instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
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<Instruct>: Given the context 'The type strain of Methanoregula boonei is 6A8(T)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [methanoregula boonei; 6a8]
<Options>: A: ava
B: methanobacterium mobilis (aka methanomicrobium mobile)
C: methanococcus voltaei (aka methanococcus voltae)
D: methanobacterium oryzae
E: uncultured archaeon cro-6a
F: h6n6 subtype
G: methanococcus igneus (aka methanotorris igneus)
H: candidatus methanoregula boonei (aka methanoregula boonei)
I: human associated cyclovirus 6
J: bacterium 6bk
K: None of the above. | [H; H] |
<Instruct>: Given the context 'Identification of the structural proteins of VP1 and VP2 of a novel mud crab dicistrovirus.
Mud crab dicistrovirus (MCDV), a newly identified single-stranded positive RNA virus, is an important pathogen that causes serious economic losses to mud crab aquaculture.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mud crab dicistrovirus; mcdv; mud crab]
<Options>: A: dicentrarchus labrax virus
B: orange mud crab (aka scylla olivacea)
C: dicentrarchus labrax betanodavirus
D: rainbow smelt (aka osmerus mordax)
E: mud sole (aka austroglossus pectoralis)
F: megalocytivirus
G: marek's disease virus (mdv) (aka gallid alphaherpesvirus 2)
H: mud crab virus (mud crab dicistrovirus) (aka mud crab virus)
I: modv (aka modoc virus) (aka modoc virus)
J: giant mud crab (aka scylla serrata)
K: furrowed mud crab (aka panopeus occidentalis)
L: bat dicistrovirus
M: murine circovirus
N: apis dicistrovirus
O: cyvmv (aka croton yellow vein mosaic virus)
P: None of the above. | [H; H; J] |
<Instruct>: Given the context 'Identification of the structural proteins of VP1 and VP2 of a novel mud crab dicistrovirus.
Mud crab dicistrovirus (MCDV), a newly identified single-stranded positive RNA virus, is an important pathogen that causes serious economic losses to mud crab aquaculture.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mud crab dicistrovirus; mcdv; mud crab]
<Options>: A: mud sole (aka austroglossus pectoralis)
B: giant mud crab (aka scylla serrata)
C: rodent dicistro-like virus
D: maciel virus
E: atlantic mud crab (aka panopeus herbstii)
F: midge dicistrovirus
G: electric ant dicistrovirus
H: scpmv (aka southern cowpea mosaic virus)
I: rainbow smelt (aka osmerus mordax)
J: mud crab dicistrovirus (aka mud crab virus)
K: atlantic horseshoe crab (aka limulus polyphemus)
L: marigold mosaic virus
M: lone star tick dicistrovirus
N: murine coronavirus
O: carmv (aka carnation mottle virus)
P: None of the above. | [J; J; B] |
<Instruct>: Given the context 'Identification of the structural proteins of VP1 and VP2 of a novel mud crab dicistrovirus.
Mud crab dicistrovirus (MCDV), a newly identified single-stranded positive RNA virus, is an important pathogen that causes serious economic losses to mud crab aquaculture.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mud crab dicistrovirus; mcdv; mud crab]
<Options>: A: cyvmv (aka croton yellow vein mosaic virus)
B: purple mud crab (aka scylla tranquebarica)
C: mdsghv (aka muscavirus musdomesticae)
D: maclura mosaic virus (macmv) (aka maclura mosaic virus)
E: reticulitermes speratus dicistrovirus
F: mud crabs (aka xanthoidea)
G: mudhopper letovirus
H: minute virus of canines (aka canine minute virus)
I: murine coronavirus
J: mud crab virus (mud crab dicistrovirus) (aka mud crab virus)
K: sand crab (aka portunus pelagicus)
L: electric ant dicistrovirus
M: dicentrarchus labrax betanodavirus
N: gulf stone crab (aka menippe adina)
O: giant mud crab (aka scylla serrata)
P: None of the above. | [J; J; O] |
<Instruct>: Given the context 'In this study, MCDV was purified, and three structural proteins of MCDV were separated by SDS-PAGE.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mcdv]
<Options>: A: mercadeo virus (mecdv) (aka mercadeo virus)
B: marek's disease virus (mdv) (aka gallid alphaherpesvirus 2)
C: modv (aka modoc virus) (aka modoc virus)
D: canine minute virus (minute virus of canines) (aka canine minute virus)
E: cyvmv (aka croton yellow vein mosaic virus)
F: None of the above. | [F] |
<Instruct>: Given the context 'The results of immunogold transmission electron microscopy (IEM) revealed that the epitopes of the two structural proteins recognised by the MAbs were located at the outer surface of the virions, which suggested that the two structural proteins are MCDV capsid proteins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mcdv]
<Options>: A: mouyassue virus
B: macmv (aka maclura mosaic virus)
C: mdsghv (aka muscavirus musdomesticae)
D: maciel virus
E: murine circovirus
F: None of the above. | [F] |
<Instruct>: Given the context 'The identification of the two structural proteins of MCDV is useful for studying their functions, as well as the mechanism of infection and the pathogenesis of MCDV.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mcdv]
<Options>: A: murine circovirus
B: mouyassue virus
C: scpmv (aka southern cowpea mosaic virus)
D: mawson virus
E: murine coronavirus
F: None of the above. | [F] |
<Instruct>: Given the context 'Studies of polarized growth in S. cerevisiae have identified the protein components of the polarized growth machinery, that are conserved in other fungi.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. cerevisiae]
<Options>: A: saccharomyces rouxii (aka zygosaccharomyces rouxii)
B: saccharomyces fermentati (aka torulaspora delbrueckii)
C: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
D: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
E: megasphaera cerevisiae
F: None of the above. | [C] |
<Instruct>: Given the context 'However, over the past several years Agrobacteriumtumefaciens-mediated transformation (ATMT) has become the preferred genetic transformation method for an increasing number of fungi.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [agrobacteriumtumefaciens]
<Options>: A: agrobacterium oryzihabitans (aka rhizobium oryzihabitans)
B: agrobacterium vaccinii
C: phytomonas tumefaciens (aka agrobacterium tumefaciens)
D: agrobacterium aurantiacum ('agrobacterium aurantiacum') (aka agrobacterium aurantiacum)
E: agrobacterium tumefaciens genomovar g8 (aka agrobacterium fabrum)
F: None of the above. | [C] |
<Instruct>: Given the context 'Using OSCAR we generated eight targeted deletion constructs and used two of them to generate deletion mutants in Verticillium dahliae by ATMT.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [verticillium dahliae]
<Options>: A: puccinia bassiae
B: verticillium zeosporum (aka drechmeria zeospora)
C: alternaria hordeicola
D: verticillium coccosporum (aka [verticillium] coccosporum)
E: verticillium dahliae
F: None of the above. | [E] |
<Instruct>: Given the context 'Overexpression of the trichodiene synthase gene tri5 increases trichodermin production and antimicrobial activity in Trichoderma brevicompactum.
Trichoderma brevicompactum produces trichodermin, a simple trichothecene-type toxin that shares the first steps of the sesquiterpene biosynthetic pathway with other phytotoxic trichothecenes from Fusarium spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [trichoderma brevicompactum; fusarium spp]
<Options>: A: trichoderma ingratum
B: trichoderma breve
C: trichoderma brevicompactum
D: fusarium sp. pt
E: trichoderma liberatum
F: fusarium sp. (bisifusarium sp.) (aka fusarium sp.)
G: fusarium sp. di
H: fusarium sp. f8
I: fusarium sp. icmp 1970
J: trichoderma gliocladium
K: None of the above. | [C; F] |
<Instruct>: Given the context 'Overexpression of the trichodiene synthase gene tri5 increases trichodermin production and antimicrobial activity in Trichoderma brevicompactum.
Trichoderma brevicompactum produces trichodermin, a simple trichothecene-type toxin that shares the first steps of the sesquiterpene biosynthetic pathway with other phytotoxic trichothecenes from Fusarium spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [trichoderma brevicompactum; fusarium spp]
<Options>: A: fusarium aff. graminearum
B: fusarium sp. f-d
C: trichoderma rugosum
D: fusarium sp. (bisifusarium sp.) (aka fusarium sp.)
