instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
|---|---|---|
<Instruct>: Given the context 'Overall, of the larvae exposed to soil, 171 (20%) hosted Beauveria bassiana (Balsamo) Vuillemin (Hypocreales: Cordycipitaceae), 25 (3%) hosted Metarhizium anisopliae (Metschnikoff) Sorokin (Hypocreales: Clavicipitaceae) and 1 (0.1%) hosted lsaria (=Paecilomyces) sp. (Hypocreales: Cordycipitaceae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [beauveria bassiana; metarhizium anisopliae; lsaria (=paecilomyces) sp.]
<Options>: A: botrytis bassiana (aka beauveria bassiana)
B: metarhizium robertsii
C: bassiana
D: paecilomyces sp. nfcci 1769
E: metarhizium neoanisopliae
F: paecilomyces sp. sn-2018a
G: metarhizium anisopliae ma10
H: paecilomyces sp. xcl-2011
I: beauveria sinensis
J: beauveria velata
K: penicillium anisopliae (aka metarhizium anisopliae)
L: bassia kingiana (aka madhuca kingiana)
M: metarhizium anisopliae brip 53284
N: laetisaria sp.
O: alternaria sp. ls
P: None of the above. | [A; K; P] |
<Instruct>: Given the context 'Overall, of the larvae exposed to soil, 171 (20%) hosted Beauveria bassiana (Balsamo) Vuillemin (Hypocreales: Cordycipitaceae), 25 (3%) hosted Metarhizium anisopliae (Metschnikoff) Sorokin (Hypocreales: Clavicipitaceae) and 1 (0.1%) hosted lsaria (=Paecilomyces) sp. (Hypocreales: Cordycipitaceae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [beauveria bassiana; metarhizium anisopliae; lsaria (=paecilomyces) sp.]
<Options>: A: beauveria sinensis
B: paecilomyces lignorum
C: entomophthora anisopliae (aka metarhizium anisopliae)
D: laccaria sp.
E: metarhizium neoanisopliae
F: penicillium bassianum (aka beauveria bassiana)
G: metarhizium alvesii
H: paecilomyces sp. cs-4
I: beauveria asiatica
J: beauveria pseudobassiana
K: metarhizium atrovirens (metacordyceps atrovirens) (aka metarhizium atrovirens)
L: metarhizium anisopliae brip 53293
M: beauveria thailandica
N: sphaeroderma sp.
O: paecilomyces sp. nfcci 1769
P: None of the above. | [F; C; P] |
<Instruct>: Given the context 'B. bassiana was significantly more frequent on larvae exposed to oak forest soil.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. bassiana]
<Options>: A: caballeronia insecticola (burkholderia insecticola) (aka caballeronia insecticola)
B: monarda bradburiana
C: begonia boisiana
D: beauveria bassiana var. bassiana (aka beauveria bassiana)
E: boraria infesta
F: None of the above. | [D] |
<Instruct>: Given the context 'M. anisopliae was significantly more frequent on larvae exposed to agricultural soil.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. anisopliae]
<Options>: A: metarhizium anisopliae var. acridum (aka metarhizium acridum)
B: metarhizium anisopliae ma10
C: mycoplasma fermentans (aka mycoplasmopsis fermentans)
D: metarhizium anisopliae var. anisopliae (aka metarhizium anisopliae)
E: metarhizium neoanisopliae
F: None of the above. | [D] |
<Instruct>: Given the context 'Strains were tested for their infectivity against Cuban laurel thrips, Gynaikothrips uzeli Zimmerman (Thysanoptera: Phlaeothripidae) and the greenhouse whitefly, Trialeurodes vaporariorum (Westwood) (Hemiptera: Aleyrodidae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cuban laurel thrips; greenhouse whitefly; trialeurodes vaporariorum]
<Options>: A: thrips cerealium (aka limothrips cerealium)
B: gray-veined white butterfly (aka pieris melete)
C: cotton bollworm (aka helicoverpa armigera)
D: corn earworm (aka helicoverpa zea)
E: corn hopper (aka peregrinus maidis)
F: thrips tabaci
G: white butterfly (aka pieris brassicae)
H: xylaria vaporaria
I: botryllus tyreus
J: thrips physapus (thrips fusca) (aka thrips physapus)
K: thrips palmi
L: trialeurodes vaporariorum bunya-like virus
M: greenhouse whitefly (aka trialeurodes vaporariorum)
N: primary endosymbiont of trialeurodes vaporariorum
O: None of the above. | [O; M; M] |
<Instruct>: Given the context 'Strains were tested for their infectivity against Cuban laurel thrips, Gynaikothrips uzeli Zimmerman (Thysanoptera: Phlaeothripidae) and the greenhouse whitefly, Trialeurodes vaporariorum (Westwood) (Hemiptera: Aleyrodidae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cuban laurel thrips; greenhouse whitefly; trialeurodes vaporariorum]
<Options>: A: greenhouse whitefly (aka trialeurodes vaporariorum)
B: corn earworm (aka helicoverpa zea)
C: sheep blowfly (aka lucilia sericata)
D: corn hopper (aka peregrinus maidis)
E: toxeus maxillosus
F: tabanus virgulatus
G: thrips major
H: primary endosymbiont of trialeurodes vaporariorum
I: thrips levatus
J: agromyces albus
K: thrips ulicis (aka odontothrips ulicis)
L: botryllus tyreus
M: myrmechixenus vaporariorum
N: thrips tabaci
O: None of the above. | [O; A; A] |
<Instruct>: Given the context 'Strains were tested for their infectivity against Cuban laurel thrips, Gynaikothrips uzeli Zimmerman (Thysanoptera: Phlaeothripidae) and the greenhouse whitefly, Trialeurodes vaporariorum (Westwood) (Hemiptera: Aleyrodidae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cuban laurel thrips; greenhouse whitefly; trialeurodes vaporariorum]
<Options>: A: chinese egret (aka egretta eulophotes)
B: erysiphe tabaci (aka golovinomyces tabaci)
C: greenhouse whitefly (aka trialeurodes vaporariorum)
D: sheep blowfly (aka lucilia sericata)
E: agrotis albalis (aka rhizagrotis albalis)
F: tabanus virgulatus
G: thrips
H: antrodia odora (aka tyromyces odorus)
I: thrips palmi
J: corn hopper (aka peregrinus maidis)
K: trialeurodes variabilis (aleurodes variabilis) (aka trialeurodes variabilis)
L: tamarix arceuthoides
M: primary endosymbiont of trialeurodes vaporariorum
N: thrips decens
O: None of the above. | [O; C; C] |
<Instruct>: Given the context 'B. bassiana isolates caused the highest mortality on thrips (some causing 88% mortality after 6 days); both fungal species caused similarly high mortality levels against whiteflies (75%) after 6 days.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. bassiana]
<Options>: A: blakistonia bassi
B: beauveria bassiana (beauveria bassiana var. bassiana) (aka beauveria bassiana)
C: beauveria oryzae (aka tritirachium oryzae)
D: monarda bradburiana
E: bassia diffusa (aka chenolea diffusa)
F: None of the above. | [B] |
<Instruct>: Given the context 'Large amounts of germplasm of entomopathogenic fungi, fundamentally B. bassiana and M. anisopliae, exist in the habitats sampled; pathogenicity varied among strains, and some strains possessed significant virulence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. bassiana; m. anisopliae]
<Options>: A: bassia diffusa (aka chenolea diffusa)
B: metarhizium neoanisopliae
C: metarhizium anisopliae (metschn.) sorokin, 1883 (aka metarhizium anisopliae)
D: miconia anisotricha (melastoma anisotrichon) (aka miconia anisotricha)
E: begonia boisiana
F: monarda bradburiana
G: burkholderia insecticola (aka caballeronia insecticola)
H: mycoplasma fermentans (aka mycoplasmopsis fermentans)
I: marrubium anisodon
J: beauveria bassiana var. bassiana (aka beauveria bassiana)
K: None of the above. | [J; C] |
<Instruct>: Given the context 'Large amounts of germplasm of entomopathogenic fungi, fundamentally B. bassiana and M. anisopliae, exist in the habitats sampled; pathogenicity varied among strains, and some strains possessed significant virulence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. bassiana; m. anisopliae]
<Options>: A: bassia blackiana (aka sclerolaena blackiana)
B: botrytis bassiana (aka beauveria bassiana)
C: metarhizium majus (metarhizium anisopliae var. majus) (aka metarhizium majus)
D: bassia iranica (aka bassia odontoptera)
E: metarhizium anisopliae brip 53293
F: beauveria pseudobassiana
G: mycoplasma fermentans (aka mycoplasmopsis fermentans)
H: penicillium anisopliae (aka metarhizium anisopliae)
I: metarhizium anisopliae ma10
J: beauveria bassiana d1-5
K: None of the above. | [B; H] |
<Instruct>: Given the context 'Large amounts of germplasm of entomopathogenic fungi, fundamentally B. bassiana and M. anisopliae, exist in the habitats sampled; pathogenicity varied among strains, and some strains possessed significant virulence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. bassiana; m. anisopliae]
<Options>: A: beauveria bassiana d1-5
B: metarhizium anisopliae brip 53293
C: mycoplasma fermentans (aka mycoplasmopsis fermentans)
D: metarhizium anisopliae ma10
E: bassia blackiana (aka sclerolaena blackiana)
F: metarhizium majus (metarhizium anisopliae var. majus) (aka metarhizium majus)
G: bassia iranica (aka bassia odontoptera)
H: botrytis bassiana (aka beauveria bassiana)
I: beauveria pseudobassiana
J: None of the above. | [H; J] |
<Instruct>: Given the context 'Transcript analysis and comparative evaluation of shaker and slowmo gene homologues from the European corn borer, Ostrinia nubilalis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [european corn borer; ostrinia nubilalis]
