instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
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<Instruct>: Given the context 'The human adenovirus E4orf4 protein is toxic in both human tumor cells and Saccharomyces cerevisiae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; saccharomyces cerevisiae]
<Options>: A: macrobiotus sapiens
B: cardium humanum (aka glossus humanus)
C: humans (aka homo)
D: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
E: saccharomyces ovalis (aka malassezia furfur)
F: saccharomyces marxianus (aka kluyveromyces marxianus)
G: sphaeria humana (aka sordaria humana)
H: saccharomyces globosus (aka saccharomyces uvarum)
I: megasphaera cerevisiae
J: None of the above. | [J; D] |
<Instruct>: Given the context 'Previous studies indicated that most of this toxicity is dependent on an interaction of E4orf4 protein with the B55 class of regulatory subunits of protein phosphatase 2A (PP2A) and in yeast with the B55 homolog Cdc55.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: saccharomyces albicans (aka candida albicans)
B: saccharomyces oviformis (aka saccharomyces cerevisiae)
C: saccharomyces rouxii (aka zygosaccharomyces rouxii)
D: saccharomyces marxianus (aka kluyveromyces marxianus)
E: saccharomycodes
F: None of the above. | [B] |
<Instruct>: Given the context 'In both cases, amino-terminal polypeptides composed only of blade 1 and at least part of blade 2 were found to bind E4orf4 and overexpression blocked E4orf4 toxicity in yeast.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: torulaspora lactis (aka kluyveromyces lactis)
B: torulaspora hansenii (aka debaryomyces hansenii)
C: saccharomyces italicus (aka saccharomyces cerevisiae)
D: saccharomyces albicans (aka candida albicans)
E: saccharomycodes
F: None of the above. | [C] |
<Instruct>: Given the context 'Accelerometry estimates field metabolic rate in giant Australian cuttlefish Sepia apama during breeding.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [giant australian cuttlefish; sepia apama]
<Options>: A: giant australian cuttlefish (aka ascarosepion apama)
B: adesmia monosperma
C: cynips agama
D: golden cuttlefish (aka acanthosepion esculentum)
E: pseudosperma melleum
F: austroclima sepia
G: giant catfish (aka pangasianodon gigas)
H: grey stingfish (aka minous monodactylus)
I: chondracanthus australis
J: None of the above. | [A; A] |
<Instruct>: Given the context 'Accelerometry estimates field metabolic rate in giant Australian cuttlefish Sepia apama during breeding.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [giant australian cuttlefish; sepia apama]
<Options>: A: anthophora agama
B: gasteracantha clavatrix
C: victorian scalyfin (aka parma victoriae)
D: grey commodore (aka bhagadatta austenia)
E: golden weedfish (aka cristiceps aurantiacus)
F: amanita sepiacea
G: fumaria sepium
H: sepiana sepium
I: giant australian cuttlefish (aka ascarosepion apama)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'We combined two-dimensional accelerometry and swim-tunnel respirometry to estimate patterns of energy expenditure in giant Australian cuttlefish Sepia apama during breeding.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [giant australian cuttlefish; sepia apama]
<Options>: A: acanthiophilus griseus (aka tephritomyia grisea)
B: cynips agama
C: giant catfish (aka pangasianodon gigas)
D: threadfin butterflyfish (aka chaetodon auriga)
E: giant australian cuttlefish (aka ascarosepion apama)
F: apamea scoparia
G: paramoeba aparasomata
H: fumaria sepium
I: golden weedfish (aka cristiceps aurantiacus)
J: None of the above. | [E; E] |
<Instruct>: Given the context 'We combined two-dimensional accelerometry and swim-tunnel respirometry to estimate patterns of energy expenditure in giant Australian cuttlefish Sepia apama during breeding.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [giant australian cuttlefish; sepia apama]
<Options>: A: golden weedfish (aka cristiceps aurantiacus)
B: giant australian cuttlefish (aka ascarosepion apama)
C: australian grey smooth-hound (aka mustelus ravidus)
D: anthophora agama
E: phyllopezus selmae
F: amanita sepiacea
G: austroclima sepia
H: grey stingfish (aka minous monodactylus)
I: macroderma gigas (australian giant false vampire) (aka macroderma gigas)
J: None of the above. | [B; B] |
<Instruct>: Given the context 'We combined two-dimensional accelerometry and swim-tunnel respirometry to estimate patterns of energy expenditure in giant Australian cuttlefish Sepia apama during breeding.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [giant australian cuttlefish; sepia apama]
<Options>: A: amanita sepiacea
B: australian grey smooth-hound (aka mustelus ravidus)
C: macroderma gigas (australian giant false vampire) (aka macroderma gigas)
D: phyllopezus selmae
E: anthophora agama
F: golden weedfish (aka cristiceps aurantiacus)
G: grey stingfish (aka minous monodactylus)
H: austroclima sepia
I: None of the above. | [I; I] |
<Instruct>: Given the context 'Predation is associated with variation in colour pattern, but not body shape or colour reflectance, in a rainbowfish (Melanotaenia australis).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rainbowfish; melanotaenia australis]
<Options>: A: atlantic rainbow smelt (aka osmerus mordax mordax)
B: austronereia australis
C: red-finned rainbowfish (aka melanotaenia rubripinnis)
D: melissodes australis (aka diadasia australis)
E: mediterranean rainbow wrasse (aka coris julis)
F: salmon rockfish (aka mycteroperca interstitialis)
G: tenagomysis australis
H: western rainbowfish (aka melanotaenia australis)
I: amanita australis
J: None of the above. | [H; H] |
<Instruct>: Given the context 'Predation is associated with variation in colour pattern, but not body shape or colour reflectance, in a rainbowfish (Melanotaenia australis).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rainbowfish; melanotaenia australis]
<Options>: A: western rainbowfish (aka melanotaenia australis)
B: mascagnia australis
C: red-striped rainbowfish (aka melanotaenia rubrostriatus)
D: maoutia australis
E: axianassa australis
F: atlantic rainbow smelt (aka osmerus mordax mordax)
G: monardella australis
H: river trout (aka salmo trutta)
I: gila trout (aka oncorhynchus gilae)
J: None of the above. | [A; A] |
<Instruct>: Given the context 'The western rainbowfish Melanotaenia australis exhibits marked sexual dimorphism - females are plain with a slender body, while males have striking coloration and are deeper in the body.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [western rainbowfish; melanotaenia australis]
<Options>: A: red-finned rainbowfish (aka melanotaenia rubripinnis)
B: gila trout (aka oncorhynchus gilae)
C: monardella australis
D: metzgeria australis
E: melania australis (aka thiara australis)
F: western rainbowfish (aka melanotaenia australis)
G: eastern rainbow fish (aka melanotaenia splendida)
H: western australian salmon (aka arripis truttaceus)
I: axianassa australis
J: None of the above. | [F; F] |
<Instruct>: Given the context 'The western rainbowfish Melanotaenia australis exhibits marked sexual dimorphism - females are plain with a slender body, while males have striking coloration and are deeper in the body.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [western rainbowfish; melanotaenia australis]
<Options>: A: monardella australis
B: meuschenia australis (southern leatherjacket) (aka meuschenia australis)
C: murray river rainbowfish (aka melanotaenia fluviatilis)
D: metzgeria australis
E: river trout (aka salmo trutta)
F: red rainbowfish (aka glossolepis incisus)
G: axianassa australis
H: western rainbowfish (aka melanotaenia australis)
I: western australian salmon (aka arripis truttaceus)
J: None of the above. | [H; H] |
<Instruct>: Given the context 'This paper describes a study designed to test for geographic structuring of male phenotype in M. australis and to determine whether between-population variation in male phenotype is attributable to variation in predation regime, after accounting for environment.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. australis]
<Options>: A: myrsine australis
B: maratus australis
C: maia australis (aka leptomithrax australis)
D: melissodes australis (aka diadasia australis)
E: myosurus australis
F: None of the above. | [F] |
<Instruct>: Given the context '4. We collected data describing habitat, and the size, activity and abundance of predators at sites containing M. australis populations.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. australis]
<Options>: A: mytilidion australe (aka mytilinidion australe)
B: monodonta australis
C: mitrodetus australis
D: metaxaglaea australis
E: martensia australis
F: None of the above. | [F] |
<Instruct>: Given the context 'Downstream environments posed higher predation risk to M. australis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. australis]
<Options>: A: macarthuria australis
B: metaxaglaea australis
C: martensia australis
D: maurillus australis
E: brachymyrmex australis
F: None of the above. | [F] |
<Instruct>: Given the context 'We conclude that natural selection by predators may be an important determinant of the evolution of colour pattern variation in M. australis, but not of that of body shape or colour reflectance.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. australis]
<Options>: A: maia australis (aka leptomithrax australis)
B: myosurus australis
C: macarthuria australis
D: malesiathrips australis
E: metzgeria australis
F: None of the above. | [F] |
<Instruct>: Given the context 'Further study of M. australis will complement existing models, which show complex relationships between predation regime, environment and phenotype.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. australis]
<Options>: A: megalestes australis
B: brachymyrmex australis
C: mascagnia australis
D: malesiathrips australis
E: maratus australis
F: None of the above. | [F] |
<Instruct>: Given the context 'Distribution and localization of microsatellites in the Perigord black truffle genome and identification of new molecular markers.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [perigord black truffle]
<Options>: A: perigord truffle (aka tuber melanosporum)
B: burgundy truffle (aka tuber uncinatum)
C: chinese black truffle (aka tuber himalayense)
D: thyone nigra
E: winter truffle (aka tuber brumale)
F: None of the above. | [A] |
<Instruct>: Given the context 'The level of genetic diversity and genetic structure in the Perigord black truffle (Tuber melanosporum Vittad.) has been debated for several years, mainly due to the lack of appropriate genetic markers.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [perigord black truffle; tuber melanosporum vittad.]