E: fusarium sp. ma 1854
F: talaromyces brevicompactus (aka hamigera brevicompacta)
G: trichoderma brevicompactum
H: fusarium sp. pt
I: trichoderma gliocladium
J: trichoderma bombaxalis
K: None of the above. | [G; D] |
<Instruct>: Given the context 'Trichodiene synthase catalyses the conversion of farnesyl pyrophosphate to trichodiene and it is encoded by the tri5 gene that was cloned and analysed functionally by homologous overexpression in T. brevicompactum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. brevicompactum]
<Options>: A: trichoderma breve
B: thermobacterium cereale (aka lactobacillus delbrueckii)
C: fusarium brevicatenulatum
D: trichoderma brevicompactum
E: bovistella radicata
F: None of the above. | [D] |
<Instruct>: Given the context 'Agar diffusion assays with these two purified metabolites from the tri5-overexpressing transformant T. brevicompactum Tb41tri5 showed that only trichodermin had antifungal activity against Saccharomyces cerevisiae, Kluyveromyces marxianus, Candida albicans, Candida glabrata, Candida tropicalis and Aspergillus fumigatus, in most cases such activity being higher than that observed for amphotericin B and hygromycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. brevicompactum; saccharomyces cerevisiae; kluyveromyces marxianus; candida albicans]
<Options>: A: trichoderma breve
B: kluyveromyces
C: staphylotrichum brevistipitatum
D: kluyveromyces drosophilarum (aka kluyveromyces lactis)
E: fibroporia albicans
F: oidium albicans (aka candida albicans)
G: trichonta brevicauda
H: thermobacterium cereale (aka lactobacillus delbrueckii)
I: trichoderma brevicompactum
J: saccharomyces fermentati (aka torulaspora delbrueckii)
K: kluyveromyces osmophilus (aka zygosaccharomyces osmophilus)
L: kluyveromyces cicerisporus (aka kluyveromyces marxianus)
M: saccharomyces ovalis (aka malassezia furfur)
N: farigia albicans
O: saccharomyces oviformis (aka saccharomyces cerevisiae)
P: saccharomyces albicans (aka candida albicans)
Q: argyra albicans
R: saccharomyces pasteurianus (aka saccharomyces pastorianus)
S: kluyveromyces yarrowii (aka vanderwaltozyma yarrowii)
T: athletes albicans
U: None of the above. | [I; O; L; F] |
<Instruct>: Given the context 'Agar diffusion assays with these two purified metabolites from the tri5-overexpressing transformant T. brevicompactum Tb41tri5 showed that only trichodermin had antifungal activity against Saccharomyces cerevisiae, Kluyveromyces marxianus, Candida albicans, Candida glabrata, Candida tropicalis and Aspergillus fumigatus, in most cases such activity being higher than that observed for amphotericin B and hygromycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. brevicompactum; saccharomyces cerevisiae; kluyveromyces marxianus; candida albicans]
<Options>: A: megasphaera cerevisiae
B: kluyveromyces yarrowii (aka vanderwaltozyma yarrowii)
C: trichonta brevicauda
D: trichoderma brevicompactum
E: mycotorula albicans (aka candida albicans)
F: trichoderma brevicompactum 0248
G: kluyveromyces
H: athletes albicans
I: saccharomyces italicus (aka saccharomyces cerevisiae)
J: saccharomyces marxianus (aka kluyveromyces marxianus)
K: xylesthia albicans
L: staphylotrichum brevistipitatum
M: saccharomyces fermentati (aka torulaspora delbrueckii)
N: kluyveromyces osmophilus (aka zygosaccharomyces osmophilus)
O: fibroporia albicans
P: tabrizicola blastica (aka fuscovulum blasticum)
Q: argyra albicans
R: guilliermondella marxiana (aka kluyveromyces marxianus)
S: saccharomyces globosus (aka saccharomyces uvarum)
T: kluyveromyces lactis (kluyveromyces marxianus var. drosophilarum) (aka kluyveromyces lactis)
U: None of the above. | [D; I; R; E] |
<Instruct>: Given the context 'Agar diffusion assays with these two purified metabolites from the tri5-overexpressing transformant T. brevicompactum Tb41tri5 showed that only trichodermin had antifungal activity against Saccharomyces cerevisiae, Kluyveromyces marxianus, Candida albicans, Candida glabrata, Candida tropicalis and Aspergillus fumigatus, in most cases such activity being higher than that observed for amphotericin B and hygromycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. brevicompactum; saccharomyces cerevisiae; kluyveromyces marxianus; candida albicans]
<Options>: A: kluyveromyces yarrowii (aka vanderwaltozyma yarrowii)
B: candona albicans (aka pseudocandona albicans)
C: saccharomyces albicans (aka candida albicans)
D: trichoderma brevicrassum
E: fibroporia albicans
F: athletes albicans
G: kluyveromyces
H: cyathopsis albicans (styphelia albicans) (aka cyathopsis albicans)
I: saccharomyces globosus (aka saccharomyces uvarum)
J: trichoderma brevicompactum
K: colletotrichum bromeliacearum
L: saccharomyces ovalis (aka malassezia furfur)
M: zygosaccharomyces marxianus (aka kluyveromyces marxianus)
N: trichoderma breve
O: kluyveromyces osmophilus (aka zygosaccharomyces osmophilus)
P: saccharomyces italicus (aka saccharomyces cerevisiae)
Q: trichoderma barbatum
R: kluyveromyces lactis (kluyveromyces marxianus var. drosophilarum) (aka kluyveromyces lactis)
S: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
T: None of the above. | [J; P; M; C] |
<Instruct>: Given the context 'Agar diffusion assays with these two purified metabolites from the tri5-overexpressing transformant T. brevicompactum Tb41tri5 showed that only trichodermin had antifungal activity against Saccharomyces cerevisiae, Kluyveromyces marxianus, Candida albicans, Candida glabrata, Candida tropicalis and Aspergillus fumigatus, in most cases such activity being higher than that observed for amphotericin B and hygromycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. brevicompactum; saccharomyces cerevisiae; kluyveromyces marxianus; candida albicans]
<Options>: A: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
B: saccharomyces ovalis (aka malassezia furfur)
C: kluyveromyces osmophilus (aka zygosaccharomyces osmophilus)
D: trichoderma brevicompactum
E: saccharomyces globosus (aka saccharomyces uvarum)
F: saccharomyces albicans (aka candida albicans)
G: fibroporia albicans
H: kluyveromyces yarrowii (aka vanderwaltozyma yarrowii)
I: kluyveromyces lactis (kluyveromyces marxianus var. drosophilarum) (aka kluyveromyces lactis)
J: athletes albicans
K: candona albicans (aka pseudocandona albicans)
L: cyathopsis albicans (styphelia albicans) (aka cyathopsis albicans)
M: colletotrichum bromeliacearum
N: trichoderma breve
O: trichoderma brevicrassum
P: trichoderma barbatum
Q: kluyveromyces
R: saccharomyces italicus (aka saccharomyces cerevisiae)
S: None of the above. | [D; R; S; F] |
<Instruct>: Given the context 'Agar diffusion assays with these two purified metabolites from the tri5-overexpressing transformant T. brevicompactum Tb41tri5 showed that only trichodermin had antifungal activity against Saccharomyces cerevisiae, Kluyveromyces marxianus, Candida albicans, Candida glabrata, Candida tropicalis and Aspergillus fumigatus, in most cases such activity being higher than that observed for amphotericin B and hygromycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. brevicompactum; saccharomyces cerevisiae; kluyveromyces marxianus; candida albicans]
<Options>: A: kluyveromyces drosophilarum (aka kluyveromyces lactis)
B: kluyveromyces yarrowii (aka vanderwaltozyma yarrowii)
C: trichoderma brevicompactum
D: saccharomyces hansenii (aka debaryomyces hansenii)
E: saccharomyces marxianus (aka kluyveromyces marxianus)
F: ozoroa albicans
G: bovistella radicata
H: fibroporia albicans
I: kluyveromyces cicerisporus (aka kluyveromyces marxianus)
J: kluyveromyces osmophilus (aka zygosaccharomyces osmophilus)
K: saccharomyces rouxii (aka zygosaccharomyces rouxii)
L: mycoderma cerevisiae (aka saccharomyces cerevisiae)