<Options>: A: astatotilapia nubila (aka haplochromis nubilus)
B: tachypeza nubila
C: bryophryne nubilosus
D: beet armyworm (aka spodoptera exigua)
E: bombus terricola
F: european corn borer (aka ostrinia nubilalis)
G: trichia nubila
H: corn earworm (aka helicoverpa zea)
I: sugarcane borer (aka diatraea saccharalis)
J: None of the above. | [F; F] |
<Instruct>: Given the context 'Transcript analysis and comparative evaluation of shaker and slowmo gene homologues from the European corn borer, Ostrinia nubilalis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [european corn borer; ostrinia nubilalis]
<Options>: A: parascutigera nubila
B: oxytenis nubila
C: lesser grain borer (aka rhyzopertha dominica)
D: southwestern corn borer (aka diatraea grandiosella)
E: agrococcus citreus
F: schistostege nubilaria
G: english grain aphid (aka sitobion avenae)
H: bryophryne nubilosus
I: european corn borer (aka ostrinia nubilalis)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'Homologues of the Drosophila behaviour-linked genes shaker (shkr) and slowmo (slmo) were identified from Ostrinia nubilalis (Lepidoptera: Crambidae).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ostrinia nubilalis]
<Options>: A: schinia nubila
B: stericta nubilalis (aka salma nubilalis)
C: european corn borer (aka ostrinia nubilalis)
D: tortrix nubilana (aka neosphaleroptera nubilana)
E: parascutigera nubila
F: None of the above. | [C] |
<Instruct>: Given the context 'Marek's disease virus type 1 microRNA miR-M3 suppresses cisplatin-induced apoptosis by targeting Smad2 of the transforming growth factor beta signal pathway.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [marek's disease virus type 1]
<Options>: A: marek's disease virus mdv1 (aka gallid alphaherpesvirus 2)
B: marek's disease virus type 2 (aka gallid alphaherpesvirus 3)
C: marek's disease-like viruses (aka mardivirus)
D: marek's disease gammaherpesvirus mkt-1
E: gallid herpesvirus 1 (serotype 2) (aka marek's disease virus serotype 2 mdv2)
F: None of the above. | [A] |
<Instruct>: Given the context 'Viruses cause about 15% of the cancers that are still the leading causes of human mortality.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: hominidae (great apes) (aka hominidae)
B: carcharhinus humani
C: macrobiotus sapiens
D: homo (humans) (aka homo)
E: human (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'The present study has attempted to investigate the effects of the microRNAs (miRNAs) encoded by Marek's disease virus 1 (MDV1), a chicken herpesvirus causing acute T-cell lymphomas and solid visceral tumors in chickens, on anti-cancer drug-induced apoptosis and identify the targets of the miRNAs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [marek's disease virus 1; mdv1; chicken; chickens]
<Options>: A: maryland virus 1 (aka maryland calicivirus 1)
B: common turkey (aka meleagris gallopavo)
C: grey junglefowl (aka gallus sonneratii)
D: gallus gallus gallus (gallus gallus philippensis) (aka gallus gallus gallus)
E: gallus sonneratii (gray junglefowl) (aka gallus sonneratii)
F: gallid herpesvirus 1 (serotype 2) (aka marek's disease virus serotype 2 mdv2)
G: marr virus
H: marek's disease virus type 2 (aka gallid alphaherpesvirus 3)
I: green junglefowl (aka gallus varius)
J: marek disease virus type 1 (aka gallid alphaherpesvirus 2)
K: murine adenovirus type 1 mav1 (aka murine adenovirus 1)
L: chickens (aka gallus gallus)
M: marek's disease-like viruses (aka mardivirus)
N: marek's disease gammaherpesvirus mkt-1
O: gallacoccus
P: marten adenovirus type 1
Q: gallus
R: arilus gallus
S: None of the above. | [J; J; L; L] |
<Instruct>: Given the context 'The present study has attempted to investigate the effects of the microRNAs (miRNAs) encoded by Marek's disease virus 1 (MDV1), a chicken herpesvirus causing acute T-cell lymphomas and solid visceral tumors in chickens, on anti-cancer drug-induced apoptosis and identify the targets of the miRNAs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [marek's disease virus 1; mdv1; chicken; chickens]
<Options>: A: medway virus
B: gallacoccus
C: chicken (aka gallus gallus)
D: turkey (aka meleagris gallopavo)
E: landfowls (aka galliformes)
F: mardivirus (marek's disease-like viruses) (aka mardivirus)
G: green junglefowl (aka gallus varius)
H: middleburg virus (aka middelburg virus)
I: murine adenovirus 1 (murine adenovirus type 1 mav1) (aka murine adenovirus 1)
J: gallus
K: marek's disease virus serotype 1 mdv-1 (aka gallid alphaherpesvirus 2)
L: marek's disease herpesvirus 2 (aka gallid alphaherpesvirus 3)
M: marek's disease gammaherpesvirus mkt-1
N: maryland virus 1 (aka maryland calicivirus 1)
O: gallid herpesvirus 1 (serotype 2) (aka marek's disease virus serotype 2 mdv2)
P: gallasellus
Q: None of the above. | [K; K; C; C] |
<Instruct>: Given the context 'The present study has attempted to investigate the effects of the microRNAs (miRNAs) encoded by Marek's disease virus 1 (MDV1), a chicken herpesvirus causing acute T-cell lymphomas and solid visceral tumors in chickens, on anti-cancer drug-induced apoptosis and identify the targets of the miRNAs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [marek's disease virus 1; mdv1; chicken; chickens]
<Options>: A: gallacoccus
B: gallid herpesvirus 1 (serotype 2) (aka marek's disease virus serotype 2 mdv2)
C: marek's disease gammaherpesvirus mkt-1
D: marek's disease virus type 2 (aka gallid alphaherpesvirus 3)
E: medway virus
F: landfowls (aka galliformes)
G: gallus lafayettii (ceylon junglefowl) (aka gallus lafayettii)
H: gallus gallus domesticus (aka gallus gallus)
I: mardivirus (marek's disease-like viruses) (aka mardivirus)
J: marek's disease virus (aka gallid alphaherpesvirus 2)
K: green junglefowl (aka gallus varius)
L: gallus gallus gallus (gallus gallus philippensis) (aka gallus gallus gallus)
M: gray junglefowl (aka gallus sonneratii)
N: gallus sonneratii (gray junglefowl) (aka gallus sonneratii)
O: middelburg virus (middleburg virus) (aka middelburg virus)
P: marten adenovirus type 1
Q: mdv1 (aka maryland calicivirus 1) (aka maryland calicivirus 1)
R: None of the above. | [J; J; H; H] |
<Instruct>: Given the context 'The present study has attempted to investigate the effects of the microRNAs (miRNAs) encoded by Marek's disease virus 1 (MDV1), a chicken herpesvirus causing acute T-cell lymphomas and solid visceral tumors in chickens, on anti-cancer drug-induced apoptosis and identify the targets of the miRNAs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [marek's disease virus 1; mdv1; chicken; chickens]
<Options>: A: gallus
B: middleburg virus (aka middelburg virus)
C: human mastadenovirus 1 (aka human adenovirus 1)
D: arilus gallus
E: gallasellus
F: gallorhynchus
G: gallus gallus (gallus gallus domesticus) (aka gallus gallus)
H: medway virus
I: gallus lafayettii (ceylon junglefowl) (aka gallus lafayettii)
J: mardivirus (marek's disease-like viruses) (aka mardivirus)
K: meleagris gallopavo (common turkey) (aka meleagris gallopavo)
L: gallid herpesvirus 1 (serotype 2) (aka marek's disease virus serotype 2 mdv2)
M: marek disease virus type 1 (aka gallid alphaherpesvirus 2)
N: gallus gallus gallus (gallus gallus philippensis) (aka gallus gallus gallus)
O: marek's disease gammaherpesvirus mkt-1
P: mav-1 (aka murine adenovirus 1)
Q: gallacoccus
R: marek's disease herpesvirus 2 (aka gallid alphaherpesvirus 3)
S: None of the above. | [M; M; G; G] |
<Instruct>: Given the context 'The results showed that of the total 14 miRNAs encoded by MDV1, MDV1-miR-M3 significantly promoted cell survival under treatment with cisplatin, a widely used chemotherapy drug.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mdv1]
<Options>: A: marr virus
B: marek's disease virus (mdv) (aka gallid alphaherpesvirus 2)
C: mav-1 (aka murine adenovirus 1)
D: medway virus
E: middleburg virus (aka middelburg virus)
F: None of the above. | [B] |
<Instruct>: Given the context 'MDV1-miR-M3 suppressed cisplatin-induced apoptosis by directly downregulating expression at the protein but not the mRNA level of Smad2, a critical component in the transforming growth factor Beta signal pathway.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mdv1]
<Options>: A: marten adenovirus type 1
B: mdv1 (aka gallid alphaherpesvirus 2) (aka gallid alphaherpesvirus 2)
C: marr virus
D: maryland virus 1 (aka maryland calicivirus 1)
E: human mastadenovirus 1 (aka human adenovirus 1)
F: None of the above. | [B] |
<Instruct>: Given the context 'Differentially expressed genes in silkworm cell cultures in response to infection by Wolbachia and Cardinium endosymbionts.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [silkworm]
<Options>: A: fall armyworm (aka spodoptera frugiperda)