<Options>: A: tuber macrosporum
B: tuber xanthomonosporum
C: melusina tuberosa (aka simulium tuberosum)
D: black truffle (aka tuber melanosporum)
E: thyone nigra
F: ruellia tuberosa
G: summer truffle (aka tuber aestivum)
H: white piedmont truffle (aka tuber magnatum)
I: polytrichum perigoniale
J: None of the above. | [D; D] |
<Instruct>: Given the context 'The level of genetic diversity and genetic structure in the Perigord black truffle (Tuber melanosporum Vittad.) has been debated for several years, mainly due to the lack of appropriate genetic markers.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [perigord black truffle; tuber melanosporum vittad.]
<Options>: A: tuber polymorphosporum
B: tuber melanorufum
C: agaricus melanosporus (secotium melanosporum) (aka agaricus melanosporus)
D: white truffle (aka tuber magnatum)
E: black drum (aka pogonias cromis)
F: black truffle (aka tuber melanosporum)
G: ochtheosus fungicolus
H: melusina tuberosa (aka simulium tuberosum)
I: red-grained black truffle (aka tuber aestivum)
J: None of the above. | [F; F] |
<Instruct>: Given the context 'In this study, we surveyed the T. melanosporum genome (1) to characterise its SSR pattern; (2) to compare it with SSR patterns found in 48 other fungal and three oomycetes genomes and (3) to identify new polymorphic SSR markers for population genetics.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. melanosporum]
<Options>: A: trichosporon oryzae (aka moesziomyces antarcticus)
B: tuber polymorphosporum
C: trichocladium deosporum (aka torula deospora)
D: french truffle (aka tuber melanosporum)
E: tuber melosporum (picoa melospora) (aka tuber melosporum)
F: None of the above. | [D] |
<Instruct>: Given the context 'The T. melanosporum genome is rich in SSRs with 22,425 SSRs with mono-nucleotides being the most frequent motifs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. melanosporum]
<Options>: A: penicillium melanosporum
B: tuber melosporum (picoa melospora) (aka tuber melosporum)
C: trichoderma glaucum
D: teichospora melanommoides
E: black truffle (aka tuber melanosporum)
F: None of the above. | [E] |
<Instruct>: Given the context 'The T. melanosporum genome is rich in SSRs with 22,425 SSRs with mono-nucleotides being the most frequent motifs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. melanosporum]
<Options>: A: tuber melosporum (picoa melospora) (aka tuber melosporum)
B: penicillium melanosporum
C: trichoderma glaucum
D: teichospora melanommoides
E: None of the above. | [E] |
<Instruct>: Given the context 'Sixty out of 135 PCR-amplified mono-, di-, tri-, tetra, penta, and hexa-nucleotides were polymorphic (44%) within black truffle populations and 27 were randomly selected and analysed on 139 T. melanosporum isolates from France, Italy and Spain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [black truffle; t. melanosporum]
<Options>: A: listronotus tuberosus
B: trichosporum
C: helicosporium luteosporum
D: glomus melanosporum
E: summer truffle (aka tuber aestivum)
F: perigord truffle (aka tuber melanosporum)
G: truffles (aka tuber)
H: tuber melosporum (picoa melospora) (aka tuber melosporum)
I: melilotus infestus
J: None of the above. | [F; F] |
<Instruct>: Given the context 'Sixty out of 135 PCR-amplified mono-, di-, tri-, tetra, penta, and hexa-nucleotides were polymorphic (44%) within black truffle populations and 27 were randomly selected and analysed on 139 T. melanosporum isolates from France, Italy and Spain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [black truffle; t. melanosporum]
<Options>: A: turdus niger (aka lalage nigra)
B: tuber melosporum (picoa melospora) (aka tuber melosporum)
C: listronotus tuberosus
D: trichoderma album
E: penicillium melanosporum
F: trichosporon
G: black truffle (aka tuber melanosporum)
H: chinese black truffle (aka tuber himalayense)
I: tuber aestivum (red-grained black truffle) (aka tuber aestivum)
J: None of the above. | [G; G] |
<Instruct>: Given the context 'One hundred and thirty-two different multilocus genotypes out of the 139 T. melanosporum isolates were identified and the genotypic diversity was high (0.999).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. melanosporum]
<Options>: A: trichocladium deosporum (aka torula deospora)
B: penicillium melanosporum
C: french truffle (aka tuber melanosporum)
D: glomus melanosporum
E: trichoderma album
F: None of the above. | [C] |
<Instruct>: Given the context 'In conclusion, SSRs developed in this study were highly polymorphic and our results showed that T. melanosporum is a species with an important genetic diversity, which is in agreement with its recently uncovered heterothallic mating system.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. melanosporum]
<Options>: A: trichoderma album
B: agaricus melanosporus (secotium melanosporum) (aka agaricus melanosporus)
C: penicillium melanosporum
D: glomus melanosporum
E: french truffle (aka tuber melanosporum)
F: None of the above. | [E] |
<Instruct>: Given the context 'It was shown that a more sensitive indicator of effluent quality was a change in the abundance of attached ciliates with a narrow peristome (Vorticella infusionum and Opercularia coarctata), small flagellates and crawling ciliates (Acineria uncinata) feeding on flagellates.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [vorticella infusionum]
<Options>: A: vorticella infusionum (aka vorticellides infusionum)
B: vittia salina
C: veillonella hominis
D: vorticifex effusa (aka vorticifex effusus)
E: vorticella oceanica
F: None of the above. | [A] |
<Instruct>: Given the context 'Complete genome sequences of three Erwinia amylovora phages isolated in north america and a bacteriophage induced from an Erwinia tasmaniensis strain.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [erwinia amylovora; erwinia tasmaniensis]
<Options>: A: erwinia mallotivora
B: erwinia nulandii (aka erwinia persicina)
C: erwinia amylovora mr1
D: erwinia endophytica
E: erwinia uredovora (aka pantoea ananatis)
F: erwinia tasmaniensis
G: erwinia amylovora la635
H: erwinia amylovora (micrococcus amylovorus) (aka erwinia amylovora)
I: erwinia atroseptica (aka pectobacterium atrosepticum)
J: None of the above. | [H; F] |
<Instruct>: Given the context 'Complete genome sequences of three Erwinia amylovora phages isolated in north america and a bacteriophage induced from an Erwinia tasmaniensis strain.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [erwinia amylovora; erwinia tasmaniensis]
<Options>: A: erwinia amylovora (micrococcus amylovorus) (aka erwinia amylovora)
B: erwinia
C: erwinia endophytica
D: erwinia paradisiaca (aka musicola paradisiaca)
E: erwinia pyri
F: erwinia tasmaniensis
G: erwinia amylovora 692
H: erwinia mallotivora
I: erwinia aphidicola
J: None of the above. | [A; F] |
<Instruct>: Given the context 'Fire blight, a plant disease of economic importance caused by Erwinia amylovora, may be controlled by the application of bacteriophages.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [erwinia amylovora]
<Options>: A: erwinia horticola
B: erwinia amylovora mr1
C: erwinia amylovora 692
D: erwinia pyrifoliae
E: micrococcus amylovorus (aka erwinia amylovora)
F: None of the above. | [E] |
<Instruct>: Given the context 'Here, we provide the complete genome sequences and the annotation of three E. amylovora-specific phages isolated in North America and genomic information about a bacteriophage induced by mitomycin C treatment of an Erwinia tasmaniensis strain that is antagonistic for E. amylovora.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. amylovora; erwinia tasmaniensis]
<Options>: A: erwinia amylovora ea356
B: erwinia endophytica
C: bacillus tracheiphilus (aka erwinia tracheiphila)
D: treponema amylovorum
E: erwinia pyrifoliae