M: colletotrichum bromeliacearum
N: saccharomyces arboricola (saccharomyces arboricola f.y. bai & s.a. wang, 2008) (aka saccharomyces arboricola)
O: mycotorula albicans (aka candida albicans)
P: argyra albicans
Q: brachybacterium horti
R: merimbla brevicompactum (aka hamigera brevicompacta)
S: farigia albicans
T: kluyveromyces
U: None of the above. | [C; L; I; O] |
<Instruct>: Given the context 'Agar diffusion assays with these two purified metabolites from the tri5-overexpressing transformant T. brevicompactum Tb41tri5 showed that only trichodermin had antifungal activity against Saccharomyces cerevisiae, Kluyveromyces marxianus, Candida albicans, Candida glabrata, Candida tropicalis and Aspergillus fumigatus, in most cases such activity being higher than that observed for amphotericin B and hygromycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [candida glabrata; candida tropicalis; aspergillus fumigatus]
<Options>: A: aspergillus terricola
B: robynsia glabrata
C: aspergillus rubrum (aka aspergillus ruber)
D: aspergillus cerealis
E: buchnera glabrata
F: aspergillus aureus
G: truncospora tropicalis
H: acoma glabrata
I: terminalia glabrata
J: candida glabrata (aka nakaseomyces glabratus)
K: neosartorya fumigata (aka aspergillus fumigatus)
L: rhinocladiella tropicalis
M: chitinophaga tropicalis
N: clavulinopsis tropicalis
O: monilia tropicalis (aka candida tropicalis)
P: None of the above. | [J; O; K] |
<Instruct>: Given the context 'Agar diffusion assays with these two purified metabolites from the tri5-overexpressing transformant T. brevicompactum Tb41tri5 showed that only trichodermin had antifungal activity against Saccharomyces cerevisiae, Kluyveromyces marxianus, Candida albicans, Candida glabrata, Candida tropicalis and Aspergillus fumigatus, in most cases such activity being higher than that observed for amphotericin B and hygromycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [candida glabrata; candida tropicalis; aspergillus fumigatus]
<Options>: A: clavulinopsis tropicalis
B: torulopsis glabrata (aka nakaseomyces glabratus)
C: kallstroemia glabrata
D: hypochaeris tropicalis
E: gaesischia glabrata
F: aspergillus asper (aspergillus asperus) (aka aspergillus asper)
G: oidium tropicale (aka candida tropicalis)
H: aspergillus terricola
I: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
J: zanclospora tropicalis (chaetosphaeria tropicalis) (aka zanclospora tropicalis)
K: mychothenus tropicalis
L: scrophularia glabrata
M: aspergillus aerius
N: robynsia glabrata
O: neosartorya fumigata (aka aspergillus fumigatus)
P: None of the above. | [B; G; O] |
<Instruct>: Given the context 'Agar diffusion assays with these two purified metabolites from the tri5-overexpressing transformant T. brevicompactum Tb41tri5 showed that only trichodermin had antifungal activity against Saccharomyces cerevisiae, Kluyveromyces marxianus, Candida albicans, Candida glabrata, Candida tropicalis and Aspergillus fumigatus, in most cases such activity being higher than that observed for amphotericin B and hygromycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [candida glabrata; candida tropicalis; aspergillus fumigatus]
<Options>: A: clavulinopsis tropicalis
B: zanclospora tropicalis (chaetosphaeria tropicalis) (aka zanclospora tropicalis)
C: aspergillus aerius
D: aspergillus asper (aspergillus asperus) (aka aspergillus asper)
E: gaesischia glabrata
F: robynsia glabrata
G: scrophularia glabrata
H: kallstroemia glabrata
I: aspergillus terricola
J: mychothenus tropicalis
K: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
L: oidium tropicale (aka candida tropicalis)
M: torulopsis glabrata (aka nakaseomyces glabratus)
N: hypochaeris tropicalis
O: None of the above. | [M; L; O] |
<Instruct>: Given the context 'Agar diffusion assays with these two purified metabolites from the tri5-overexpressing transformant T. brevicompactum Tb41tri5 showed that only trichodermin had antifungal activity against Saccharomyces cerevisiae, Kluyveromyces marxianus, Candida albicans, Candida glabrata, Candida tropicalis and Aspergillus fumigatus, in most cases such activity being higher than that observed for amphotericin B and hygromycin.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [candida glabrata; candida tropicalis; aspergillus fumigatus]
<Options>: A: aspergillus aerius
B: wickerhamiella tropicalis
C: castellania tropicalis (aka candida tropicalis)
D: mychothenus tropicalis
E: candida glabrata (aka nakaseomyces glabratus)
F: aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884) (aka aspergillus oryzae)
G: aspergillus terricola
H: aspergillus fumigatus fresen., 1863 (aka aspergillus fumigatus)
I: rhinocladiella tropicalis
J: chaetosphaeria tropicalis (aka zanclospora tropicalis)
K: aspergillus aureus
L: mycotorula albicans (aka candida albicans)
M: buchnera glabrata
N: acoma glabrata
O: candida famata (aka debaryomyces hansenii)
P: None of the above. | [E; C; H] |
<Instruct>: Given the context 'Our results point to the significant role of tri5 in the production of trichodermin and in the antifungal activity of T. brevicompactum.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [t. brevicompactum]
<Options>: A: fusarium brevicaudatum
B: trichoderma barbatum
C: trichoderma brevicompactum
D: fusarium brevicatenulatum
E: trichoderma breve
F: None of the above. | [C] |
<Instruct>: Given the context 'We measured the growth rate on solid medium and found differences between species, with Microsporum gypseum CBS118893 having the fastest growth and Trichophyton rubrum CBS118892 the slowest.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [microsporum gypseum; trichophyton rubrum]
<Options>: A: muhlenbergia gypsophila
B: malbranchea gypsea
C: trichophyton rubrum var. flavum
D: microsporum gypseum (aka nannizzia gypsea)
E: spooneromyces microsporus
F: sabouraudites ruber (aka trichophyton rubrum)
G: microspongium globosum
H: trichophyton equinum
I: trichilia rubra
J: perrierophytum rubrum
K: None of the above. | [D; F] |
<Instruct>: Given the context 'We measured the growth rate on solid medium and found differences between species, with Microsporum gypseum CBS118893 having the fastest growth and Trichophyton rubrum CBS118892 the slowest.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [microsporum gypseum; trichophyton rubrum]
<Options>: A: arenaria gypsophiloides (aka eremogone gypsophiloides)
B: trichilia rubra
C: ankyropetalum gypsophiloides (aka gypsophila gypsophiloides)
D: trichophyton persicum
E: trichophyton bullosum
F: microsporum gypseum var. vinosum (aka nannizzia gypsea)
G: sabouraudites ruber (aka trichophyton rubrum)
H: trichophyton rubrum var. nigricans
I: microsporum equinum
J: sedum gypsophilum
K: None of the above. | [F; G] |
<Instruct>: Given the context 'Finally, we tested virulence in the Galleria mellonella (wax moth) larvae model but found the results variable.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [galleria mellonella; wax moth]
<Options>: A: gemmiger gallinarum
B: apis fragrans (aka bombus fragrans)
C: gallinago nigripennis
D: spodoptera frugiperda (fall armyworm) (aka spodoptera frugiperda)
E: galleria
F: galleria similis
G: greater wax moth (aka galleria mellonella)
H: silk moth (aka bombyx mori)
I: apis lucorum (aka bombus lucorum)
J: None of the above. | [G; G] |
<Instruct>: Given the context 'Finally, we tested virulence in the Galleria mellonella (wax moth) larvae model but found the results variable.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [galleria mellonella; wax moth]
<Options>: A: silk moth (aka bombyx mori)
B: gemmiger gallinarum
C: spodoptera frugiperda (fall armyworm) (aka spodoptera frugiperda)
D: apis fragrans (aka bombus fragrans)