B: bombus morio (apis morio) (aka bombus morio)
C: silkworm moths (aka bombycidae)
D: domestic silkworm (aka bombyx mori)
E: bombus hortorum (apis hortorum) (aka bombus hortorum)
F: None of the above. | [D] |
<Instruct>: Given the context 'Here we studied differentially expressed genes in Wolbachia- and Cardinium-infected Bm-aff3 silkworm cells using a silkworm microarray.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [silkworm]
<Options>: A: silkworm moths (aka bombycidae)
B: apis hortorum (aka bombus hortorum)
C: bombyx catax (aka eriogaster catax)
D: beet armyworm (aka spodoptera exigua)
E: bombyx mori (domestic silkworm) (aka bombyx mori)
F: None of the above. | [E] |
<Instruct>: Given the context 'We present the characterization of the PEVK domain in two dragonflies and in human lice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human lice]
<Options>: A: human head lice (aka pediculus humanus capitis)
B: human lice (aka pediculus humanus)
C: chewing lice (aka ischnocera)
D: ungulate lice (aka haematopinidae)
E: body lice (aka pediculidae)
F: None of the above. | [B] |
<Instruct>: Given the context 'T cell-mediated protection against lethal 2009 pandemic H1N1 influenza virus infection in a mouse model.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lethal 2009 pandemic h1n1 influenza virus]
<Options>: A: influenza a virus (a/england/742/2009(h1n1))
B: influenza a virus (a/england/755/2009(h1n1))
C: influenza a virus (a/netherlands/1084/2009(h1n1))
D: influenza b virus (b/california/11/2015)
E: influenza a virus (human influenza a virus) (aka influenza a virus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Genetic mutation and reassortment of influenza virus gene segments, in particular those of hemagglutinin (HA) and neuraminidase (NA), that lead to antigenic drift and shift are the major strategies for influenza virus to escape preexisting immunity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [influenza virus]
<Options>: A: influenza virus (aka unidentified influenza virus)
B: equine influenza virus
C: alphainfluenzavirus (influenzavirus a) (aka alphainfluenzavirus)
D: swine influenza virus
E: influenza virus type b (aka influenza b virus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Genetic mutation and reassortment of influenza virus gene segments, in particular those of hemagglutinin (HA) and neuraminidase (NA), that lead to antigenic drift and shift are the major strategies for influenza virus to escape preexisting immunity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [influenza virus]
<Options>: A: equine influenza virus
B: influenza virus type b (aka influenza b virus)
C: alphainfluenzavirus (influenzavirus a) (aka alphainfluenzavirus)
D: swine influenza virus
E: None of the above. | [E] |
<Instruct>: Given the context 'The most recent example of such phenomena is the first pandemic of H1N1 influenza of the 21st century, which started in 2009.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1n1 influenza]
<Options>: A: influenzavirus a (aka alphainfluenzavirus)
B: influenza b virus (influenza virus type b) (aka influenza b virus)
C: h1n1 swine influenza virus
D: influenza a virus (h1n1) (unidentified influenza a virus (h1n1)) (aka influenza a virus (h1n1))
E: human influenza a virus (aka influenza a virus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Cross-reactive antibodies raised against H1N1 viruses circulating before 1930 show protective activity against the 2009 pandemic virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1n1 viruses; 2009 pandemic virus]
<Options>: A: influenza virus (aka unidentified influenza virus)
B: influenza b virus (b/california/11/2011)
C: swine influenza virus
D: influenza a virus (a/england/759/2009(h1n1))
E: influenzavirus b (aka betainfluenzavirus)
F: influenzavirus c (aka gammainfluenzavirus)
G: h1n1 swine influenza virus
H: influenza a virus (a/singapore/07/2009(h1n1))
I: influenza virus type a (aka influenza a virus)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'Cross-reactive antibodies raised against H1N1 viruses circulating before 1930 show protective activity against the 2009 pandemic virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1n1 viruses; 2009 pandemic virus]
<Options>: A: h1n1 swine influenza virus
B: influenzavirus c (aka gammainfluenzavirus)
C: influenza a virus (a/california/7/2009(h1n1))
D: influenzavirus b (aka betainfluenzavirus)
E: fluav (aka influenza a virus)
F: influenza b virus (b/california/01/2009)
G: influenza a virus (a/philippines/2009/2009(h1n1))
H: influenza b virus (influenza virus type b) (aka influenza b virus)
I: None of the above. | [E; E] |
<Instruct>: Given the context 'To explore the protection mechanisms in vivo, we primed mice with H1 and H3 influenza virus isolates and rechallenged them with a virus derived from the 2009 H1N1 A/CA/04/09 virus, named CA/E3/09.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1; h3 influenza virus; 2009 h1n1 a/ca/04/09 virus]
<Options>: A: influenza a virus (a/california/09/2010(h1n1))
B: human influenza a virus (aka influenza a virus)
C: influenza a virus (a/california/04/2009(h1n1))
D: h11n5 subtype
E: unidentified influenza virus (avian influenza virus) (aka unidentified influenza virus)
F: h11n4 subtype
G: h1n2 subtype (h1n2 (aka h1n2 subtype))
H: swine influenza virus
I: influenza b virus (influenza virus type b) (aka influenza b virus)
J: influenza b virus (b/california/01/2009)
K: influenza a virus (a/california/07-00014/2009(h1n1))
L: h10n5 subtype
M: h1n3 subtype
N: influenza c virus (influenza virus type c) (aka influenza c virus)
O: influenza a virus (a/california/11/2009(h1n1))
P: None of the above. | [P; B; B] |
<Instruct>: Given the context 'To explore the protection mechanisms in vivo, we primed mice with H1 and H3 influenza virus isolates and rechallenged them with a virus derived from the 2009 H1N1 A/CA/04/09 virus, named CA/E3/09.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1; h3 influenza virus; 2009 h1n1 a/ca/04/09 virus]
<Options>: A: influenza virus type c (aka influenza c virus)
B: influenza a virus (a/california/07-00019/2009(h1n1))
C: influenza a virus (a/california/05/2009(h1n1))
D: avian influenza virus (aka unidentified influenza virus)
E: h11n5 subtype
F: h11n7 subtype
G: influenza a virus (a/china)
H: influenzavirus c (aka gammainfluenzavirus)
I: h13n1 subtype
J: influenza a virus (a/california/ma_07/2009(h1n1))
K: influenza virus type a (aka influenza a virus)
L: influenza a virus (a/colorado/07/2009(h1n1))
M: influenza a virus (a/california/09/2010(h1n1))
N: h1n6 subtype
O: h1n9 subtype
P: None of the above. | [P; K; K] |
<Instruct>: Given the context 'To explore the protection mechanisms in vivo, we primed mice with H1 and H3 influenza virus isolates and rechallenged them with a virus derived from the 2009 H1N1 A/CA/04/09 virus, named CA/E3/09.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1; h3 influenza virus; 2009 h1n1 a/ca/04/09 virus]
<Options>: A: h11n2 subtype
B: influenza a virus (a/california/04/2009(h1n1))
C: h11n3 subtype
D: influenza a virus (a/california/11/2009(h1n1))
E: h3n8 equine influenza virus (aka equine influenza virus h3n8)
F: influenza a virus (a/california/07/2009(h1n1))
G: h1n1 swine influenza virus
H: influenza a virus (a/australia/4/2009(h1n1))
I: h1n8 subtype
J: h1n6 subtype
K: h10n4 subtype
L: influenza a virus (human influenza a virus) (aka influenza a virus)
M: influenza a virus (a/california/ma-07/2009(h1n1))
N: influenza virus (aka unidentified influenza virus)
O: influenzavirus c (aka gammainfluenzavirus)
P: None of the above. | [P; L; L] |
<Instruct>: Given the context 'We found that priming with influenza viruses of both H1 and H3 homo- and heterosubtypes protected against lethal CA/E3/09 virus challenge.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h1]
<Options>: A: h11n7 subtype
B: h11n4 subtype
C: h11n2 subtype
D: h1n5 subtype
E: h1n3 subtype
F: None of the above. | [F] |
<Instruct>: Given the context 'Taken together, these results indicate that cross-reactive T cells established after initial priming with distally related viruses can be a vital component for prevention of disease and control of pandemic H1N1 influenza virus infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pandemic h1n1 influenza virus]
<Options>: A: influenza c virus (influenza virus type c) (aka influenza c virus)
B: influenza b virus (b/california/01/2015)
C: fluav (aka influenza a virus)
D: influenza a virus (a/california/07/2016(h1n1))
E: influenza a virus (a/china)
F: None of the above. | [C] |
<Instruct>: Given the context 'Dermamoeba algensis n. sp. (Amoebozoa, Dermamoebidae): an algivorous lobose amoeba with complex cell coat and unusual feeding mode.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dermamoeba algensis n. sp.]