F: erwinia tasmaniensis
G: erwinia atroseptica (aka pectobacterium atrosepticum)
H: erwinia horticola
I: bacterium amylovorus (aka erwinia amylovora)
J: None of the above. | [I; F] |
<Instruct>: Given the context 'Here, we provide the complete genome sequences and the annotation of three E. amylovora-specific phages isolated in North America and genomic information about a bacteriophage induced by mitomycin C treatment of an Erwinia tasmaniensis strain that is antagonistic for E. amylovora.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. amylovora; erwinia tasmaniensis]
<Options>: A: erwinia uredovora (aka pantoea ananatis)
B: erwinia endophytica
C: erwinia pyrifoliae
D: erwinia aphidicola
E: erwinia mallotivora
F: treponema amylovorum
G: micrococcus amylovorus (aka erwinia amylovora)
H: erwinia oleae
I: erwinia tasmaniensis
J: erwinia amylovora cfbp 2585
K: None of the above. | [G; I] |
<Instruct>: Given the context 'The American phages resemble two already-described viral genomes, whereas the E. tasmaniensis phage displays a singular genomic sequence in BLAST searches.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. tasmaniensis]
<Options>: A: erwinia aphidicola
B: epilobium tasmanicum
C: erwinia tasmaniensis
D: echinamoeba thermarum
E: entamoeba terrapinae
F: None of the above. | [C] |
<Instruct>: Given the context 'Maternal influence on philopatry and space use by juvenile brushtail possums (Trichosurus vulpecula).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [trichosurus vulpecula]
<Options>: A: synallaxis vulpecula (aka cranioleuca vulpecula)
B: trichius sexualis
C: mountain brushtail possum (aka trichosurus caninus)
D: trichosurus vulpecula (silver-gray brushtail possum) (aka trichosurus vulpecula)
E: trichurus
F: None of the above. | [D] |
<Instruct>: Given the context 'Of these, nine strains composed a group for which the partial 18S rRNA gene sequence was related to Prasinoderma coloniale.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [prasinoderma coloniale]
<Options>: A: paramyxidium branchialis
B: prasinoderma colonialis (aka prasinoderma coloniale)
C: monocoryne colonialis
D: porpoloma portentosum
E: protoptila lega
F: None of the above. | [B] |
<Instruct>: Given the context 'The ultrastructure, morphology, division process, pigment composition, genome size and molecular genetic phylogeny of these nine strains were investigated, using P. coloniale as a reference.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. coloniale]
<Options>: A: paecilomyces griseus (aka chlorocillium griseum)
B: paramonodictys paeoniae
C: protium gallosum
D: pedobacter planticolens
E: prasinoderma colonialis (aka prasinoderma coloniale)
F: None of the above. | [E] |
<Instruct>: Given the context 'The ultrastructure, morphology, division process, pigment composition, genome size and molecular genetic phylogeny of these nine strains were investigated, using P. coloniale as a reference.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. coloniale]
<Options>: A: paramonodictys paeoniae
B: protium gallosum
C: paecilomyces griseus (aka chlorocillium griseum)
D: pedobacter planticolens
E: None of the above. | [E] |
<Instruct>: Given the context 'nov. shares only 96.9% of identity with that of P. coloniale and contains a conserved insertion of 567bp length not recorded in P. coloniale.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. coloniale]
<Options>: A: prasinoderma colonialis (aka prasinoderma coloniale)
B: pedobacter schmidteae
C: protea pruinosa
D: paramonosiga coloniensis
E: perigrapha centralasiae
F: None of the above. | [A] |
<Instruct>: Given the context 'When compared to P. coloniale, P. singularis sp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. coloniale]
<Options>: A: chlorella coloniales
B: prasinoderma colonialis (aka prasinoderma coloniale)
C: plasmodium juxtanucleare
D: paramonosiga coloniensis
E: pedobacter planticolens
F: None of the above. | [B] |
<Instruct>: Given the context 'Catabolite control protein A controls hydrogen peroxide production and cell death in Streptococcus sanguinis.
Streptococcus sanguinis is a commensal oral bacterium producing hydrogen peroxide (H2O2) that is dependent on pyruvate oxidase (Spx) activity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [streptococcus sanguinis]
<Options>: A: streptococcus sanguinis
B: 'streptococcus pasteuri' (aka streptococcus pasteuri)
C: streptococcus mutans
D: streptococcus australis
E: streptococcus bovis (aka streptococcus equinus)
F: None of the above. | [A] |
<Instruct>: Given the context 'In addition to its well-known role in bacterial antagonism during interspecies competition, H2O2 causes cell death in about 10% of the S. sanguinis population.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. sanguinis]
<Options>: A: streptococcus parasanguis (aka streptococcus parasanguinis)
B: streptococcus ovis
C: fastidiosipila sanguinis
D: streptobacillus canis
E: streptococcus sanguinis
F: None of the above. | [E] |
<Instruct>: Given the context 'Since H2O2 is directly involved in the release of eDNA and bacterial cell death, the presented data suggest that CcpA is a central control element in this important developmental process in S. sanguinis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. sanguinis]
<Options>: A: streptococcus mutans
B: streptococcus sanguinis
C: streptococcus parasuis
D: streptococcus hemolyticus (aka streptococcus pyogenes)
E: bacillus sanguinis
F: None of the above. | [B] |
<Instruct>: Given the context 'Cadherin domains in the polysaccharide-degrading marine bacterium Saccharophagus degradans 2-40 are carbohydrate-binding modules.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [saccharophagus degradans 2-40]
<Options>: A: saccharicrinis fermentans (cytophaga fermentans) (aka saccharicrinis fermentans)
B: microbulbifer degradans (aka saccharophagus degradans)
C: saccharophagus degradans 2-40 (saccharophagus degradans strain 2-40) (aka saccharophagus degradans 2-40)
D: deinococcus depolymerans
E: 'arthrobacter dextranolyticus' (aka arthrobacter dextranolyticus)
F: None of the above. | [B] |
<Instruct>: Given the context 'Regulation of horizontal gene transfer in Bacillus subtilis by activation of a conserved site-specific protease.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus subtilis]
<Options>: A: bacillus mesentericus (aka bacillus subtilis)
B: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
C: bacillus albus
D: sporobolus subtilis
E: bacillus aerius
F: None of the above. | [A] |
<Instruct>: Given the context 'The mobile genetic element ICEBs1 is an integrative and conjugative element (a conjugative transposon) found in Bacillus subtilis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus subtilis]
<Options>: A: bacillus longisporus ('bacillus longisporus') (aka bacillus longisporus)
B: sporobolus subtilis
C: bacillus mesentericus (aka bacillus pumilus)
D: bacillus subtilis (bacillus subtilis/bacillus globigii) (aka bacillus subtilis)
E: bacillus amylolyticus (aka paenibacillus amylolyticus)
F: None of the above. | [D] |
<Instruct>: Given the context 'Distinct roles of multiple NDH-1 complexes in the cyanobacterial electron transport network as revealed by kinetic analysis of P700+ reduction in various Ndh-deficient mutants of Synechocystis sp. strain PCC6803.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [synechocystis sp. strain pcc6803]
<Options>: A: synechocystis sp. s-1
B: synechocystis sp. atcc 27184 (aka synechocystis sp. pcc 6803)
C: synechocystis sp. nr13(2012)
D: synechocystis sp. pcc 7339
E: synechococcus sp. ps673
F: None of the above. | [B] |