E: gallinago nigripennis
F: apis lucorum (aka bombus lucorum)
G: galleria
H: galleria similis
I: None of the above. | [I; I] |
<Instruct>: Given the context 'Finally, we tested virulence in the Galleria mellonella (wax moth) larvae model but found the results variable.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [galleria mellonella; wax moth]
<Options>: A: gallinago nigripennis
B: corn earworm (aka helicoverpa zea)
C: domestic silkworm (aka bombyx mori)
D: apis lucorum (aka bombus lucorum)
E: coleophora gallipennella (tinea gallipennella) (aka coleophora gallipennella)
F: gemmiger gallinarum
G: galleria mellonella (phalaena mellonella) (aka galleria mellonella)
H: meleagris gallopavo (common turkey) (aka meleagris gallopavo)
I: apis campestris (aka bombus campestris)
J: None of the above. | [G; G] |
<Instruct>: Given the context 'Baculovirus cyclobutane pyrimidine dimer photolyases show a close relationship with lepidopteran host homologues.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [baculovirus]
<Options>: A: buchnera aphidicola (brachycaudus lucifugus)
B: bruthen virus
C: unidentified baculovirus (baculovirus sp.) (aka unidentified baculovirus)
D: spodoptera frugiperda granulovirus (spodoptera frugiperda betabaculovirus) (aka spodoptera frugiperda granulovirus)
E: bandavirus (banyangvirus) (aka bandavirus)
F: None of the above. | [C] |
<Instruct>: Given the context 'To get insight in the origin of baculovirus CPD photolyase (phr) genes, homologues in the lepidopteran insects Chrysodeixis chalcites, Spodoptera exigua and Trichoplusia ni were identified and characterized.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [baculovirus; chrysodeixis chalcites; spodoptera exigua; trichoplusia ni]
<Options>: A: spodoptera litura
B: meloidogyne exigua
C: chrysodeixis chalcites (phalaena chalcites) (aka chrysodeixis chalcites)
D: trichonectria
E: chrysococcyx basalis (chalcites basalis) (aka chrysococcyx basalis)
F: madia exigua (sclerocarpus exiguus) (aka madia exigua)
G: trichoderma fertile
H: dytiscus chalconatus (aka agabus chalconatus)
I: bombus terricola
J: niesslia exigua (eriosphaeria exigua) (aka niesslia exigua)
K: culex nigripalpus baculovirus (aka culex nigripalpus nucleopolyhedrovirus)
L: notoligotrichum trichodon (polytrichum trichodon) (aka notoligotrichum trichodon)
M: trichocera trichoptera (aka paracladura trichoptera)
N: atacira chalybsoides
O: baculovirus (aka unidentified baculovirus)
P: cabbage looper (aka trichoplusia ni)
Q: bandavirus (banyangvirus) (aka bandavirus)
R: dyschirius chalceus
S: buchavirus
T: spodoptera exigua (small mottled willow caterpillar) (aka spodoptera exigua)
U: None of the above. | [O; C; T; P] |
<Instruct>: Given the context 'To get insight in the origin of baculovirus CPD photolyase (phr) genes, homologues in the lepidopteran insects Chrysodeixis chalcites, Spodoptera exigua and Trichoplusia ni were identified and characterized.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [baculovirus; chrysodeixis chalcites; spodoptera exigua; trichoplusia ni]
<Options>: A: culex nigripalpus baculovirus (aka culex nigripalpus nucleopolyhedrovirus)
B: toxothrix trichogenes
C: trichocera nordica
D: betabotoulivirus
E: bombus terricola
F: baminivirus
G: scaptomyza exigua (drosophila exigua) (aka scaptomyza exigua)
H: trichoplusia ni (cabbage looper) (aka trichoplusia ni)
I: spodoptera litura
J: calonotos chalcipleura
K: chrysococcyx basalis (chalcites basalis) (aka chrysococcyx basalis)
L: niesslia exigua (eriosphaeria exigua) (aka niesslia exigua)
M: baculovirus sp. (aka unidentified baculovirus)
N: beet armyworm (aka spodoptera exigua)
O: trichocera trichoptera (aka paracladura trichoptera)
P: poecilus chalcites (feronia chalcites) (aka poecilus chalcites)
Q: trichocera
R: chrysodeixis chalcites (phalaena chalcites) (aka chrysodeixis chalcites)
S: euryphura chalcis (harma chalcis) (aka euryphura chalcis)
T: anthoceros exiguus (aka phaeoceros exiguus)
U: None of the above. | [M; R; N; H] |
<Instruct>: Given the context 'To get insight in the origin of baculovirus CPD photolyase (phr) genes, homologues in the lepidopteran insects Chrysodeixis chalcites, Spodoptera exigua and Trichoplusia ni were identified and characterized.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [baculovirus; chrysodeixis chalcites; spodoptera exigua; trichoplusia ni]
<Options>: A: buchavirus
B: eriosphaeria exigua (aka niesslia exigua)
C: meloidogyne exigua
D: beetrevirus
E: spodoptera litura
F: spodoptera exigua (small mottled willow caterpillar) (aka spodoptera exigua)
G: chalcites lucidus (aka chrysococcyx lucidus)
H: trichocera
I: betabotoulivirus
J: unidentified baculovirus (baculovirus sp.) (aka unidentified baculovirus)
K: trichocera trichoptera (aka paracladura trichoptera)
L: notoligotrichum trichodon (polytrichum trichodon) (aka notoligotrichum trichodon)
M: silkworm densovirus (aka bombyx mori densovirus)
N: pamera exigua (aka paromius exiguus)
O: trichoplusia ni (cabbage looper) (aka trichoplusia ni)
P: atacira chalybsoides
Q: harma chalcis (aka euryphura chalcis)
R: calonotos chalcipleura
S: phalaena chalcites (aka chrysodeixis chalcites)
T: trichonectria
U: None of the above. | [J; S; F; O] |
<Instruct>: Given the context 'To get insight in the origin of baculovirus CPD photolyase (phr) genes, homologues in the lepidopteran insects Chrysodeixis chalcites, Spodoptera exigua and Trichoplusia ni were identified and characterized.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [baculovirus; chrysodeixis chalcites; spodoptera exigua; trichoplusia ni]
<Options>: A: chalcites basalis (aka chrysococcyx basalis)
B: buchavirus
C: trichocera
D: trichoplusia ni granulosis virus (aka trichoplusia ni granulovirus)
E: nosema trichoplusiae
F: chrysis dives
G: unidentified baculovirus (baculovirus sp.) (aka unidentified baculovirus)
H: cabbage looper (aka trichoplusia ni)
I: bombyx mori npv (aka bombyx mori nucleopolyhedrovirus)
J: acheta exigua (aka anaxipha exigua)
K: trichocera parva
L: baculovirus penaei
M: striatura exigua
N: orectochilus chalceus
O: spodoptera litura
P: saprinus chalcites
Q: bombus terricola
R: beet armyworm (aka spodoptera exigua)
S: pamera exigua (aka paromius exiguus)
T: chrysodeixis chalcites (phalaena chalcites) (aka chrysodeixis chalcites)
U: None of the above. | [G; T; R; H] |
<Instruct>: Given the context 'Lepidopteran and baculovirus phr genes each form a monophyletic group, and together form a well-supported clade within the insect photolyases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [baculovirus]
<Options>: A: baculovirus sp. (aka unidentified baculovirus)
B: beetrevirus
C: baculovirus penaei
D: bombus velox (agrobombus velox) (aka bombus velox)
E: spodoptera frugiperda granulovirus (spodoptera frugiperda betabaculovirus) (aka spodoptera frugiperda granulovirus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Lepidopteran and baculovirus phr genes each form a monophyletic group, and together form a well-supported clade within the insect photolyases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [baculovirus]
<Options>: A: bombus velox (agrobombus velox) (aka bombus velox)
B: spodoptera frugiperda granulovirus (spodoptera frugiperda betabaculovirus) (aka spodoptera frugiperda granulovirus)
C: baculovirus penaei
D: beetrevirus
E: None of the above. | [E] |
<Instruct>: Given the context 'This suggests that baculoviruses obtained their phr genes from an ancestral lepidopteran insect host.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [baculoviruses]
<Options>: A: bacterial virus (aka tectiviridae)
B: bacterial virus (aka inoviridae)
C: bacterial virus (aka caudoviricetes)
D: baminivirus