<Options>: A: ectoedemia algeriensis
B: entamoeba dispar
C: dientamoeba fragilis
D: entamoeba sp. do
E: dermamoeba algensis
F: None of the above. | [E] |
<Instruct>: Given the context 'In this paper we describe a third species of this genus, D. algensis n. sp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [d. algensis n. sp.]
<Options>: A: daphnia turbinata
B: dientamoeba fragilis
C: dermamoeba algensis
D: tenthredo algoviensis
E: daphnia muddensis
F: None of the above. | [C] |
<Instruct>: Given the context 'Accordingly, D. algensis has a wide range of salinity tolerance.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [d. algensis]
<Options>: A: drepanepteryx algida
B: tenthredo algoviensis
C: hedysarum algidum
D: dictyamoeba vorax
E: dermamoeba algensis
F: None of the above. | [E] |
<Instruct>: Given the context 'Clinical management of Staphylococcus aureus bacteraemia.
Staphylococcus aureus bacteraemia is one of the most common serious bacterial infections worldwide.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [staphylococcus aureus]
<Options>: A: streptomyces aureus
B: staphylococcus haemolyticus
C: aurococcus (aka staphylococcus)
D: 'staphylococcus faecalis' (aka staphylococcus faecalis)
E: staphylococcus aureus (staphylococcus aureus subsp. anaerobius) (aka staphylococcus aureus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Clinical management of Staphylococcus aureus bacteraemia.
Staphylococcus aureus bacteraemia is one of the most common serious bacterial infections worldwide.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [staphylococcus aureus]
<Options>: A: 'staphylococcus faecalis' (aka staphylococcus faecalis)
B: staphylococcus haemolyticus
C: streptomyces aureus
D: aurococcus (aka staphylococcus)
E: None of the above. | [E] |
<Instruct>: Given the context 'To date, fewer than 1500 patients with S aureus bacteraemia have been recruited to 16 controlled trials of antimicrobial therapy.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s aureus]
<Options>: A: staphylococcus epidermidis (staphylococcus epidermidis albus) (aka staphylococcus epidermidis)
B: staphylococcus equorum
C: aurococcus (aka staphylococcus)
D: staphylococcus pyogenes aureus (aka staphylococcus aureus)
E: staphylococcus aureus strain pa (aka staphylococcus aureus pa)
F: None of the above. | [D] |
<Instruct>: Given the context 'Here, we propose and review ten unanswered clinical questions commonly posed by those managing S aureus bacteraemia.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s aureus]
<Options>: A: staphylococcus aureus strain pa (aka staphylococcus aureus pa)
B: staphylococcus faecalis ('staphylococcus faecalis') (aka staphylococcus faecalis)
C: staphylococcus pyogenes aureus (aka staphylococcus aureus)
D: staphylococcus equorum
E: staphylococcus aureus a8799
F: None of the above. | [C] |
<Instruct>: Given the context 'Our findings define the major areas of uncertainty in the management of S aureus bacteraemia and highlight just two key principles.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s aureus]
<Options>: A: arthrobacter aureus ('arthrobacter aureus') (aka arthrobacter aureus)
B: staphlococcus pyogenes citreus (aka staphylococcus aureus)
C: staphylococcus (aurococcus) (aka staphylococcus)
D: staphylococcus haemolyticus
E: agaribacillus aureus
F: None of the above. | [B] |
<Instruct>: Given the context 'Beyond this, the best drugs, dose, mode of delivery, and duration of therapy are uncertain, a situation compounded by emerging S aureus strains that are resistant to old and new antibiotics.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s aureus]
<Options>: A: staphylococcus epidermidis albus (aka staphylococcus epidermidis)
B: streptomyces aureus
C: staphylococcus aureus (staphylococcus aureus subsp. anaerobius) (aka staphylococcus aureus)
D: staphylococcus equorum
E: staphylococcus aureus a8799
F: None of the above. | [C] |
<Instruct>: Given the context 'Key data gaps include incidence and case-fatality ratios for all ages, the contribution of influenza towards admission of adults to hospital for ARI, representative seasonality data, economic burden, and the interaction of influenza with prevalent disorders in Africa, such as malaria, HIV, and malnutrition.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv]
<Options>: A: hiv (aka human immunodeficiency virus 3) (aka human immunodeficiency virus 3)
B: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
C: human immunodeficiency virus 1 (human immunodeficiency virus type 1, hiv-1) (aka human immunodeficiency virus 1)
D: aids virus (aka human immunodeficiency virus 2)
E: None of the above. | [B] |
<Instruct>: Given the context 'Association of TRIM22 with the type 1 interferon response and viral control during primary HIV-1 infection.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: human immunodeficiency virus type 1 (kb-1 isolate)
B: aids virus (aka human immunodeficiency virus)
C: human immunodeficiency virus type 1 hiv1 (aka human immunodeficiency virus 1)
D: None of the above. | [C] |
<Instruct>: Given the context 'Type 1 interferons (IFNs) induce the expression of the tripartite interaction motif (TRIM) family of E3 ligases, but the contribution of these antiviral factors to HIV pathogenesis is not completely understood.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv]
<Options>: A: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
B: human immunodeficiency virus type i hiv-1 (aka human immunodeficiency virus 1)
C: aids virus (aka human immunodeficiency virus 2)
D: human immunodeficiency virus 3 (hiv (aka human immunodeficiency virus 3))
E: None of the above. | [B] |
<Instruct>: Given the context 'We hypothesized that the increased expression of select type 1 IFN and TRIM isoforms is associated with a significantly lower likelihood of HIV-1 acquisition and viral control during primary HIV-1 infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: human immunodeficiency virus type 1 (kb-1 isolate)
B: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
C: human immunodeficiency virus type 1 hiv 1 (aka human immunodeficiency virus 1)
D: None of the above. | [C] |
<Instruct>: Given the context 'We measured IFN-alpha, IFN-Beta, myxovirus resistance protein A (MxA), human TRIM5alpha (huTRIM5alpha), and TRIM22 mRNA levels in peripheral blood mononuclear cells (PBMCs) of high-risk, HIV-1-uninfected participants and HIV-1-positive study participants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; hiv-1]
<Options>: A: human immunodeficiency virus type 1 (kb-1 isolate)
B: human (aka homo sapiens)
C: human immunodeficiency virus type 1, hiv-1 (aka human immunodeficiency virus 1)
D: sphaeria humana (aka sordaria humana)
E: cardium humanum (aka glossus humanus)
F: great apes (aka hominidae)
G: human louse (aka pediculus humanus)
H: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
I: None of the above. | [B; C] |
<Instruct>: Given the context 'We measured IFN-alpha, IFN-Beta, myxovirus resistance protein A (MxA), human TRIM5alpha (huTRIM5alpha), and TRIM22 mRNA levels in peripheral blood mononuclear cells (PBMCs) of high-risk, HIV-1-uninfected participants and HIV-1-positive study participants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; hiv-1]
<Options>: A: human immunodeficiency virus type 1 (kb-1 isolate)
B: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
C: sphaeria humana (aka sordaria humana)
D: human louse (aka pediculus humanus)
E: cardium humanum (aka glossus humanus)
F: great apes (aka hominidae)
G: human immunodeficiency virus type 1, hiv-1 (aka human immunodeficiency virus 1)
H: None of the above. | [H; G] |
<Instruct>: Given the context 'We measured IFN-alpha, IFN-Beta, myxovirus resistance protein A (MxA), human TRIM5alpha (huTRIM5alpha), and TRIM22 mRNA levels in peripheral blood mononuclear cells (PBMCs) of high-risk, HIV-1-uninfected participants and HIV-1-positive study participants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; hiv-1]
<Options>: A: gymnopleurus humanus
B: human immunodeficiency virus type 1 (kb-1 isolate)
C: macrobiotus sapiens
D: human louse (aka pediculus humanus)
E: sphaeria humana (aka sordaria humana)
F: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
G: lav-1 (aka human immunodeficiency virus 1)
H: homo sapiens (human) (aka homo sapiens)
I: None of the above. | [H; G] |
<Instruct>: Given the context 'HIV-1-positive participants had higher levels of IFN-Beta (P = 0.0005), MxA (P = 0.007), and TRIM22 (P = 0.01) and lower levels of huTRIM5alpha (P < 0.001) than did HIV-1-negative participants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: aids virus (aka human immunodeficiency virus)
B: human immunodeficiency virus type 1 (kb-1 isolate)