<Instruct>: Given the context 'While methyl viologen had only a small effect on P700(+) rereduction kinetics after far-red pulses in KCN-treated wild-type Synechocystis sp. strain PCC6803 and an NdhF3/NdhF4 (NdhF3/F4)-defective mutant, it involved a rather slow P700(+) rereduction in an NdhF1-defective mutant.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [synechocystis sp. strain pcc6803]
<Options>: A: synechocystis sp. atcc 27178 (aka synechocystis sp. pcc 6714)
B: synechocystis sp. pcc 7339
C: synechocystis sp. (atcc 27184) (aka synechocystis sp. pcc 6803)
D: synechocystis sp. c-01
E: synechocystis sp. sai003
F: None of the above. | [C] |
<Instruct>: Given the context 'While methyl viologen had only a small effect on P700(+) rereduction kinetics after far-red pulses in KCN-treated wild-type Synechocystis sp. strain PCC6803 and an NdhF3/NdhF4 (NdhF3/F4)-defective mutant, it involved a rather slow P700(+) rereduction in an NdhF1-defective mutant.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [synechocystis sp. strain pcc6803]
<Options>: A: synechocystis sp. c-01
B: synechocystis sp. atcc 27178 (aka synechocystis sp. pcc 6714)
C: synechocystis sp. sai003
D: synechocystis sp. pcc 7339
E: None of the above. | [E] |
<Instruct>: Given the context 'Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order Parvularculales in the class Alphaproteobacteria.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [htcc2503t; parvularcula bermudensis]
<Options>: A: parvularcula bermudensis
B: pontodrilus bermudensis
C: transposon vector t2al150r200g
D: hypleurochilus bermudensis
E: bacterium htcc4096
F: inct plasmid r394
G: bacterium htcc4153
H: bacterium htcc4110
I: carinozetes bermudensis
J: proporus bermudensis
K: None of the above. | [A; A] |
<Instruct>: Given the context 'Complete genome sequence of strain HTCC2503T of Parvularcula bermudensis, the type species of the order Parvularculales in the class Alphaproteobacteria.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [htcc2503t; parvularcula bermudensis]
<Options>: A: vector pat153hil2
B: lefroyia bermudensis (aka carapus bermudensis)
C: parougia bermudensis (dorvillea bermudensis) (aka parougia bermudensis)
D: bacterium htcc8041
E: proporus bermudensis
F: pontodrilus bermudensis
G: bacterium htcc4155
H: bacterium htcc8010
I: parvularcula bermudensis
J: bacterium htcc4096
K: None of the above. | [I; I] |
<Instruct>: Given the context 'Parvularcula bermudensis, the type species of the order, was isolated from the Sargasso Sea using dilution-to-extinction culturing.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [parvularcula bermudensis]
<Options>: A: lecanora bermudensis
B: parapallene bermudensis
C: parvularcula bermudensis
D: dorvillea bermudensis (aka parougia bermudensis)
E: speleoithona bermudensis
F: None of the above. | [C] |
<Instruct>: Given the context 'We present here the complete genome sequence of Parvularcula bermudensis HTCC2503(T), which contains genes for carotenoid biosynthesis, dimethylsulfoniopropionate demethylase, and transduction-like gene transfer agents.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [parvularcula bermudensis htcc2503(t)]
<Options>: A: parapallene bermudensis
B: proporus bermudensis
C: processa bermudensis
D: speleoithona bermudensis
E: parvularcula bermudensis
F: None of the above. | [E] |
<Instruct>: Given the context 'A small protein required for the switch from {sigma}F to {sigma}G during sporulation in Bacillus subtilis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus subtilis]
<Options>: A: bacillus mobilis
B: bacillus amylolyticus (aka paenibacillus amylolyticus)
C: bacillus aerius
D: bacillus uniflagellatus (aka bacillus subtilis)
E: bacillus albus
F: None of the above. | [D] |
<Instruct>: Given the context 'A cascade of alternative sigma factors governs the program of developmental gene expression during sporulation in Bacillus subtilis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus subtilis]
<Options>: A: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
B: bacillus (aka bacillus <firmicutes>)
C: bacillus rossius
D: bacillus amylolyticus (aka paenibacillus amylolyticus)
E: bacillus mesentericus (aka bacillus subtilis)
F: None of the above. | [E] |
<Instruct>: Given the context 'SecA is the ATPase that acts as the motor for protein export in the general secretory, or Sec, system of Escherichia coli.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: enterobacter aerogenes (aka klebsiella aerogenes)
B: escherichia coli nissle 1917 (escherichia coli strain nissle 1917) (aka escherichia coli nissle 1917)
C: vibrio coli (aka campylobacter coli)
D: escherichia coli 97.1742
E: bacterium coli commune (aka escherichia coli)
F: None of the above. | [E] |
<Instruct>: Given the context 'Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [corynebacterium pseudotuberculosis i19; cow]
<Options>: A: corynebacterium casei
B: ovis canadensis (bighorn sheep) (aka ovis canadensis)
C: corynebacterium pseudotuberculosis (corynebacterium pseudotuberculosis-ovis) (aka corynebacterium pseudotuberculosis)
D: corynebacterium gallinarum
E: corynebacterium bovis
F: bos bubalis (aka bubalus bubalis)
G: bos taurus indicus (aka bos indicus)
H: bos bovis (aka bos taurus)
I: cattle (aka bos)
J: corynebacterium pseudotuberculosis strain i19 (aka corynebacterium pseudotuberculosis i19)
K: None of the above. | [C; H] |
<Instruct>: Given the context 'Complete genome sequence of Corynebacterium pseudotuberculosis I19, a strain isolated from a cow in Israel with bovine mastitis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [corynebacterium pseudotuberculosis i19; cow]
<Options>: A: ruminococcus bovis
B: cattle (aka bos)
C: corynebacterium cystitidis
D: corynebacterium canis
E: corynebacterium gallinarum
F: domestic cattle (aka bos taurus)
G: corynebacterium casei
H: domestic sheep (aka ovis aries)
I: domestic goat (aka capra hircus)
J: corynebacterium ovis (aka corynebacterium pseudotuberculosis)
K: None of the above. | [J; F] |
<Instruct>: Given the context 'This work reports the completion and annotation of the genome sequence of Corynebacterium pseudotuberculosis I19, isolated from an Israeli dairy cow with severe clinical mastitis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [corynebacterium pseudotuberculosis i19; cow]
<Options>: A: corynebacterium preisz-nocardi (aka corynebacterium pseudotuberculosis)
B: corynebacterium bovis
C: domestic sheep (aka ovis aries)
D: ruminococcus bovis
E: ox (aka bos taurus) (aka bos taurus)
F: corynebacterium antarcticum
G: corynebacterium canis
H: corynebacterium casei
I: ovis canadensis (bighorn sheep) (aka ovis canadensis)
J: domestic yak (aka bos grunniens)
K: None of the above. | [A; E] |
<Instruct>: Given the context 'This work reports the completion and annotation of the genome sequence of Corynebacterium pseudotuberculosis I19, isolated from an Israeli dairy cow with severe clinical mastitis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [corynebacterium pseudotuberculosis i19; cow]
<Options>: A: mycobacterium tuberculosis-ovis (aka corynebacterium pseudotuberculosis)
B: ruminococcus bovis
C: ovis canadensis (bighorn sheep) (aka ovis canadensis)
D: bos primigenius taurus (aka bos taurus)
E: bovicola bovis (cattle chewing louse) (aka bovicola bovis)
F: domestic goat (aka capra hircus)
G: corynebacterium casei
H: corynebacterium appendicis
I: corynebacterium antarcticum
J: corynebacterium pseudopelargi
K: None of the above. | [A; D] |
<Instruct>: Given the context 'X-ray structure and site-directed mutagenesis analysis of the Escherichia coli colicin M immunity protein.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: bacterium coli commune (aka escherichia coli)
B: escherichia coli nissle 1917 (escherichia coli strain nissle 1917) (aka escherichia coli nissle 1917)
C: escherichia
D: escherichia freundii (aka citrobacter freundii)
E: escherichia coli 9.1796
