |
<Instruct>: Given the context 'Strong anaerobic reporter gene activity in tobacco (Nicotiana tabacum) controlled by the glycolytic glyceraldehyde-3-phosphate dehydrogenase (GapC4) promoter from maize (Zea mays) depends on the presence of CO(2) and light.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tobacco; nicotiana tabacum; maize; zea mays]
<Options>: A: zea mexicana (aka zea mays subsp. mexicana)
B: agrococcus terreus
C: zea ramosa (aka zea mays subsp. mays)
D: nicotiana tabacum (american tobacco) (aka nicotiana tabacum)
E: nicotiana africana
F: nicotiana
G: zephyranthes challensis
H: heliothis zea (aka helicoverpa zea)
I: persian tobacco (aka nicotiana alata)
J: flowering tobacco (aka nicotiana alata)
K: corn smut (aka mycosarcoma maydis)
L: nicotiana benthamiana
M: nicotiana corymbosa
N: wild tobacco (aka nicotiana rustica)
O: avena agropyroides (aka helictochloa agropyroides)
P: zea mays (zea mays var. japonica) (aka zea mays)
Q: nicotiana occidentalis
R: agrococcus citreus
S: None of the above. | [D; D; P; P] |
<Instruct>: Given the context 'Strong anaerobic reporter gene activity in tobacco (Nicotiana tabacum) controlled by the glycolytic glyceraldehyde-3-phosphate dehydrogenase (GapC4) promoter from maize (Zea mays) depends on the presence of CO(2) and light.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tobacco; nicotiana tabacum; maize; zea mays]
<Options>: A: nicotiana benthamiana
B: corn earworm (aka helicoverpa zea)
C: agrococcus terreus
D: zeus nebulosus (aka zenopsis nebulosus)
E: zelus tetracanthus
F: common tobacco (aka nicotiana tabacum)
G: nicotiana truncata
H: tylenchus zeae
I: nicotiana corymbosa
J: zephyranthes challensis
K: maize (aka zea mays)
L: nicotiana acuminata (acuminate tobacco) (aka nicotiana acuminata)
M: avenula agropyroides (aka helictochloa agropyroides)
N: wild tobacco (aka nicotiana rustica)
O: agromyces ramosum (aka agromyces ramosus)
P: nicotiana excelsior
Q: indian tobacco (aka nicotiana alata)
R: None of the above. | [F; F; K; K] |
<Instruct>: Given the context 'Strong anaerobic reporter gene activity in tobacco (Nicotiana tabacum) controlled by the glycolytic glyceraldehyde-3-phosphate dehydrogenase (GapC4) promoter from maize (Zea mays) depends on the presence of CO(2) and light.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tobacco; nicotiana tabacum; maize; zea mays]
<Options>: A: nicotiana
B: nicotiana umbratica
C: corn earworm (aka helicoverpa zea)
D: nicotiana occidentalis
E: common tobacco (aka nicotiana tabacum)
F: nicotiana sylvestris (wood tobacco) (aka nicotiana sylvestris)
G: agromyces ramosus (agromyces ramosum) (aka agromyces ramosus)
H: avena agropyroides (aka helictochloa agropyroides)
I: zelus grassans
J: maize weevil (aka sitophilus zeamais)
K: acuminate tobacco (aka nicotiana acuminata)
L: wild tobacco (aka nicotiana rustica)
M: nicotiana corymbosa
N: zea mexicana (aka zea mays subsp. mexicana)
O: tree tobacco (aka nicotiana glauca)
P: tylenchus zeae
Q: maize (aka zea mays)
R: None of the above. | [E; E; Q; Q] |
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