C: human immunodeficiency virus-1 hiv-1 (aka human immunodeficiency virus 1)
D: None of the above. | [C] |
<Instruct>: Given the context 'In vitro studies revealed that HIV infection induced TRIM22 expression in PBMCs obtained from HIV-negative donors.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv]
<Options>: A: aids virus (aka human immunodeficiency virus)
B: human immunodeficiency virus 3 (hiv (aka human immunodeficiency virus 3))
C: aids virus (aka human immunodeficiency virus 2)
D: human immunodeficiency virus type-1 hiv-1 (aka human immunodeficiency virus 1)
E: None of the above. | [D] |
<Instruct>: Given the context 'Stable TRIM22 knockdown resulted in increased HIV-1 particle release and replication in Jurkat reporter cells.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
B: human immunodeficiency virus type 1 (kb-1 isolate)
C: hiv (aka human immunodeficiency virus 1) (aka human immunodeficiency virus 1)
D: None of the above. | [C] |
<Instruct>: Given the context 'Interbacterial macromolecular transfer by the Campylobacter fetus subsp. venerealis type IV secretion system.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [campylobacter fetus subsp. venerealis]
<Options>: A: campylobacter fetus subsp. venerealis cfvi92/203
B: campylobacter fetus subsp. venerealis cfvi97/532
C: campylobacter fetus subsp. jejuni (aka campylobacter jejuni)
D: campylobacter ovis (aka campylobacter vicugnae)
E: vibrio fetus (aka campylobacter fetus)
F: None of the above. | [E] |
<Instruct>: Given the context 'We report here the first demonstration of intra- and interspecies conjugative plasmid DNA transfer for Campylobacter fetus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [campylobacter fetus]
<Options>: A: campylobacter jejuni 10187
B: campylobacter fetus (spirillum fetus) (aka campylobacter fetus)
C: campylobacter concisus
D: campylobacter avium
E: campylobacter fetus fetus (aka campylobacter fetus subsp. fetus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Gene regions carried by a Campylobacter coli plasmid were identified that are sufficient for conjugative mobilization to Escherichia coli and C. fetus recipients.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [campylobacter coli; escherichia coli; c. fetus]
<Options>: A: cryptorhynchus gravis (aka sternochetus gravis)
B: campylobacter jejuni-like bacterium
C: escherichia/shigella coli (aka escherichia coli)
D: enterobacter aerogenes (aka klebsiella aerogenes)
E: e. coli (aka escherichia coli)
F: escherichia coli 99.1793
G: campylobacter
H: campylobacter anatolicus
I: campylobacter hyoilei (aka campylobacter coli)
J: spirillum fetus (aka campylobacter fetus)
K: cryptosporidium cuniculus
L: cryptosporidium bovis
M: entamoeba coli
N: cryptosporidium felis
O: escherichia coli c
P: None of the above. | [I; C; J] |
<Instruct>: Given the context 'Gene regions carried by a Campylobacter coli plasmid were identified that are sufficient for conjugative mobilization to Escherichia coli and C. fetus recipients.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [campylobacter coli; escherichia coli; c. fetus]
<Options>: A: cryptosporidium felis
B: campylobacter hyoilei (aka campylobacter coli)
C: escherichia/shigella coli (aka escherichia coli)
D: escherichia coli c
E: e. coli (aka escherichia coli)
F: entamoeba coli
G: cryptorhynchus gravis (aka sternochetus gravis)
H: campylobacter jejuni-like bacterium
I: campylobacter anatolicus
J: cryptosporidium bovis
K: enterobacter aerogenes (aka klebsiella aerogenes)
L: cryptosporidium cuniculus
M: campylobacter
N: escherichia coli 99.1793
O: None of the above. | [B; C; O] |
<Instruct>: Given the context 'Gene regions carried by a Campylobacter coli plasmid were identified that are sufficient for conjugative mobilization to Escherichia coli and C. fetus recipients.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [campylobacter coli; escherichia coli; c. fetus]
<Options>: A: escherichia coli 99.1762
B: campylobacter suis
C: escherichia coli 9.1796
D: campylobacter coli 1957
E: cryptosporidium felis
F: cytauxzoon felis
G: campylobacter concisus
H: spirillum fetus (aka campylobacter fetus)
I: boletus favus (aka coriolopsis gallica)
J: escherichia coli 99.1793
K: bacterium coli (aka escherichia coli)
L: campylobacter hyoilei (aka campylobacter coli)
M: vibrio coli (aka campylobacter coli)
N: chordifex abortivus (restio abortivus) (aka chordifex abortivus)
O: campylobacter jejuni-like bacterium
P: None of the above. | [L; K; H] |
<Instruct>: Given the context 'Gene regions carried by a Campylobacter coli plasmid were identified that are sufficient for conjugative mobilization to Escherichia coli and C. fetus recipients.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [campylobacter coli; escherichia coli; c. fetus]
<Options>: A: spirillum fetus (aka campylobacter fetus)
B: campylobacter cuniculorum
C: 'escherichia faecalis' (aka escherichia faecalis)
D: bacillus coli (aka escherichia coli)
E: escherichia coli c
F: campylobacter fetus fetus (aka campylobacter fetus subsp. fetus)
G: campylobacter jejuni-like bacterium
H: e. coli (aka escherichia coli)
I: vibrio coli (aka campylobacter coli)
J: escherichia
K: escherichia coli nissle 1917 (escherichia coli strain nissle 1917) (aka escherichia coli nissle 1917)
L: chorioptes ovis (aka chorioptes bovis)
M: afrocloetus
N: campylobacter ornithocola
O: cryptosporidium cuniculus
P: None of the above. | [I; D; A] |
<Instruct>: Given the context 'Efficient DNA transfer involves the virB9 and virD4 genes of the type IV bacterial secretion system encoded by a pathogenicity island of C. fetus subsp. venerealis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. fetus subsp. venerealis]
<Options>: A: campylobacter fetus subsp. venerealis cfvi02/298
B: vibrio fetus (aka campylobacter fetus)
C: campylobacter fetus subsp. venerealis ccug 33872
D: campylobacter fetus subsp. venerealis cfvb10
E: campylobacter fetus subsp. venerealis cfvi03/596
F: None of the above. | [B] |
<Instruct>: Given the context 'Complementation of these phenotypes from expression constructions based on the promoter of the C. fetus surface antigen protein (sap) locus was temperature dependent, and a temperature regulation of the sap promoter was subsequently confirmed under laboratory conditions.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. fetus]
<Options>: A: campylobacter ovis (aka campylobacter vicugnae)
B: cryptosporidium bovis
C: campylobacter felis
D: cryptosporidium felis
E: campylobacter fetus (spirillum fetus) (aka campylobacter fetus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Gene transfer was sensitive to surface or entry exclusion functions in potential recipient cells carrying IncPalpha plasmid RP4 implying functional relatedness to C. fetus proteins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. fetus]
<Options>: A: cixius cunicularius (cicada cunicularius) (aka cixius cunicularius)
B: chordifex abortivus (restio abortivus) (aka chordifex abortivus)
C: vibrio fetus (aka campylobacter fetus)
D: chamaeleo bifidus (aka furcifer bifidus)
E: campylobacter fetus fetus (aka campylobacter fetus subsp. fetus)
F: None of the above. | [C] |
<Instruct>: Given the context 'The virB/virD4 locus is also known to be involved in bacterial invasion and killing of cultured human cells in vitro.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: pediculus humanus humanus (aka pediculus humanus corporis)
B: homo sapiens (human) (aka homo sapiens)
C: carcharhinus humani
D: hominidae (great apes) (aka hominidae)
E: sphaeria humana (aka sordaria humana)
F: None of the above. | [B] |
<Instruct>: Given the context 'The virB/virD4 locus is also known to be involved in bacterial invasion and killing of cultured human cells in vitro.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: sphaeria humana (aka sordaria humana)
B: hominidae (great apes) (aka hominidae)
C: carcharhinus humani
D: pediculus humanus humanus (aka pediculus humanus corporis)
E: None of the above. | [E] |
<Instruct>: Given the context 'Two putative effector proteins carrying an FIC domain conserved in a few bacterial type III and type IV secreted proteins of pathogens were analyzed for secretion by the C. fetus or heterologous conjugative systems.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. fetus]
<Options>: A: campylobacter fetus (spirillum fetus) (aka campylobacter fetus)
B: campylobacter felis
C: boletus favus (aka coriolopsis gallica)
D: cryptorhynchus gravis (aka sternochetus gravis)
E: cryptosporidium cuniculus
F: None of the above. | [A] |
<Instruct>: Given the context 'Serinicoccus profundi sp. nov., an actinomycete isolated from deep-sea sediment, and emended description of the genus Serinicoccus.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [serinicoccus profundi sp. nov.]