F: None of the above. | [A] |
<Instruct>: Given the context 'Colicin M (ColM), which is produced by some Escherichia coli strains to kill competitor strains from the same or related species, was recently shown to inhibit cell wall peptidoglycan biosynthesis through enzymatic degradation of its lipid II precursor.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: escherichia coli 99.1762
B: entamoeba coli
C: escherichia coli 99.1793
D: bacterium coli commune (aka escherichia coli)
E: escherichia coli 97.1742
F: None of the above. | [D] |
<Instruct>: Given the context 'Inactivation of the RluD pseudouridine synthase has minimal effects on growth and ribosome function in wild-type Escherichia coli and Salmonella enterica.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli; salmonella enterica]
<Options>: A: bacterium coli (aka escherichia coli)
B: entamoeba coli
C: salmonella enterica subsp. enterica serovar agona (salmonella agona) (aka salmonella enterica subsp. enterica serovar agona)
D: escherichia coli 99.1762
E: salmonella paratyphi (aka salmonella enterica subsp. enterica serovar paratyphi a)
F: salmonella typhimurium (aka salmonella enterica subsp. enterica serovar typhimurium)
G: escherichia coli 9.1796
H: salmonella cholerae-suis (aka salmonella enterica)
I: escherichia coli 99.1793
J: salmonella enterica subsp. enterica serovar enteritidis (salmonella enterica serovar enteritidis) (aka salmonella enterica subsp. enterica serovar enteritidis)
K: None of the above. | [A; H] |
<Instruct>: Given the context 'Inactivation of the RluD pseudouridine synthase has minimal effects on growth and ribosome function in wild-type Escherichia coli and Salmonella enterica.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli; salmonella enterica]
<Options>: A: escherichia coli 97.1742
B: salmonella enterica serovar typhisuis (aka salmonella enterica subsp. enterica serovar typhisuis)
C: bacillus enteritidis (aka salmonella enterica subsp. enterica serovar enteritidis)
D: enterobacter aerogenes (aka klebsiella aerogenes)
E: escherichia freundii (aka citrobacter freundii)
F: salmonella typhimurium (aka salmonella enterica subsp. enterica serovar typhimurium)
G: escherichia coli nissle 1917 (escherichia coli strain nissle 1917) (aka escherichia coli nissle 1917)
H: escherichia/shigella coli (aka escherichia coli)
I: salmonella choleraesuis (aka salmonella enterica)
J: salmonella enterica serovar typhi (aka salmonella enterica subsp. enterica serovar typhi)
K: None of the above. | [H; I] |
<Instruct>: Given the context 'The Escherichia coli rluD gene encodes a pseudouridine synthase responsible for the pseudouridine (Psi) modifications at positions 1911, 1915, and 1917 in helix 69 of 23S rRNA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: bacterium coli commune (aka escherichia coli)
B: escherichia freundii (aka citrobacter freundii)
C: escherichia coli 9.1796
D: entamoeba coli
E: escherichia coli 99.1793
F: None of the above. | [A] |
<Instruct>: Given the context 'It has been reported that deletion of rluD in K-12 strains of E. coli is associated with extremely slow growth, increased readthrough of stop codons, and defects in 50S ribosomal subunit assembly and 30S-50S subunit association.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [k-12 strains of e. coli]
<Options>: A: escherichia coli k-12 (escherichia coli k12) (aka escherichia coli k-12)
B: escherichia coli strain nissle 1917 (aka escherichia coli nissle 1917)
C: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
D: escherichia coli h7
E: bacterium coli commune (aka escherichia coli)
F: None of the above. | [E] |
<Instruct>: Given the context 'However, further genetic analysis reported here also reveals that the slow growth and other defects associated with inactivation of rluD in E. coli K-12 strains are due to a defective RF2 protein, with a threonine at position 246, which is present in all K-12 strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli k-12; k-12]
<Options>: A: uncultured archaeon knia12
B: escherichia coli h8
C: uncultured archaeon 'ktk 9a'
D: bacillus coli (aka escherichia coli)
E: uncultured crenarchaeote kbsnat1
F: escherichia coli kte1
G: uncultured crenarchaeote kbsnat12
H: escherichia coli kte12
I: escherichia coli h20
J: kinnikinnik (aka cornus amomum)
K: None of the above. | [D; D] |
<Instruct>: Given the context 'However, further genetic analysis reported here also reveals that the slow growth and other defects associated with inactivation of rluD in E. coli K-12 strains are due to a defective RF2 protein, with a threonine at position 246, which is present in all K-12 strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli k-12; k-12]
<Options>: A: uncultured crenarchaeote kbsnat11
B: escherichia coli h8
C: escherichia coli k1
D: kalyptatherina
E: bacillus coli (aka escherichia coli)
F: uncultured kabatina
G: uncultured crenarchaeote kbsnat4
H: escherichia coli kte1
I: escherichia coli k-12 (escherichia coli k12) (aka escherichia coli k-12)
J: entamoeba coli
K: None of the above. | [E; E] |
<Instruct>: Given the context 'This is in contrast to the more typical alanine found at this position in most bacterial RF2s, including those of other E. coli strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli]
<Options>: A: enterobacter aerogenes (aka klebsiella aerogenes)
B: escherichia coli (escherichia/shigella coli) (aka escherichia coli)
C: entamoeba coli
D: escherichia coli nissle 1917 (escherichia coli strain nissle 1917) (aka escherichia coli nissle 1917)
E: escherichia
F: None of the above. | [B] |
<Instruct>: Given the context 'This is in contrast to the more typical alanine found at this position in most bacterial RF2s, including those of other E. coli strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli]
<Options>: A: escherichia
B: entamoeba coli
C: escherichia coli nissle 1917 (escherichia coli strain nissle 1917) (aka escherichia coli nissle 1917)
D: enterobacter aerogenes (aka klebsiella aerogenes)
E: None of the above. | [E] |
<Instruct>: Given the context 'Inactivation of rluD in E. coli strains containing the prfB allele from E. coli B or in Salmonella enterica, both carrying an RF2 with Ala246, has negligible effects on growth, termination, or ribosome function.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli; e. coli b; salmonella enterica]
<Options>: A: salmonella enterica (salmonella enterica ser. choleraesuis) (aka salmonella enterica)
B: bacterium coli (aka escherichia coli)
C: escherichia
D: bacillus enteritidis (aka salmonella enterica subsp. enterica serovar enteritidis)
E: escherichia coli (strain b) (aka escherichia coli b)
F: escherichia coli b15
G: escherichia coli b (escherichia coli (strain b)) (aka escherichia coli b)
H: salmonella enterica i (aka salmonella enterica subsp. enterica)
I: entamoeba coli
J: escherichia coli b85
K: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
L: salmonella
M: salmonella enterica serovar typhisuis (aka salmonella enterica subsp. enterica serovar typhisuis)
N: None of the above. | [B; B; A] |
<Instruct>: Given the context 'Inactivation of rluD in E. coli strains containing the prfB allele from E. coli B or in Salmonella enterica, both carrying an RF2 with Ala246, has negligible effects on growth, termination, or ribosome function.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli; e. coli b; salmonella enterica]
<Options>: A: escherichia
B: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
C: salmonella
D: escherichia coli 9.1796
E: bacillus coli (aka escherichia coli)
F: escherichia coli 99.1762
G: salmonella enterica (salmonella enterica ser. choleraesuis) (aka salmonella enterica)
H: salmonella enterica i (aka salmonella enterica subsp. enterica)
I: escherichia coli b15