E: baculovirus sp. (aka unidentified baculovirus)
F: None of the above. | [E] |
<Instruct>: Given the context 'A likely evolutionary scenario is that a granulovirus, Spodoptera litura GV or a direct ancestor, obtained a phr gene.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [spodoptera litura gv]
<Options>: A: spodoptera litura npv (aka spodoptera litura nucleopolyhedrovirus)
B: spodoptera frugiperda betabaculovirus (aka spodoptera frugiperda granulovirus)
C: spodoptera litura granulovirus
D: spodoptera littoralis granulovirus
E: spodoptera exigua iflavirus
F: None of the above. | [C] |
<Instruct>: Given the context 'The importance of marine vs. human-induced subsidies in the maintenance of an expanding mesocarnivore in the arctic tundra.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: pediculus humanus humanus (aka pediculus humanus corporis)
B: macrobiotus sapiens
C: gymnopleurus humanus
D: homo sapiens (human) (aka homo sapiens)
E: cardium humanum (aka glossus humanus)
F: None of the above. | [D] |
<Instruct>: Given the context 'However, in the case of the northward expansion of the red fox into the arctic tundra, a bottom-up effect of increased resource availability has been proposed, an effect that can counteract prey shortage in the low phase of the multi-annual rodent cycle.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [red fox]
<Options>: A: silver fox (aka vulpes vulpes)
B: gray flying fox (aka pteropus griseus)
C: corsac fox (aka vulpes corsac)
D: swift fox (aka vulpes velox)
E: tibetan sand fox (aka vulpes ferrilata)
F: None of the above. | [A] |
<Instruct>: Given the context 'During different phases of a multi-annual rodent cycle, we investigated the seasonal dynamics and spatial pattern of resource use by red foxes across a coast to inland low arctic tundra gradient, Varanger Peninsula, Norway.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [red foxes]
<Options>: A: arctic fox (aka vulpes lagopus)
B: crab-eating fox (aka cerdocyon thous)
C: silver fox (aka vulpes vulpes)
D: american red fox (aka vulpes vulpes fulvus)
E: little red flying fox (aka pteropus scapulatus)
F: None of the above. | [C] |
<Instruct>: Given the context '3. We found that inland red foxes primarily subsisted on reindeer carrions during the low phase of a small rodent population cycle.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [red foxes; reindeer]
<Options>: A: foxtail (aka alopecurus pratensis)
B: reinmara
C: great egret (aka ardea alba)
D: indian flying fox (aka pteropus medius)
E: reindeer (aka rangifer tarandus)
F: bengal fox (aka vulpes bengalensis)
G: red fox (aka vulpes vulpes)
H: crab-eating fox (aka cerdocyon thous)
I: trogoderma vicinum (aka eurhopalus vicinus)
J: reinia
K: None of the above. | [G; E] |
<Instruct>: Given the context '3. We found that inland red foxes primarily subsisted on reindeer carrions during the low phase of a small rodent population cycle.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [red foxes; reindeer]
<Options>: A: reinhardtius
B: reindeer (aka rangifer tarandus)
C: fennec fox (aka vulpes zerda)
D: reinekea (reinekia) (aka reinekea)
E: sea fox (aka alopias vulpinus)
F: reinia
G: ardea tricolor (aka egretta tricolor)
H: silver fox (aka vulpes vulpes)
I: south american gray fox (aka lycalopex griseus)
J: american red fox (aka vulpes vulpes fulvus)
K: None of the above. | [H; B] |
<Instruct>: Given the context 'Lemmings became the most important food item towards the peak phase of the rodent cycle, despite being less abundant than sympatric voles.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [voles]
<Options>: A: prairie vole (aka microtus ochrogaster)
B: western meadow vole (aka microtus drummondii)
C: gray-tailed vole (aka microtus canicaudus)
D: meadow vole (aka microtus pennsylvanicus)
E: woodland vole (aka microtus pinetorum)
F: None of the above. | [D] |
<Instruct>: Given the context 'Lemmings became the most important food item towards the peak phase of the rodent cycle, despite being less abundant than sympatric voles.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [voles]
<Options>: A: western meadow vole (aka microtus drummondii)
B: prairie vole (aka microtus ochrogaster)
C: gray-tailed vole (aka microtus canicaudus)
D: woodland vole (aka microtus pinetorum)
E: None of the above. | [E] |
<Instruct>: Given the context 'Isotopic signatures of tissue from both predator and prey also revealed that red foxes near the coast used marine-derived subsidies in the winter, but these allochthonous resources did not spillover to adult foxes living beyond 20-25 km from the coast.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [red foxes]
<Options>: A: swift fox (aka vulpes velox)
B: little red flying fox (aka pteropus scapulatus)
C: american red fox (aka vulpes vulpes fulvus)
D: pale fox (aka vulpes pallida)
E: silver fox (aka vulpes vulpes)
F: None of the above. | [E] |
<Instruct>: Given the context 'Although more needs to be learned about the link between increasing primary productivity due to climatic warming and trophic dynamics in tundra ecosystems, we suggest that changes in reindeer management through a bottom-up effect, at least regionally, may have paved the way towards the establishment of a new mesopredator in the tundra biome.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [reindeer]
<Options>: A: domestic horse (aka equus caballus)
B: oreophryne equus
C: reindeer (aka rangifer tarandus)
D: reindeer parapoxvirus
E: toxotinus reinii
F: None of the above. | [C] |
<Instruct>: Given the context 'Galleria mellonella as model host for the trans-kingdom pathogen Fusarium oxysporum.
Fusarium oxysporum, the causal agent of vascular wilt disease, affects a wide range of plant species and can produce disseminated infections in humans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [galleria mellonella; fusarium oxysporum; humans]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: pediculus humanus (human louse) (aka pediculus humanus)
C: galleria mellonella (phalaena mellonella) (aka galleria mellonella)
D: gallinago nigripennis
E: fusarium oxysporum cotton
F: fusarium oryzicola
G: galleria similis
H: lacerta galloti (aka gallotia galloti)
I: gallotia galloti galloti (lacerta galloti galloti) (aka gallotia galloti galloti)
J: fusisporium cerealis (aka fusarium cerealis)
K: fusarium avenaceum (gibberella avenacea r.j. cook, 1967) (aka fusarium avenaceum)
L: cardium humanum (aka glossus humanus)
M: fusarium oxysporum schltdl., 1824 (aka fusarium oxysporum)
N: macrobiotus sapiens
O: gymnopleurus humanus
P: None of the above. | [C; M; A] |
<Instruct>: Given the context 'Galleria mellonella as model host for the trans-kingdom pathogen Fusarium oxysporum.
Fusarium oxysporum, the causal agent of vascular wilt disease, affects a wide range of plant species and can produce disseminated infections in humans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [galleria mellonella; fusarium oxysporum; humans]
<Options>: A: gemmiger gallinarum
B: fusarium oxysporum (fusarium oxysporum schltdl., 1824) (aka fusarium oxysporum)
C: fusisporium solani (aka fusarium solani)
D: homo sapiens (human) (aka homo sapiens)
E: gymnopleurus humanus
F: fusarium rhizicola
G: human louse (aka pediculus humanus)
H: gallinago nigripennis
I: pediculus humanus humanus (aka pediculus humanus corporis)
J: monacrosporium oxysporum (aka orbilia oxyspora)
K: homopus
L: fusarium oxysporum cotton
M: phalaena mellonella (aka galleria mellonella)
N: melogona gallica (chordeuma gallicum) (aka melogona gallica)
O: gallionella
P: None of the above. | [M; B; D] |
<Instruct>: Given the context 'Galleria mellonella as model host for the trans-kingdom pathogen Fusarium oxysporum.