<Options>: A: sphingomonas profundi
B: salenocidaris profundi (salenia profundi) (aka salenocidaris profundi)
C: serinicoccus sp. 13-12-4
D: serinicoccus sediminis
E: serinicoccus profundi
F: None of the above. | [E] |
<Instruct>: Given the context 'A Gram-reaction-positive bacterial strain of the genus Serinicoccus, designated MCCC 1A05965(T), was isolated from a deep-sea (5368 m) sediment of the Indian Ocean.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mccc 1a05965]
<Options>: A: uncultured prochlorococcus marinus clone hot0m-5c8
B: pasteurella aerogenes mccm 01551
C: uncultured organism meddcm-oct-s11-c492
D: uncultured organism meddcm-oct-s08-c695
E: uncultured micrococcus mc5
F: None of the above. | [F] |
<Instruct>: Given the context 'Comparison of 16S rRNA gene sequences revealed that the isolate shared 97.6 % sequence similarity with Serinicoccus marinus JC1078(T), the type strain of the only described species of the genus Serinicoccus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [serinicoccus marinus]
<Options>: A: serinicoccus marinus
B: seonamhaeicola marinus
C: agromyces marinus
D: roseicyclus marinus
E: teleogryllus marini
F: None of the above. | [A] |
<Instruct>: Given the context 'Other characteristics of strain MCCC 1A05965(T) were consistent with those of the genus Serinicoccus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mccc 1a05965]
<Options>: A: uncultured organism meddcm-oct-s12-c54
B: uncultured organism meddcm-oct-s05-c138
C: pasteurella aerogenes mccm 01550
D: uncultured organism meddcm-oct-s12-c71
E: uncultured prochlorococcus marinus clone hot0m-5c8
F: None of the above. | [F] |
<Instruct>: Given the context 'Strain MCCC 1A05965(T)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mccc 1a05965]
<Options>: A: enterobacteriaceae bacterium mcc505
B: uncultured organism meddcm-oct-s08-c695
C: micrococcus sp. mccc 1a09815
D: uncultured organism meddcm-oct-s01-c5
E: uncultured organism meddcm-oct-s04-c100
F: None of the above. | [F] |
<Instruct>: Given the context '=CGMCC 4.5582(T)) is assigned as the type strain of a novel species, for which the name Serinicoccus profundi sp. nov. is proposed.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [serinicoccus profundi sp. nov]
<Options>: A: serinicoccus sp. s24
B: serinicoccus sp. 13-12-11
C: serinicoccus profundi
D: serinicoccus hydrothermalis
E: dermacoccus profundi
F: None of the above. | [C] |
<Instruct>: Given the context 'High-titer autologous neutralizing antibody responses have been demonstrated during early subtype C human immunodeficiency virus type 1 (HIV-1) infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human immunodeficiency virus type 1; hiv-1]
<Options>: A: lav-1 (aka human immunodeficiency virus 1)
B: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
C: human immunodeficiency virus type 1 (kb-1 isolate)
D: human immunodeficiency virus type 1 (new york-5 isolate)
E: None of the above. | [A; A] |
<Instruct>: Given the context 'High-titer autologous neutralizing antibody responses have been demonstrated during early subtype C human immunodeficiency virus type 1 (HIV-1) infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human immunodeficiency virus type 1; hiv-1]
<Options>: A: human immunodeficiency virus type 1 (new york-5 isolate)
B: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
C: lav-1 (aka human immunodeficiency virus 1)
D: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
E: human immunodeficiency virus type 1 (kb-1 isolate)
F: None of the above. | [C; C] |
<Instruct>: Given the context 'Poliovirus RNA is released from the capsid near a twofold symmetry axis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [poliovirus]
<Options>: A: poliovirus (aka enterovirus c)
B: poliovirus 2 (human poliovirus type 2) (aka poliovirus 2)
C: murine poliovirus (aka theiler's encephalomyelitis virus)
D: pv1 (aka poliovirus 1) (aka poliovirus 1)
E: p virus
F: None of the above. | [A] |
<Instruct>: Given the context 'After recognizing and binding to its host cell, poliovirus (like other nonenveloped viruses) faces the challenge of translocating its genome across a cellular membrane and into the cytoplasm.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [poliovirus]
<Options>: A: murine poliovirus (aka theiler's encephalomyelitis virus)
B: human poliovirus 2 (aka poliovirus 2)
C: poliovirus (aka enterovirus c)
D: human poliovirus type 3 (aka poliovirus 3)
E: p virus
F: None of the above. | [C] |
<Instruct>: Given the context 'To help to elucidate the mechanism of infection, we have used single-particle cryo-electron microscopy and tomography to reconstruct conformationally altered intermediates that are formed by the poliovirion at various stages of the poliovirus infection process.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [poliovirus]
<Options>: A: murine poliovirus (aka theiler's encephalomyelitis virus)
B: p virus
C: poliovirus (aka enterovirus c)
D: unidentified poliovirus
E: human poliovirus 3 (aka poliovirus 3)
F: None of the above. | [C] |
<Instruct>: Given the context 'Yeast-elicited cross-reactive antibodies to HIV Env glycans efficiently neutralize virions expressing exclusively high-mannose N-linked glycans.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast; hiv]
<Options>: A: saccharomyces hansenii (aka debaryomyces hansenii)
B: human immunodeficiency virus type 1 hiv 1 (aka human immunodeficiency virus 1)
C: aids virus (aka human immunodeficiency virus 2)
D: saccharomyces ovalis (aka malassezia furfur)
E: aids virus (aka human immunodeficiency virus)
F: human immunodeficiency virus 3 (hiv (aka human immunodeficiency virus 3))
G: saccharomycodes
H: saccharomyces drosophilarum (aka kluyveromyces lactis)
I: mycoderma cerevisiae (aka saccharomyces cerevisiae)
J: None of the above. | [I; E] |
<Instruct>: Given the context 'Yeast-elicited cross-reactive antibodies to HIV Env glycans efficiently neutralize virions expressing exclusively high-mannose N-linked glycans.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast; hiv]
<Options>: A: saccharomyces albicans (aka candida albicans)
B: aids virus (aka human immunodeficiency virus 2)
C: hiv-1 (aka human immunodeficiency virus 1)
D: human immunodeficiency virus 3 (hiv (aka human immunodeficiency virus 3))
E: baker's yeast (aka saccharomyces cerevisiae)
F: saccharomyces rouxii (aka zygosaccharomyces rouxii)
G: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
H: saccharomyces hansenii (aka debaryomyces hansenii)
I: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
J: None of the above. | [E; I] |
<Instruct>: Given the context 'We have described a triple mutant Saccharomyces cerevisiae strain that expresses high-mannose glycoproteins that bind to 2G12.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [saccharomyces cerevisiae]
<Options>: A: saccharomyces oviformis (aka saccharomyces cerevisiae)
B: saccharomyces drosophilarum (aka kluyveromyces lactis)
C: saccharomyces rouxii (aka zygosaccharomyces rouxii)
D: saccharomyces hansenii (aka debaryomyces hansenii)
E: saccharomyces pasteurianus (aka saccharomyces pastorianus)
F: None of the above. | [A] |
<Instruct>: Given the context 'When used to immunize rabbits, this yeast elicits antibodies that bind to gp120-associated glycans but fail to neutralize virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rabbits; yeast]
<Options>: A: rabbits and hares (aka leporidae)
B: saccharomyces globosus (aka saccharomyces uvarum)
C: brewer's yeast (aka saccharomyces cerevisiae)
D: sylvilagus palustris (lepus palustris) (aka sylvilagus palustris)
E: european rabbit (aka oryctolagus cuniculus)
F: saccharomyces ovalis (aka malassezia furfur)
G: riverine rabbit (aka bunolagus monticularis)
H: oryctolagus
I: saccharomyces rouxii (aka zygosaccharomyces rouxii)
J: saccharomyces marxianus (aka kluyveromyces marxianus)
K: None of the above. | [E; C] |
<Instruct>: Given the context 'When used to immunize rabbits, this yeast elicits antibodies that bind to gp120-associated glycans but fail to neutralize virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rabbits; yeast]
<Options>: A: saccharomyces rouxii (aka zygosaccharomyces rouxii)