J: e. coli w (aka escherichia coli w)
K: salmonella enteritidis (aka salmonella enterica subsp. enterica serovar enteritidis)
L: escherichia coli c
M: salmonella enterica subsp. enterica serovar abortus (salmonella abortus) (aka salmonella enterica subsp. enterica serovar abortus)
N: None of the above. | [E; E; G] |
<Instruct>: Given the context 'Inactivation of rluD in E. coli strains containing the prfB allele from E. coli B or in Salmonella enterica, both carrying an RF2 with Ala246, has negligible effects on growth, termination, or ribosome function.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli; e. coli b; salmonella enterica]
<Options>: A: escherichia coli b86
B: salmonella typhisuis (aka salmonella enterica subsp. enterica serovar typhisuis)
C: escherichia coli 9.1796
D: salmonella choleraesuis (aka salmonella enterica)
E: escherichia coli (escherichia/shigella coli) (aka escherichia coli)
F: bacillus typhimurium (aka salmonella enterica subsp. enterica serovar typhimurium)
G: entamoeba coli
H: salmonella
I: 'escherichia faecalis' (aka escherichia faecalis)
J: salmonella enterica subsp. enterica serovar agona (salmonella agona) (aka salmonella enterica subsp. enterica serovar agona)
K: escherichia coli b (escherichia coli (strain b)) (aka escherichia coli b)
L: e. coli w (aka escherichia coli w)
M: None of the above. | [E; E; D] |
<Instruct>: Given the context 'The results indicate that, in contrast to those in wild bacteria, termination functions in E. coli K-12 strains carrying a partially defective RF2 protein are especially susceptible to perturbation of ribosome-RF interactions, such as that caused by loss of h69 Psi modifications.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli k-12]
<Options>: A: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
B: escherichia
C: escherichia coli 9.1796
D: e. coli (aka escherichia coli)
E: escherichia coli 97.1742
F: None of the above. | [D] |
<Instruct>: Given the context 'The results indicate that, in contrast to those in wild bacteria, termination functions in E. coli K-12 strains carrying a partially defective RF2 protein are especially susceptible to perturbation of ribosome-RF interactions, such as that caused by loss of h69 Psi modifications.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [e. coli k-12]
<Options>: A: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
B: escherichia coli 97.1742
C: escherichia coli 9.1796
D: escherichia
E: None of the above. | [E] |
<Instruct>: Given the context 'Fur negatively regulates hns and is required for the expression of HilA and virulence in Salmonella enterica serovar Typhimurium.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [salmonella enterica]
<Options>: A: salmonella abortus (aka salmonella enterica subsp. enterica serovar abortus)
B: salmonella
C: salmonella paratyphi (aka salmonella enterica subsp. enterica serovar paratyphi a)
D: salmonella enterica serovar typhimurium (aka salmonella enterica subsp. enterica serovar typhimurium)
E: salmonella enterica (salmonella enterica ser. choleraesuis) (aka salmonella enterica)
F: None of the above. | [E] |
<Instruct>: Given the context 'We report here that Fur is required for virulence in Salmonella enterica serovar Typhimurium and that Fur is required for the activation of hilA, as well as of other HilA-dependent genes, invF and sipC. The Fur-dependent regulation of hilA was independent of PhoP, a known repressor of hilA. Instead, the expression of the gene coding for the histone-like protein, hns, was significantly derepressed in the fur mutant.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [salmonella enterica]
<Options>: A: salmonella cholerae-suis (aka salmonella enterica)
B: salmonella paratyphi (aka salmonella enterica subsp. enterica serovar paratyphi a)
C: salmonella enterica serovar typhi (aka salmonella enterica subsp. enterica serovar typhi)
D: salmonella enterica i (aka salmonella enterica subsp. enterica)
E: salmonella abortus (aka salmonella enterica subsp. enterica serovar abortus)
F: None of the above. | [A] |
<Instruct>: Given the context 'argC Orthologs from Rhizobiales show diverse profiles of transcriptional efficiency and functionality in Sinorhizobium meliloti.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sinorhizobium meliloti]
<Options>: A: sinorhizobium arboris (sinorhizobium arboris nick et al. 1999) (aka sinorhizobium arboris)
B: sinorhizobium meliloti usda 1002
C: sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994 (aka sinorhizobium meliloti)
D: sinorhizobium meliloti kh35c
E: sinorhizobium meliloti kh12g
F: None of the above. | [C] |
<Instruct>: Given the context 'We evaluated the transcriptional expression and metabolic performance of ortholog substitution complementing a Sinorhizobium meliloti argC mutant with argC from Rhizobiales (Agrobacterium tumefaciens, Rhizobium etli, and Mesorhizobium loti).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sinorhizobium meliloti; agrobacterium tumefaciens; rhizobium etli; mesorhizobium loti]
<Options>: A: rhizobium tibeticum
B: sinorhizobium meliloti m30
C: neomesorhizobium albiziae (aka mesorhizobium albiziae)
D: 'agrobacterium aurantiacum' (aka agrobacterium aurantiacum)
E: rhizobium endolithicum (aka pseudorhizobium endolithicum)
F: metarhizobium album (rhizobium album) (aka metarhizobium album)
G: rhizobium lentis
H: sinorhizobium meliloti usda 1021
I: agrobacterium tumefaciens (strain b2a)
J: rhizobium aquaticum
K: agrobacterium tumefaciens genomovar g8 (aka agrobacterium fabrum)
L: rhizobium albus
M: ensifer meliloti (aka sinorhizobium meliloti)
N: rhizobium loti (aka mesorhizobium loti)
O: phytomyxa leguminosarum (aka rhizobium leguminosarum)
P: rhizobium endophyticum
Q: ensifer meliloti wsm4191 (aka sinorhizobium medicae)
R: rhizobium etli
S: agrobacterium fabacearum (aka agrobacterium tumefaciens)
T: agrobacterium pusense (rhizobium pusense) (aka agrobacterium pusense)
U: None of the above. | [M; S; R; N] |
<Instruct>: Given the context 'We evaluated the transcriptional expression and metabolic performance of ortholog substitution complementing a Sinorhizobium meliloti argC mutant with argC from Rhizobiales (Agrobacterium tumefaciens, Rhizobium etli, and Mesorhizobium loti).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sinorhizobium meliloti; agrobacterium tumefaciens; rhizobium etli; mesorhizobium loti]
<Options>: A: sinorhizobium meliloti kh30a
B: sinorhizobium meliloti (sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994) (aka sinorhizobium meliloti)
C: sinorhizobium meliloti m30
D: agrobacterium fabacearum (aka agrobacterium tumefaciens)
E: agrobacterium fabrum (agrobacterium tumefaciens genomovar g8) (aka agrobacterium fabrum)
F: rhizobium gallicum
G: sinorhizobium meliloti kh16b
H: agrobacterium leguminum
I: agrobacterium tumefaciens (strain apple 185)
J: mesorhizobium loti (rhizobium loti) (aka mesorhizobium loti)
K: sinorhizobium meliloti kh35c
L: rhizobium altiplani
M: mesorhizobium japonicum
N: rhizobium tibeticum
O: agrobacterium tumefaciens (strain b2a)
P: bradyrhizobium vignae
Q: rhizobium fabae
R: mesorhizobium sophorae
S: rhizobium etli
T: rhizobium taeanense ('rhizobium taeanense') (aka rhizobium taeanense)
U: None of the above. | [B; D; S; J] |
<Instruct>: Given the context 'We evaluated the transcriptional expression and metabolic performance of ortholog substitution complementing a Sinorhizobium meliloti argC mutant with argC from Rhizobiales (Agrobacterium tumefaciens, Rhizobium etli, and Mesorhizobium loti).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sinorhizobium meliloti; agrobacterium tumefaciens; rhizobium etli; mesorhizobium loti]
<Options>: A: sinorhizobium medicae (sinorhizobium medicae rome et al. 1996) (aka sinorhizobium medicae)