Fusarium oxysporum, the causal agent of vascular wilt disease, affects a wide range of plant species and can produce disseminated infections in humans.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [galleria mellonella; fusarium oxysporum; humans]
<Options>: A: galleria mellonella (phalaena mellonella) (aka galleria mellonella)
B: fusarium heterosporum
C: humans (aka homo)
D: galleria
E: fusarium oxysporum (fusarium oxysporum schltdl., 1824) (aka fusarium oxysporum)
F: hominidae (great apes) (aka hominidae)
G: fusisporium solani (aka fusarium solani)
H: human (aka homo sapiens)
I: gallotia galloti (lacerta galloti) (aka gallotia galloti)
J: homo neanderthalensis (aka homo sapiens neanderthalensis)
K: galleria similis
L: turkey (aka meleagris gallopavo)
M: pediculus humanus (human louse) (aka pediculus humanus)
N: gibberella zeae (aka fusarium graminearum)
O: fusarium oxysporum cotton
P: None of the above. | [A; E; H] |
<Instruct>: Given the context 'F. oxysporum f. sp. lycopersici isolate FGSC 9935 causes disease both on tomato plants and immunodepressed mice, making it an ideal model for the comparative analysis of fungal virulence on plant and animal hosts.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [f. oxysporum f. sp. lycopersici isolate fgsc 9935; tomato plants; mice]
<Options>: A: house mouse (aka mus musculus)
B: mice (aka mus <genus>) (aka mus <genus>)
C: fusarium oxysporum f. sp. loti
D: tomato (aka solanum lycopersicum)
E: solanum latifolium
F: solanum sitiens
G: fusarium oxysporum (fusarium oxysporum schltdl., 1824) (aka fusarium oxysporum)
H: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
I: mus macedonicus (macedonian mouse) (aka mus macedonicus)
J: solanum triflorum
K: fusarium oxysporum f. sp. lycopersici df0-23
L: fusarium oxysporum ii5
M: mus famulus (servant mouse) (aka mus famulus)
N: solanum salicifolium
O: fusarium oxysporum f. sp. lycopersici lsu-3
P: None of the above. | [G; D; A] |
<Instruct>: Given the context 'F. oxysporum f. sp. lycopersici isolate FGSC 9935 causes disease both on tomato plants and immunodepressed mice, making it an ideal model for the comparative analysis of fungal virulence on plant and animal hosts.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [f. oxysporum f. sp. lycopersici isolate fgsc 9935; tomato plants; mice]
<Options>: A: fusarium oxysporum f. sp. lycopersici df0-40
B: tree-tomato (aka solanum betaceum)
C: mus californicus (aka peromyscus californicus)
D: western european house mouse (aka mus musculus domesticus)
E: western wild mouse (aka mus spretus)
F: solanum laxum (solanum jasminoides) (aka solanum laxum)
G: house mouse (aka mus musculus)
H: solanum florulentum
I: fusarium oxysporum f. sp. lycopersici df0-68
J: solanum putii
K: fusarium aff. oxysporum
L: mus terricolor (earth-colored mouse) (aka mus terricolor)
M: fusarium oxysporum schltdl., 1824 (aka fusarium oxysporum)
N: fusarium oxysporum species complex
O: tomato (aka solanum lycopersicum)
P: None of the above. | [M; O; G] |
<Instruct>: Given the context 'F. oxysporum f. sp. lycopersici isolate FGSC 9935 causes disease both on tomato plants and immunodepressed mice, making it an ideal model for the comparative analysis of fungal virulence on plant and animal hosts.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [f. oxysporum f. sp. lycopersici isolate fgsc 9935; tomato plants; mice]
<Options>: A: mus musculus (house mouse) (aka mus musculus)
B: solanum sitiens
C: fusarium oxysporum f. sp. loti
D: solanum canense
E: mus macedonicus (macedonian mouse) (aka mus macedonicus)
F: fusarium oxysporum f. sp. lycopersici df0-68
G: western european house mouse (aka mus musculus domesticus)
H: southeastern asian house mouse (aka mus musculus castaneus)
I: tomato (aka solanum lycopersicum)
J: western wild mouse (aka mus spretus)
K: fusarium oxysporum f. sp. capsici
L: fusarium oxysporum schltdl., 1824 (aka fusarium oxysporum)
M: fusarium aff. oxysporum
N: solanum triflorum
O: solanum corifolium
P: None of the above. | [L; I; A] |
<Instruct>: Given the context 'F. oxysporum f. sp. lycopersici isolate FGSC 9935 causes disease both on tomato plants and immunodepressed mice, making it an ideal model for the comparative analysis of fungal virulence on plant and animal hosts.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [f. oxysporum f. sp. lycopersici isolate fgsc 9935; tomato plants; mice]
<Options>: A: fusarium oxysporum f. sp. loti
B: solanum corifolium
C: fusarium oxysporum f. sp. capsici
D: western wild mouse (aka mus spretus)
E: solanum triflorum
F: southeastern asian house mouse (aka mus musculus castaneus)
G: fusarium oxysporum f. sp. lycopersici df0-68
H: solanum canense
I: mus macedonicus (macedonian mouse) (aka mus macedonicus)
J: fusarium aff. oxysporum
K: western european house mouse (aka mus musculus domesticus)
L: tomato (aka solanum lycopersicum)
M: mus musculus (house mouse) (aka mus musculus)
N: solanum sitiens
O: None of the above. | [O; L; M] |
<Instruct>: Given the context 'Here we tested the ability of FGSC 9935 to cause disease in the greater wax moth Galleria mellonella, an invertebrate model host that is widely used for the study of microbial human pathogens.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fgsc 9935; greater wax moth; galleria mellonella; human]
<Options>: A: neanderthal man (aka homo sapiens neanderthalensis)
B: greater wax moth (aka galleria mellonella)
C: cardium humanum (aka glossus humanus)
D: staphylococcus aureus f59335
E: galleria
F: lacerta galloti galloti (aka gallotia galloti galloti)
G: fueguina
H: staphylococcus aureus ggmc6057
I: pasteurella gallinarum (aka avibacterium gallinarum)
J: staphylococcus aureus f23368
K: pediculus humanus corporis (pediculus humanus humanus) (aka pediculus humanus corporis)
L: lacerta galloti (aka gallotia galloti)
M: human (aka homo sapiens)
N: pediculus humanus (human louse) (aka pediculus humanus)
O: silk moth (aka bombyx mori)
P: large flour beetle (aka tribolium destructor)
Q: greater red dart moth (aka abagrotis alternata)
R: staphylococcus aureus f43199
S: apis campestris (aka bombus campestris)
T: None of the above. | [T; B; B; M] |
<Instruct>: Given the context 'Here we tested the ability of FGSC 9935 to cause disease in the greater wax moth Galleria mellonella, an invertebrate model host that is widely used for the study of microbial human pathogens.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fgsc 9935; greater wax moth; galleria mellonella; human]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: staphylococcus aureus f19955
C: galleria
D: human body louse (aka pediculus humanus corporis)
E: great apes (aka hominidae)
F: melogona gallica (chordeuma gallicum) (aka melogona gallica)
G: human louse (aka pediculus humanus)
H: greater wax moth (aka galleria mellonella)
I: staphylococcus aureus f59335
J: staphylococcus aureus f23368
K: remanella granulosa
L: gallotia galloti galloti (lacerta galloti galloti) (aka gallotia galloti galloti)
M: sphaeria humana (aka sordaria humana)
N: neurospora crassa fgsc 8820