B: brewer's yeast (aka saccharomyces cerevisiae)
C: saccharomyces fermentati (aka torulaspora delbrueckii)
D: japanese white rabbit (aka oryctolagus cuniculus)
E: saccharomyces ovalis (aka malassezia furfur)
F: pygmy rabbit (aka brachylagus idahoensis)
G: saccharomyces marxianus (aka kluyveromyces marxianus)
H: riverine rabbit (aka bunolagus monticularis)
I: rabbits and hares (aka leporidae)
J: scrub hare (aka lepus saxatilis)
K: None of the above. | [D; B] |
<Instruct>: Given the context 'Affinity purification of sera over columns conjugated with three 2G12-reactive yeast glycoproteins showed that these proteins could adsorb 80% of the antibodies that bind to gp120 glycans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: saccharomyces oviformis (aka saccharomyces cerevisiae)
B: saccharomyces fermentati (aka torulaspora delbrueckii)
C: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
D: saccharomyces hansenii (aka debaryomyces hansenii)
E: saccharomyces marxianus (aka kluyveromyces marxianus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Combined, these data show that the triple mutant yeast strain elicits antibodies that bind to high-mannose glycans presented on the HIV envelope, but only when they are displayed in a manner not found on native Env trimers.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: saccharomyces ovalis (aka malassezia furfur)
B: saccharomyces fermentati (aka torulaspora delbrueckii)
C: saccharomycodes
D: saccharomyces oviformis (aka saccharomyces cerevisiae)
E: torulaspora lactis (aka kluyveromyces lactis)
F: None of the above. | [D] |
<Instruct>: Given the context 'Here, we report the sequencing of the small RNAs in rat cytomegalovirus (RCMV)-infected fibroblasts and persistently infected salivary glands.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat cytomegalovirus; rcmv]
<Options>: A: cabmv (aka cowpea aphid-borne mosaic virus)
B: rattus exulans cytomegalovirus 1
C: rcnmv (aka red clover necrotic mosaic virus)
D: rat herpesvirus
E: cgrmv (aka cherry green ring mottle virus)
F: rat minute virus
G: murid betaherpesvirus 2 (rat cytomegalovirus) (aka murid betaherpesvirus 2)
H: catharanthus mosaic virus
I: carmel mito-like virus
J: rattus tiomanicus cytomegalovirus 1
K: None of the above. | [G; G] |
<Instruct>: Given the context 'Here, we report the sequencing of the small RNAs in rat cytomegalovirus (RCMV)-infected fibroblasts and persistently infected salivary glands.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat cytomegalovirus; rcmv]
<Options>: A: cnrmv (aka cherry necrotic rusty mottle virus)
B: rattus norvegicus adenovirus
C: marr virus
D: catharanthus mosaic virus
E: red clover necrotic mosaic virus (rcnmv) (aka red clover necrotic mosaic virus)
F: carnation mottle virus (carmv) (aka carnation mottle virus)
G: rattus rat parvovirus
H: cynomys herpesvirus
I: mus rat parvovirus
J: murid betaherpesvirus 2 (rat cytomegalovirus) (aka murid betaherpesvirus 2)
K: None of the above. | [J; J] |
<Instruct>: Given the context 'The RCMV miRNAs are distributed across the viral genome on both the positive and negative strands, with clusters of miRNAs at a number of locations, including near viral genes r1 and r111.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv]
<Options>: A: crv (aka cowbone ridge virus) (aka cowbone ridge virus)
B: rattus gemycircularvirus
C: cgrmv (aka cherry green ring mottle virus)
D: rat minute virus
E: carmel mito-like virus
F: None of the above. | [F] |
<Instruct>: Given the context 'The RCMV miRNAs have a genomic positional orientation similar to that of the miRNAs described for mouse cytomegalovirus, but they do not share any substantial sequence conservation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv; mouse cytomegalovirus]
<Options>: A: mouse cytomegalovirus
B: catharanthus mosaic virus
C: mice minute virus (aka minute virus of mice)
D: crmav (aka cherry rusty mottle associated virus)
E: mouse cytomegalovirus 1 (aka murid betaherpesvirus 1)
F: replication competent viruses
G: carmv (aka carnation mottle virus)
H: mouse herpesvirus 68 (aka murid gammaherpesvirus 4)
I: mouse thymic virus (aka murid herpesvirus 3)
J: rattus gemycircularvirus
K: None of the above. | [K; E] |
<Instruct>: Given the context 'The RCMV miRNAs have a genomic positional orientation similar to that of the miRNAs described for mouse cytomegalovirus, but they do not share any substantial sequence conservation.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv; mouse cytomegalovirus]
<Options>: A: rat cytomegalovirus (aka murid betaherpesvirus 2)
B: carmel mito-like virus
C: crv (aka cowbone ridge virus) (aka cowbone ridge virus)
D: murine cytomegalovirus (aka murid betaherpesvirus 1)
E: cgrmv (aka cherry green ring mottle virus)
F: rcmv (aka red clover mottle virus) (aka red clover mottle virus)
G: rat minute virus
H: murine cytomegalovirus (strain smith)
I: murine circovirus
J: mouse herpesvirus 68 (aka murid gammaherpesvirus 4)
K: None of the above. | [K; D] |
<Instruct>: Given the context 'Similar to other reported miRNAs, the RCMV miRNAs had considerable variation at their 3' and 5' ends.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv]
<Options>: A: cgrmv (aka cherry green ring mottle virus)
B: ribgrass mosaic virus
C: rcmv (aka red clover mottle virus) (aka red clover mottle virus)
D: marr virus
E: gcmv (aka grapevine chrome mosaic virus) (aka grapevine chrome mosaic virus)
F: None of the above. | [F] |
<Instruct>: Given the context 'We determined by real-time PCR that expression of the RCMV miRNA miR-r111.1-2 is highly expressed in the salivary glands and that miR-R87-1 is expressed in most tissues during the acute infection phase.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv]
<Options>: A: marr virus
B: ribgrass mosaic virus
C: rattus gemycircularvirus
D: rat minute virus
E: cgrmv (aka cherry green ring mottle virus)
F: None of the above. | [F] |
<Instruct>: Given the context 'Our study identified the miRNAs expressed by RCMV in vitro and in vivo and demonstrated that expression is tissue specific and associated with a stage of viral infection.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rcmv]
<Options>: A: crmav (aka cherry rusty mottle associated virus)
B: rat minute virus
C: catharanthus mosaic virus
D: cabmv (aka cowpea aphid-borne mosaic virus)
E: cowbone ridge virus (crv (aka cowbone ridge virus))
F: None of the above. | [F] |
<Instruct>: Given the context 'Furthermore, infection of mice with rJPVDeltaSH induced more TNF-alpha expression, indicating that SH plays a role in blocking TNF-alpha expression in vivo.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mouse (aka mus musculus)
B: mus musculus castaneus (southeastern asian house mouse) (aka mus musculus castaneus)
C: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
D: mus californicus (aka peromyscus californicus)
E: mus terricolor (earth-colored mouse) (aka mus terricolor)
F: None of the above. | [A] |
<Instruct>: Given the context 'Translational control of the abundance of cytoplasmic poly(A) binding protein in human cytomegalovirus-infected cells.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human cytomegalovirus]
<Options>: A: murine cytomegalovirus mcmv (aka murid betaherpesvirus 1)
B: human gammaherpesvirus 4 (human herpesvirus 4 (epstein-barr virus)) (aka human gammaherpesvirus 4)
C: human cytomegalovirus (strain 1042) (aka human herpesvirus 5 (strain 1042))
D: human herpesvirus 5 (aka human betaherpesvirus 5)
E: human herpesvirus 8 (aka human gammaherpesvirus 8)
F: None of the above. | [D] |
<Instruct>: Given the context 'Irrespective of their effects on ongoing host protein synthesis, productive replication of the representative alphaherpesvirus herpes simplex virus type 1, the representative gammaherpesvirus Kaposi's sarcoma herpesvirus, and the representative betaherpesvirus human cytomegalovirus [HCMV] stimulates the assembly of the multisubunit, cap-binding translation factor eIF4F. However, only HCMV replication is associated with an increased abundance of eIF4F core components (eIF4E, eIF4G, eIF4A) and the eIF4F-associated factor poly(A) binding protein (PABP).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [herpes simplex virus type 1; kaposi's sarcoma herpesvirus; human cytomegalovirus; hcmv]