B: rhizobium gallicum
C: mesorhizobium plurifarium
D: mesorhizobium loti (rhizobium loti) (aka mesorhizobium loti)
E: sinorhizobium meliloti kh12g
F: sinorhizobium meliloti (sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994) (aka sinorhizobium meliloti)
G: agrobacterium tumefaciens (strain apple 185)
H: neomesorhizobium albiziae (aka mesorhizobium albiziae)
I: agrobacterium tumefaciens (agrobacterium tumefaciens (smith and townsend 1907) conn 1942 (approved lists 1980)) (aka agrobacterium tumefaciens)
J: rhizobium zeae
K: rhizobium taeanense ('rhizobium taeanense') (aka rhizobium taeanense)
L: agrobacterium leguminum
M: rhizobium etli
N: agrobacterium tumefaciens genomovar g8 (aka agrobacterium fabrum)
O: mesorhizobium sophorae
P: rhizobium albus
Q: rhizobium mayense
R: sinorhizobium meliloti kh16b
S: agrobacterium radiobacter (beijerinck and van delden 1902) conn 1942 (approved lists 1980) (aka agrobacterium radiobacter)
T: sinorhizobium arboris (sinorhizobium arboris nick et al. 1999) (aka sinorhizobium arboris)
U: None of the above. | [F; I; M; D] |
<Instruct>: Given the context 'We evaluated the transcriptional expression and metabolic performance of ortholog substitution complementing a Sinorhizobium meliloti argC mutant with argC from Rhizobiales (Agrobacterium tumefaciens, Rhizobium etli, and Mesorhizobium loti).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sinorhizobium meliloti; agrobacterium tumefaciens; rhizobium etli; mesorhizobium loti]
<Options>: A: 'agrobacterium aurantiacum' (aka agrobacterium aurantiacum)
B: rhizobium rhizogenes (agrobacterium rhizogenes (riker et al. 1930) conn 1942 (approved lists 1980)) (aka rhizobium rhizogenes)
C: rhizobium binae
D: mesorhizobium argentiipisi
E: ensifer meliloti (aka sinorhizobium meliloti)
F: rhizobium meliloti (aka sinorhizobium meliloti)
G: agrobacterium tumefaciens (strain apple 185)
H: mesorhizobium loti (rhizobium loti) (aka mesorhizobium loti)
I: rhizobium etli
J: agrobacterium tumefaciens (strain b2a)
K: agrobacterium leguminum
L: rhizobium tibeticum
M: sinorhizobium meliloti kh35b
N: polymonas tumefaciens (aka agrobacterium tumefaciens)
O: rhizobium albus
P: rhizobium loti (aka mesorhizobium loti)
Q: sinorhizobium meliloti usda 1021
R: mesorhizobium delmotii
S: sinorhizobium meliloti kh35c
T: None of the above. | [E; N; I; P] |
<Instruct>: Given the context 'Strains were obtained carrying plasmids with argC orthologs expressed under the speB and argC (S. meliloti) and lac (Escherichia coli) promoters.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. meliloti; escherichia coli]
<Options>: A: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
B: escherichia coli 99.1762
C: escherichia coli 9.1796
D: solanum medicagineum
E: enterococcus coli (aka escherichia coli)
F: sinorhizobium meliloti m10
G: sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994 (aka sinorhizobium meliloti)
H: tychius meliloti
I: sinorhizobium meliloti usda 1021
J: vibrio coli (aka campylobacter coli)
K: None of the above. | [G; E] |
<Instruct>: Given the context 'Strains were obtained carrying plasmids with argC orthologs expressed under the speB and argC (S. meliloti) and lac (Escherichia coli) promoters.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. meliloti; escherichia coli]
<Options>: A: escherichia
B: escherichia coli 97.1742
C: vibrio coli (aka campylobacter coli)
D: sinorhizobium meliloti kh35c
E: sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994 (aka sinorhizobium meliloti)
F: enterococcus coli (aka escherichia coli)
G: gallotia galloti galloti (lacerta galloti galloti) (aka gallotia galloti galloti)
H: stenopterapion meliloti (apion meliloti) (aka stenopterapion meliloti)
I: peronospora meliloti
J: 'escherichia faecalis' (aka escherichia faecalis)
K: None of the above. | [E; F] |
<Instruct>: Given the context 'Optimal complementation was directly related to sequence similarity with S. meliloti, and was inversely related to species signature, with M. loti argC showing the poorest performance, followed by R. etli and A. tumefaciens.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. meliloti; m. loti; r. etli; a. tumefaciens]
<Options>: A: eristalis cerealis
B: megalithone tillyardi
C: rhizobium etli
D: agrobacterium fabrum (agrobacterium tumefaciens genomovar g8) (aka agrobacterium fabrum)
E: eryngium regnellii
F: sinorhizobium meliloti kh35b
G: morimus lethalis
H: peronospora meliloti
I: stenopterapion meliloti (apion meliloti) (aka stenopterapion meliloti)
J: tychius meliloti
K: mesorhizobium loti (rhizobium loti) (aka mesorhizobium loti)
L: marasmius graminis (aka marasmiellus graminis)
M: agrobacterium tumefaciens (strain apple 185)
N: sorosporium tumefaciens (aka anthracocystis tumefaciens)
O: eristalis horticola
P: rhizobium meliloti (aka sinorhizobium meliloti)
Q: agrobacterium tumefaciens (agrobacterium tumefaciens (smith and townsend 1907) conn 1942 (approved lists 1980)) (aka agrobacterium tumefaciens)
R: methylophilus luteus
S: erinella
T: agrobacterium aurantiacum ('agrobacterium aurantiacum') (aka agrobacterium aurantiacum)
U: None of the above. | [P; K; C; Q] |
<Instruct>: Given the context 'Optimal complementation was directly related to sequence similarity with S. meliloti, and was inversely related to species signature, with M. loti argC showing the poorest performance, followed by R. etli and A. tumefaciens.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. meliloti; m. loti; r. etli; a. tumefaciens]
<Options>: A: agrobacterium tumefaciens (strain 15955)
B: agrobacterium radiobacter (beijerinck and van delden 1902) conn 1942 (approved lists 1980) (aka agrobacterium radiobacter)
C: erigone ignobilis (aka erigonella ignobilis)
D: agrobacterium rhizogenes (riker et al. 1930) conn 1942 (approved lists 1980) (aka rhizobium rhizogenes)
E: eryngium regnellii
F: ensifer meliloti (aka sinorhizobium meliloti)
G: methylococcus luteus (aka methylobacter luteus)
H: methylophilus leisingerii (aka methylophilus leisingeri)
I: tychius meliloti
J: agrobacterium tumefaciens genomovar g1 (aka agrobacterium tumefaciens)
K: mycobacterium tilburgii
L: sorosporium tumefaciens (aka anthracocystis tumefaciens)
M: sinorhizobium medicae (sinorhizobium medicae rome et al. 1996) (aka sinorhizobium medicae)
N: sinorhizobium meliloti kh12g
O: reyranella terrae
P: megalura livius (aka marpesia livius)
Q: mesorhizobium loti (rhizobium loti) (aka mesorhizobium loti)
R: rhizobium etli
S: erinella
T: sinorhizobium meliloti usda 1002
U: None of the above. | [F; Q; R; J] |
<Instruct>: Given the context 'Optimal complementation was directly related to sequence similarity with S. meliloti, and was inversely related to species signature, with M. loti argC showing the poorest performance, followed by R. etli and A. tumefaciens.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. meliloti; m. loti; r. etli; a. tumefaciens]
<Options>: A: agrobacterium tumefaciens (strain b2a)
B: agrobacterium tumefaciens (strain 15955)
C: erica lignosa
D: agrobacterium tumefaciens genomovar g1 (aka agrobacterium tumefaciens)
E: microstomum lotti
F: macrophoma tumefaciens (aka diplodia tumefaciens)
G: megalura livius (aka marpesia livius)
H: apion meliloti (aka stenopterapion meliloti)
I: morimus lethalis
J: rhizobium etli
K: sinorhizobium medicae (sinorhizobium medicae rome et al. 1996) (aka sinorhizobium medicae)
L: rhodnius stali
M: marasmius graminis (aka marasmiellus graminis)
N: plenodomus meliloti
O: rhizobium loti (aka mesorhizobium loti)
P: thallarcha erotis
Q: ensifer meliloti (aka sinorhizobium meliloti)
R: tychius meliloti
S: erymus gracilis (leptacinus nilamburensis) (aka erymus gracilis)
T: sorosporium tumefaciens (aka anthracocystis tumefaciens)
U: None of the above. | [Q; O; J; D] |