O: gemmiger gallinarum
P: bombella mellum
Q: staphylococcus aureus f74035
R: bombus mexicanus
S: apis campestris (aka bombus campestris)
T: None of the above. | [T; H; H; A] |
<Instruct>: Given the context 'Here we tested the ability of FGSC 9935 to cause disease in the greater wax moth Galleria mellonella, an invertebrate model host that is widely used for the study of microbial human pathogens.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fgsc 9935; greater wax moth; galleria mellonella; human]
<Options>: A: diamondback moth (aka plutella xylostella)
B: hominidae (great apes) (aka hominidae)
C: greater wax moth (aka galleria mellonella)
D: staphylococcus aureus ggmc6053
E: nigella gallica
F: staphylococcus aureus f19955
G: fueguina
H: homo sapiens (human) (aka homo sapiens)
I: fuirena
J: bombus magnus
K: common turkey (aka meleagris gallopavo)
L: bombus maxillosus
M: macrobiotus sapiens
N: galleria similis
O: homo (humans) (aka homo)
P: bombella mellum
Q: lacerta galloti (aka gallotia galloti)
R: neanderthal man (aka homo sapiens neanderthalensis)
S: fibigia
T: None of the above. | [T; C; C; H] |
<Instruct>: Given the context 'Here we tested the ability of FGSC 9935 to cause disease in the greater wax moth Galleria mellonella, an invertebrate model host that is widely used for the study of microbial human pathogens.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fgsc 9935; greater wax moth; galleria mellonella; human]
<Options>: A: staphylococcus aureus f23368
B: staphylococcus aureus f59335
C: staphylococcus aureus f19955
D: silk moth (aka bombyx mori)
E: graeffea
F: macrobiotus sapiens
G: staphylococcus aureus f43199
H: gallionella
I: galleria
J: glossus humanus (cardium humanum) (aka glossus humanus)
K: carcharhinus humani
L: fall armyworm (aka spodoptera frugiperda)
M: melogona gallica (chordeuma gallicum) (aka melogona gallica)
N: bombus magnus
O: common honeybee (aka apis mellifera ligustica)
P: human (aka homo sapiens)
Q: greater wax moth (aka galleria mellonella)
R: gemmiger gallinarum
S: human louse (aka pediculus humanus)
T: None of the above. | [T; Q; Q; P] |
<Instruct>: Given the context 'Injection of living but not of heat-killed microconidia into the hemocoel of G. mellonella larvae resulted in dose-dependent killing both at 30^0C and at 37^0C. Fluorescence microscopy of larvae inoculated with a F. oxysporum transformant expressing GFP revealed hyphal proliferation within the hemocoel, interaction with G. mellonella hemocytes, and colonization of the killed insects by the fungus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [g. mellonella; f. oxysporum transformant]
<Options>: A: peronospora trifoliorum
B: ansanella granifera
C: phalaena mellonella (aka galleria mellonella)
D: gallionella
E: fusarium graminearum (gibberella zeae (schwein.) petch, 1936) (aka fusarium graminearum)
F: fusarium oxysporum schltdl., 1824 (aka fusarium oxysporum)
G: sclerotinia trifoliorum
H: fusarium thapsinum (gibberella thapsina) (aka fusarium thapsinum)
I: meloidogyne graminicola
J: gemmiger gallinarum
K: None of the above. | [C; F] |
<Instruct>: Given the context 'Injection of living but not of heat-killed microconidia into the hemocoel of G. mellonella larvae resulted in dose-dependent killing both at 30^0C and at 37^0C. Fluorescence microscopy of larvae inoculated with a F. oxysporum transformant expressing GFP revealed hyphal proliferation within the hemocoel, interaction with G. mellonella hemocytes, and colonization of the killed insects by the fungus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [g. mellonella; f. oxysporum transformant]
<Options>: A: fusarium oxysporum f. tuberosi (aka fusarium oxysporum f. sp. tuberosi)
B: fusarium gossypinum
C: fusarium secorum
D: gallionella
E: cotton bollworm (aka helicoverpa armigera)
F: galleria mellonella (phalaena mellonella) (aka galleria mellonella)
G: glossiphonia elegans
H: fusarium oxysporum schltdl., 1824 (aka fusarium oxysporum)
I: septogloeum oxysporum
J: ansanella granifera
K: None of the above. | [F; H] |
<Instruct>: Given the context 'Injection of living but not of heat-killed microconidia into the hemocoel of G. mellonella larvae resulted in dose-dependent killing both at 30^0C and at 37^0C. Fluorescence microscopy of larvae inoculated with a F. oxysporum transformant expressing GFP revealed hyphal proliferation within the hemocoel, interaction with G. mellonella hemocytes, and colonization of the killed insects by the fungus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [g. mellonella; f. oxysporum transformant]
<Options>: A: cotton bollworm (aka helicoverpa armigera)
B: glossiphonia elegans
C: galleria mellonella (phalaena mellonella) (aka galleria mellonella)
D: ansanella granifera
E: septogloeum oxysporum
F: fusarium secorum
G: fusarium oxysporum f. tuberosi (aka fusarium oxysporum f. sp. tuberosi)
H: gallionella
I: fusarium gossypinum
J: None of the above. | [C; J] |
<Instruct>: Given the context 'Fungal gene knockout mutants previously tested in the tomato and immunodepressed mouse systems displayed a good correlation in virulence between the Galleria and the mouse model.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tomato; mouse]
<Options>: A: mus famulus (servant mouse) (aka mus famulus)
B: lycopersicon chilense (aka solanum chilense)
C: solanum cornifolium
D: mus macedonicus (macedonian mouse) (aka mus macedonicus)
E: mus musculus (house mouse) (aka mus musculus)
F: tomato (aka solanum lycopersicum)
G: solanum florulentum
H: solanum latifolium
I: mus terricolor (earth-colored mouse) (aka mus terricolor)
J: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
K: None of the above. | [F; E] |
<Instruct>: Given the context 'Fungal gene knockout mutants previously tested in the tomato and immunodepressed mouse systems displayed a good correlation in virulence between the Galleria and the mouse model.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tomato; mouse]
<Options>: A: solanum hirtum
B: western wild mouse (aka mus spretus)
C: mice (aka mus <genus>) (aka mus <genus>)
D: tomato (aka solanum lycopersicum)
E: mus terricolor (earth-colored mouse) (aka mus terricolor)
F: solanum trifidum
G: solanum pyrifolium
H: mus macedonicus (macedonian mouse) (aka mus macedonicus)
I: solanum trifolium
J: mus musculus (house mouse) (aka mus musculus)
K: None of the above. | [D; J] |
<Instruct>: Given the context 'Thus, Galleria represents a useful non-vertebrate infection model for studying virulence mechanisms of F. oxysporum on animal hosts.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [f. oxysporum]
<Options>: A: fusarium oryzicola
B: fusarium oxysporum schltdl., 1824 (aka fusarium oxysporum)
C: fusarium graminearum (gibberella zeae (schwein.) petch, 1936) (aka fusarium graminearum)
D: fusarium secorum
E: monacrosporium oxysporum (aka orbilia oxyspora)
F: None of the above. | [B] |
<Instruct>: Given the context 'DNA modifications and genome rearrangements during the development and sex differentiation of the bumble bee Bombus terrestris.