<Options>: A: human alphaherpesvirus 1 strain f (herpes simplex virus (type 1 / strain f)) (aka human alphaherpesvirus 1 strain f)
B: human cytomegalovirus (aka human betaherpesvirus 5)
C: hhv8 (aka human gammaherpesvirus 8) (aka human gammaherpesvirus 8)
D: human herpesvirus 7 (aka human betaherpesvirus 7)
E: human alphaherpesvirus 2 (herpes simplex virus type 2 (hsv-2)) (aka human alphaherpesvirus 2)
F: herpesvirus m (aka saimiriine alphaherpesvirus 1)
G: human herpesvirus 5 strain ad169 (human cytomegalovirus (strain ad169)) (aka human herpesvirus 5 strain ad169)
H: human herpesvirus 1 (aka human alphaherpesvirus 1)
I: rat cytomegalovirus (aka murid betaherpesvirus 2)
J: herpesvirus sylvilagus (rabbit gamma-herpesvirus) (aka herpesvirus sylvilagus)
K: hhv-7 (aka human betaherpesvirus 7)
L: human alphaherpesvirus 1 strain kos (herpes simplex virus (type 1 / strain kos)) (aka human alphaherpesvirus 1 strain kos)
M: simian herpes b virus (aka macacine alphaherpesvirus 1)
N: mouse cytomegalovirus
O: human cytomegalovirus (strain 4654) (aka human herpesvirus 5 (strain 4654))
P: hsv-1 (aka human alphaherpesvirus 1)
Q: murine cytomegalovirus mcmv (aka murid betaherpesvirus 1)
R: herpesvirus tamarinus (aka saimiriine alphaherpesvirus 1)
S: herpes simplexvirus
T: None of the above. | [P; C; B; B] |
<Instruct>: Given the context 'Irrespective of their effects on ongoing host protein synthesis, productive replication of the representative alphaherpesvirus herpes simplex virus type 1, the representative gammaherpesvirus Kaposi's sarcoma herpesvirus, and the representative betaherpesvirus human cytomegalovirus [HCMV] stimulates the assembly of the multisubunit, cap-binding translation factor eIF4F. However, only HCMV replication is associated with an increased abundance of eIF4F core components (eIF4E, eIF4G, eIF4A) and the eIF4F-associated factor poly(A) binding protein (PABP).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [herpes simplex virus type 1; kaposi's sarcoma herpesvirus; human cytomegalovirus; hcmv]
<Options>: A: herpes simplexvirus
B: herpes b virus (aka macacine alphaherpesvirus 1)
C: hhv-3 (aka human alphaherpesvirus 3)
D: human alphaherpesvirus 1 strain f (herpes simplex virus (type 1 / strain f)) (aka human alphaherpesvirus 1 strain f)
E: rhesus cytomegalovirus (aka macacine betaherpesvirus 3)
F: cytomegalovirus
G: human herpesvirus 5 (aka human betaherpesvirus 5)
H: herpesvirus tamarinus (aka saimiriine alphaherpesvirus 1)
I: kshv (aka human gammaherpesvirus 8) (aka human gammaherpesvirus 8)
J: human betaherpesvirus 6a (human herpesvirus 6a) (aka human betaherpesvirus 6a)
K: mouse cytomegalovirus
L: rodent herpesvirus
M: human gammaherpesvirus 4 (human herpesvirus 4 (epstein-barr virus)) (aka human gammaherpesvirus 4)
N: herpes simplex virus ii (aka human alphaherpesvirus 2)
O: simian herpes b virus (aka macacine alphaherpesvirus 1)
P: cottontail herpesvirus (aka herpesvirus sylvilagus)
Q: human herpesvirus type 1 (aka human alphaherpesvirus 1)
R: unidentified cytomegalovirus
S: human alphaherpesvirus 1 strain kos (herpes simplex virus (type 1 / strain kos)) (aka human alphaherpesvirus 1 strain kos)
T: None of the above. | [Q; I; G; G] |
<Instruct>: Given the context 'Irrespective of their effects on ongoing host protein synthesis, productive replication of the representative alphaherpesvirus herpes simplex virus type 1, the representative gammaherpesvirus Kaposi's sarcoma herpesvirus, and the representative betaherpesvirus human cytomegalovirus [HCMV] stimulates the assembly of the multisubunit, cap-binding translation factor eIF4F. However, only HCMV replication is associated with an increased abundance of eIF4F core components (eIF4E, eIF4G, eIF4A) and the eIF4F-associated factor poly(A) binding protein (PABP).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [herpes simplex virus type 1; kaposi's sarcoma herpesvirus; human cytomegalovirus; hcmv]
<Options>: A: human alphaherpesvirus 1 strain f (herpes simplex virus (type 1 / strain f)) (aka human alphaherpesvirus 1 strain f)
B: herpes simplexvirus
C: human cytomegalovirus (strain 1042) (aka human herpesvirus 5 (strain 1042))
D: herpes simplex virus type 1 hsv1 (aka human alphaherpesvirus 1)
E: hhv-3 (aka human alphaherpesvirus 3)
F: hhv8 (aka human gammaherpesvirus 8) (aka human gammaherpesvirus 8)
G: human herpesvirus 5 (aka human betaherpesvirus 5)
H: rat cytomegalovirus (aka murid betaherpesvirus 2)
I: kaptombes virus
J: human herpesvirus 4 (aka human gammaherpesvirus 4)
K: herpesvirus m (aka saimiriine alphaherpesvirus 1)
L: rhesus cytomegalovirus (aka macacine betaherpesvirus 3)
M: human herpesvirus 6b (aka human betaherpesvirus 6b)
N: herpesvirus tamarinus (aka saimiriine alphaherpesvirus 1)
O: human alphaherpesvirus 1 strain kos (herpes simplex virus (type 1 / strain kos)) (aka human alphaherpesvirus 1 strain kos)
P: herpes simplex virus ii (aka human alphaherpesvirus 2)
Q: hhv-7 (aka human betaherpesvirus 7)
R: murine cytomegalovirus (aka murid betaherpesvirus 1)
S: human betaherpesvirus 6a (human herpesvirus 6a) (aka human betaherpesvirus 6a)
T: None of the above. | [D; F; G; G] |
<Instruct>: Given the context 'Irrespective of their effects on ongoing host protein synthesis, productive replication of the representative alphaherpesvirus herpes simplex virus type 1, the representative gammaherpesvirus Kaposi's sarcoma herpesvirus, and the representative betaherpesvirus human cytomegalovirus [HCMV] stimulates the assembly of the multisubunit, cap-binding translation factor eIF4F. However, only HCMV replication is associated with an increased abundance of eIF4F core components (eIF4E, eIF4G, eIF4A) and the eIF4F-associated factor poly(A) binding protein (PABP).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [herpes simplex virus type 1; kaposi's sarcoma herpesvirus; human cytomegalovirus; hcmv]
<Options>: A: herpes simplex virus (type 1 / strain kos) (aka human alphaherpesvirus 1 strain kos)
B: human cytomegalovirus (aka human betaherpesvirus 5)
C: herpes virus b (aka macacine alphaherpesvirus 1)
D: human herpesvirus 8 (aka human gammaherpesvirus 8)
E: porcine cytomegalovirus (aka suid betaherpesvirus 2)
F: human cytomegalovirus (strain 1042) (aka human herpesvirus 5 (strain 1042))
G: herpes simplex virus ii (aka human alphaherpesvirus 2)
H: kshv (aka human gammaherpesvirus 8) (aka human gammaherpesvirus 8)
I: human alphaherpesvirus 1 strain f (herpes simplex virus (type 1 / strain f)) (aka human alphaherpesvirus 1 strain f)
J: rodent herpesvirus
K: simian herpes b virus (aka macacine alphaherpesvirus 1)
L: herpes simplexvirus
M: hsv-1 (aka human alphaherpesvirus 1)
N: human herpesvirus 1 (aka human alphaherpesvirus 1)
O: kaptombes virus
P: human cytomegalovirus (strain pt) (aka human herpesvirus 5 strain pt)
Q: japanese cytomegalovirus
R: phocid herpesvirus-1 (aka phocid alphaherpesvirus 1)
S: mouse cytomegalovirus
T: None of the above. | [M; H; B; B] |
<Instruct>: Given the context 'Irrespective of their effects on ongoing host protein synthesis, productive replication of the representative alphaherpesvirus herpes simplex virus type 1, the representative gammaherpesvirus Kaposi's sarcoma herpesvirus, and the representative betaherpesvirus human cytomegalovirus [HCMV] stimulates the assembly of the multisubunit, cap-binding translation factor eIF4F. However, only HCMV replication is associated with an increased abundance of eIF4F core components (eIF4E, eIF4G, eIF4A) and the eIF4F-associated factor poly(A) binding protein (PABP).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcmv]
<Options>: A: herpesvirus m (aka saimiriine alphaherpesvirus 1)
B: human herpesvirus 1 (aka human alphaherpesvirus 1)
C: human betaherpesvirus 5 (human herpesvirus type 5) (aka human betaherpesvirus 5)
D: unidentified cytomegalovirus
E: human herpesvirus 5 strain ad169 (human cytomegalovirus (strain ad169)) (aka human herpesvirus 5 strain ad169)
F: None of the above. | [C] |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.