<Instruct>: Given the context 'Optimal complementation was directly related to sequence similarity with S. meliloti, and was inversely related to species signature, with M. loti argC showing the poorest performance, followed by R. etli and A. tumefaciens.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. meliloti; m. loti; r. etli; a. tumefaciens]
<Options>: A: sorosporium tumefaciens (aka anthracocystis tumefaciens)
B: marasmius graminis (aka marasmiellus graminis)
C: agrobacterium fabrum (agrobacterium tumefaciens genomovar g8) (aka agrobacterium fabrum)
D: mesorhizobium loti (rhizobium loti) (aka mesorhizobium loti)
E: solanum medicagineum
F: eristalis horticola
G: rhizobium etli
H: lotus maroccanus
I: erica lignosa
J: ero leonina
K: agrobacterium rhizogenes (riker et al. 1930) conn 1942 (approved lists 1980) (aka rhizobium rhizogenes)
L: plenodomus meliloti
M: thallarcha erotis
N: sinorhizobium meliloti (dangeard 1926) de lajudie et al. 1994 (aka sinorhizobium meliloti)
O: mycobacterium lentiflavum
P: agrobacterium leguminum
Q: sinorhizobium medicae (sinorhizobium medicae rome et al. 1996) (aka sinorhizobium medicae)
R: gallotia galloti galloti (lacerta galloti galloti) (aka gallotia galloti galloti)
S: megalura livius (aka marpesia livius)
T: agrobacterium fabacearum (aka agrobacterium tumefaciens)
U: None of the above. | [N; D; G; T] |
<Instruct>: Given the context 'Complete genome sequence of strain HTCC2170, a novel member of the genus Maribacter in the family Flavobacteriaceae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [htcc2170]
<Options>: A: gamma proteobacterium htcc230
B: marine gamma proteobacterium htcc2120
C: flavobacteriales bacterium htcc2170 (aka maribacter sp. htcc2170)
D: bacterium htcc4120
E: bacterium htcc8032
F: None of the above. | [C] |
<Instruct>: Given the context 'Complete genome sequence of strain HTCC2170, a novel member of the genus Maribacter in the family Flavobacteriaceae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [htcc2170]
<Options>: A: bacterium htcc4120
B: bacterium htcc8032
C: marine gamma proteobacterium htcc2120
D: gamma proteobacterium htcc230
E: None of the above. | [E] |
<Instruct>: Given the context 'Strain HTCC2170 was isolated from surface waters off the Oregon coast using dilution-to-extinction culturing.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [htcc2170]
<Options>: A: hypertropha tortriciformis (heliodes tortriciformis) (aka hypertropha tortriciformis)
B: marine gamma proteobacterium htcc2120
C: flavobacteriales bacterium htcc2170 (aka maribacter sp. htcc2170)
D: rhodobacterales bacterium htcc2177
E: bacterium htcc8020
F: None of the above. | [C] |
<Instruct>: Given the context 'Here, we present the finished genome sequence of a marine bacterium, Maribacter sp. strain HTCC2170.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [marine bacterium; maribacter sp. strain htcc2170]
<Options>: A: marine bacterium
B: marinobacter sp. h-292
C: marinobacter aquaticus
D: unknown marine bacterium (aka uncultured marine bacterium)
E: marine bacterium 13691
F: flavobacteriales bacterium htcc2170 (aka maribacter sp. htcc2170)
G: maribacter sp. rcc2395
H: drinking water bacterium
I: maribacter sp. th_r10
J: maribacter sp. ec-hk151
K: None of the above. | [D; F] |
<Instruct>: Given the context 'Here, we present the finished genome sequence of a marine bacterium, Maribacter sp. strain HTCC2170.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [marine bacterium; maribacter sp. strain htcc2170]
<Options>: A: drinking water bacterium
B: maribacter sp. bsw21908
C: maribacter sp. htcc2170 (flavobacteriales bacterium htcc2170) (aka maribacter sp. htcc2170)
D: marinobacter sp. h-286
E: maribacter luteus
F: unidentified marine proteobacterium
G: maribacter sp. rcc2395
H: unknown marine bacterium (aka uncultured marine bacterium)
I: moraxellaceae bacterium
J: maribacter sp. hs
K: None of the above. | [H; C] |
<Instruct>: Given the context 'HTCC2170 is predicted to be a facultatively aerobic chemoorganotroph that, based on genomic sequence analysis, is capable of macromolecule degradation and anaerobic respiration.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [htcc2170]
<Options>: A: rhodobacterales bacterium htcc2177
B: flavobacteriales bacterium htcc2170 (aka maribacter sp. htcc2170)
C: unidentified marine bacterial clone ht1901
D: bacterium htcc4120
E: unidentified marine bacterial clone ht1902
F: None of the above. | [B] |
<Instruct>: Given the context 'Flavobacterium ponti sp. nov., isolated from seawater.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [flavobacterium ponti sp. nov.]
<Options>: A: flavobacterium magnum
B: flavobacterium indicum
C: flavobacterium panacis
D: flavobacterium ponti
E: flavobacterium effusum
F: None of the above. | [D] |
<Instruct>: Given the context 'A Gram-stain-negative, non-flagellated, non-gliding, yellow-pigmented and rod-shaped bacterial strain, designated GSW-R14(T), was isolated from seawater of Geoje Island in the South Sea, Korea.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [gsw-r14]
<Options>: A: gateway binary vector pgwb14
B: agrostidodinae
C: gas vacuolate str. 214.6
D: gateway binary vector r4pgwb522
E: barley straw oomycete gs-2
F: None of the above. | [F] |
<Instruct>: Given the context 'Strain GSW-R14(T) grew optimally at 25 ^0C, at pH 7.0-8.0 and in the presence of 2 % (w/v) NaCl.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [gsw-r14]
<Options>: A: gossypium mustelinium symptomless alphasatellite
B: sarga stipoidea (aka sorghum stipoideum)
C: sorghum verticilliflorum (aka sorghum arundinaceum)
D: gossypium darwinii symptomless virus
E: sergentomyia affinis vorax
F: None of the above. | [F] |
<Instruct>: Given the context 'Phylogenetic analyses based on 16S rRNA gene sequences showed that strain GSW-R14(T) belonged to the genus Flavobacterium, joining Flavobacterium gelidilacus LMG 21477(T) by a bootstrap resampling value of 100 %.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [gsw-r14; flavobacterium gelidilacus]
<Options>: A: flavobacterium effusum
B: flavobacterium verecundum
C: barley straw oomycete gs-2
D: flavobacterium fluviatile
E: flavobacterium gelidilacus
F: agrostidodinae
G: gateway binary vector r4pgwb522
H: rhizobiaceae bacterium gws-bw-h42m
I: flavobacterium laiguense
J: gateway binary vector r4pgwb616
K: None of the above. | [K; E] |
<Instruct>: Given the context 'Phylogenetic analyses based on 16S rRNA gene sequences showed that strain GSW-R14(T) belonged to the genus Flavobacterium, joining Flavobacterium gelidilacus LMG 21477(T) by a bootstrap resampling value of 100 %.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [gsw-r14; flavobacterium gelidilacus]
<Options>: A: flavobacterium laiguense
B: gelidibacter flavus
C: gateway binary vector r4pgwb522
D: flavobacterium branchiicola
E: gossypium darwinii symptomless alphasatellite
F: gateway binary vector r4pgwb716
G: rhizobiaceae bacterium gws-bw-h42m
H: flavobacterium gelidilacus
I: gallegoides
J: flavobacterium terrigena
K: None of the above. | [K; H] |
<Instruct>: Given the context 'Strain GSW-R14(T) exhibited 97.6 % 16S rRNA gene sequence similarity to F. gelidilacus LMG 21477(T) and similarities of 91.2-95.2 % to other members of the genus Flavobacterium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [gsw-r14; f. gelidilacus]
<Options>: A: fusarium temperatum
B: fusarium acetilerea (aka fusicolla acetilerea)
C: fusarium subflagellisporum
D: spodoptera frugiperda rhabdovirus
E: barley straw oomycete gs-2
F: flavobacterium gelidilacus
G: agrostidinae
H: fusarium graminearum (gibberella zeae (schwein.) petch, 1936) (aka fusarium graminearum)
I: gallegoides
J: gateway binary vector r4pgwb522
K: None of the above. | [K; F] |
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