Bombus terrestris is a bumble bee that, like most hymenopteran species, exhibits ploidy-specific sex determination controlled by a single sex gene.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bombus terrestris]
<Options>: A: bombus jacobsoni (aka bombus lucorum)
B: bombus magnus
C: bombus terricola
D: bombus terrestris (large earth bumblebee) (aka bombus terrestris)
E: bombus terrestris terrestris (apis terrestris terrestris) (aka bombus terrestris terrestris)
F: None of the above. | [D] |
<Instruct>: Given the context 'In the second kind, DNA losses also occur, at least involving the mosaic transposable element B. terrestris mosaic repeat 1 (BTMR1).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. terrestris]
<Options>: A: bombus terrestris calabricus
B: haemopis terrestris
C: bombus terrestris (large earth bumblebee) (aka bombus terrestris)
D: brodiaea terrestris
E: blastobotrys terrestris (trichosporon terrestre) (aka blastobotrys terrestris)
F: None of the above. | [C] |
<Instruct>: Given the context 'Evaluation of an immunoglobulin M-specific capture enzyme-linked immunosorbent assay for rapid diagnosis of dengue infection.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue]
<Options>: A: dengue 3 virus (aka dengue virus type 3)
B: yellow fever mosquito (aka aedes aegypti)
C: dengue type 1 d1 virus (aka dengue virus type 1)
D: dengue virus
E: dengue virus 4 (aka dengue virus type 4)
F: None of the above. | [D] |
<Instruct>: Given the context 'Various assays have been developed to diagnose dengue virus infection, relying on techniques from the fields of serology and molecular biology.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue virus]
<Options>: A: dengue virus
B: denalis virus
C: dengue virus 2 (aka dengue virus type 2)
D: dengue virus 4 (aka dengue virus type 4)
E: type 1 dengue virus den-1 (aka dengue virus type 1)
F: None of the above. | [A] |
<Instruct>: Given the context 'Many of these assays have been successful, but there is still an urgent need for accurate, simple and rapid diagnostic assays to diagnose dengue virus infection and to assist in patient management.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue virus]
<Options>: A: denwin virus
B: type 1 dengue virus den-1 (aka dengue virus type 1)
C: dengue virus 3 (aka dengue virus type 3)
D: dengue virus
E: dengue viruses (aka dengue virus group)
F: None of the above. | [D] |
<Instruct>: Given the context 'Many of these assays have been successful, but there is still an urgent need for accurate, simple and rapid diagnostic assays to diagnose dengue virus infection and to assist in patient management.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue virus]
<Options>: A: denwin virus
B: dengue virus 3 (aka dengue virus type 3)
C: type 1 dengue virus den-1 (aka dengue virus type 1)
D: dengue viruses (aka dengue virus group)
E: None of the above. | [E] |
<Instruct>: Given the context 'Using a panel of well-characterized sera and a collection of retrospective samples obtained during the dengue epidemics that occurred in Belem, Brazil, between 2002 and 2009, a modified immunoglobulin M-specific capture enzyme-linked immunosorbent assay (Rapid-MAC-ELISA) was evaluated and compared with the "gold standard" MAC-ELISA, in order to assess the specificity, sensitivity, stability, reproducibility and cost-effectiveness of this new assay.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue]
<Options>: A: dengue virus type 4 (dengue type 4 virus den4) (aka dengue virus type 4)
B: dengue virus
C: dengue virus 3 (aka dengue virus type 3)
D: yellow fever mosquito (aka aedes aegypti)
E: dengue type 1 d1 virus (aka dengue virus type 1)
F: None of the above. | [B] |
<Instruct>: Given the context 'Furthermore, the Rapid-MAC-ELISA can be used for the diagnosis of dengue virus infections in resource-limited areas where dengue is endemic.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue virus; dengue]
<Options>: A: type 1 dengue virus den-1 (aka dengue virus type 1)
B: dengue virus type 2 (dengue virus serotype 2) (aka dengue virus type 2)
C: dengue virus serotype 3 (aka dengue virus type 3)
D: dengue-2 virus (aka dengue virus type 2)
E: dengue virus
F: dengue viruses (aka dengue virus group)
G: dengue virus type 4 (dengue type 4 virus den4) (aka dengue virus type 4)
H: dengue virus 4 (aka dengue virus type 4)
I: drosophila a virus
J: None of the above. | [E; E] |
<Instruct>: Given the context 'Furthermore, the Rapid-MAC-ELISA can be used for the diagnosis of dengue virus infections in resource-limited areas where dengue is endemic.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [dengue virus; dengue]
<Options>: A: dengue virus serotype 2 (aka dengue virus type 2)
B: dengue virus
C: dengue virus 4 (aka dengue virus type 4)
D: drosophila a virus
E: denwin virus
F: dengue viruses (aka dengue virus group)
G: denalis virus
H: dengue virus 1 (aka dengue virus type 1)
I: None of the above. | [B; B] |
<Instruct>: Given the context 'Identification of an extracellular polysaccharide network essential for cytochrome anchoring and biofilm formation in Geobacter sulfurreducens.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [geobacter sulfurreducens]
<Options>: A: geobacter grbiciae
B: geobacter benzoatilyticus
C: geobacter metallireducens
D: geobacter sulfurreducens
E: geobacter humireducens ('geobacter humireducens') (aka geobacter humireducens)
F: None of the above. | [D] |
<Instruct>: Given the context 'Transposon insertions in Geobacter sulfurreducens GSU1501, part of an ATP-dependent exporter within an operon of polysaccharide biosynthesis genes, were previously shown to eliminate insoluble Fe(III) reduction and use of an electrode as an electron acceptor.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [geobacter sulfurreducens]
<Options>: A: sulfitobacter geojensis
B: geosporobacter ferrireducens
C: geobacter sulfurreducens
D: geobacter sulfurreducens subsp. ethanolicus
E: geobacter metallireducens
F: None of the above. | [C] |
<Instruct>: Given the context 'Scanning electron microscopy revealed fibrils surrounding wild-type G. sulfurreducens which were absent from the Delta1501 mutant.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [g. sulfurreducens]
<Options>: A: geobacillus zalihae
B: gluconobacter vitians
C: geobacter sulfurreducens
D: bacterium gts
E: granulimonas faecalis
F: None of the above. | [C] |
<Instruct>: Given the context 'In the present study we explore the diversity of dinoflagellates in Lake Baikal by identifying and analyzing dinoflagellate sequences for 18S rDNA and ITS-2 from total DNA extracted from three species of endemic Baikalian sponges (Baikalospongia intermedia, Baikalospongia recta and Lubomirskia incrustans).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [baikalospongia intermedia; baikalospongia recta; lubomirskia incrustans]
<Options>: A: trochilioides recta
B: swainsona recta
C: steccherinum incrustans
D: stanhopea intermedia
E: barbarea intermedia
F: lelapiella incrustans
G: sphaerotheca intermedia (aka podosphaera intermedia)
H: goniastrea incrustans (aka coelastrea incrustans)
I: protosuberites incrustans (suberites incrustans) (aka protosuberites incrustans)
J: baikalospongia intermedia
K: lubomirskia incrustans
L: iscadia rectilinea (pucialia rectilinea) (aka iscadia rectilinea)
M: baikalospongia recta
N: baltimora recta
O: baikalospongia intermedia intermedia
P: None of the above. | [J; M; K] |
<Instruct>: Given the context 'In the present study we explore the diversity of dinoflagellates in Lake Baikal by identifying and analyzing dinoflagellate sequences for 18S rDNA and ITS-2 from total DNA extracted from three species of endemic Baikalian sponges (Baikalospongia intermedia, Baikalospongia recta and Lubomirskia incrustans).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [baikalospongia intermedia; baikalospongia recta; lubomirskia incrustans]
<Options>: A: protoblastenia incrustans (patellaria incrustans) (aka protoblastenia incrustans)
B: potentilla recta
C: baikalospongia intermedia profundalis
D: sinobambusa intermedia
E: iscadia rectilinea (pucialia rectilinea) (aka iscadia rectilinea)
F: kronides incumbens
G: baikalospongia recta
H: galzinia incrustans (aka mycobernardia incrustans)
I: baikalospongia intermedia intermedia
J: steccherinum incrustans
K: swainsona recta
L: blastodendrion intermedium cif. & ashford, 1929 (aka sungouiella intermedia)
M: baikalospongia intermedia
N: lubomirskia incrustans
O: prionocera recta
P: None of the above. | [M; G; N] |
<Instruct>: Given the context 'In the present study we explore the diversity of dinoflagellates in Lake Baikal by identifying and analyzing dinoflagellate sequences for 18S rDNA and ITS-2 from total DNA extracted from three species of endemic Baikalian sponges (Baikalospongia intermedia, Baikalospongia recta and Lubomirskia incrustans).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [baikalospongia intermedia; baikalospongia recta; lubomirskia incrustans]
<Options>: A: sphaerotheca intermedia (aka podosphaera intermedia)
B: cylloseris incrustans (aka leptoseris incrustans)
C: austrotinodes recta
D: lubomirskia incrustans
E: placospongia intermedia
F: baikalospongia recta
G: vetulina incrustans
H: sinobambusa intermedia
I: protosuberites incrustans (suberites incrustans) (aka protosuberites incrustans)
J: sisyrinchium rectilineum
K: prionocera recta
L: holospora recta
M: baikalospongia intermedia
N: chamaesiphon incrustans
O: systellaspis intermedia
P: None of the above. | [M; F; D] |
<Instruct>: Given the context 'In addition,Gyrodinium helveticum, representatives from the genus Gymnodinium, dinoflagellates close to the family Pfiesteriaceae, and a few dinoflagellates without definite affiliation were detected.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [gyrodinium helveticum]
<Options>: A: chalazion helveticum
B: gyrodinium dorsum
C: glomeris helvetica
D: stigeoclonium helveticum
E: gymnodinium helveticum (aka gyrodinium helveticum)
F: None of the above. | [E] |
<Instruct>: Given the context 'A recombinant measles virus unable to antagonize STAT1 function cannot control inflammation and is attenuated in rhesus monkeys.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [measles virus; rhesus monkeys]
<Options>: A: macaca cynomolgus (aka macaca fascicularis)
B: meram virus
C: red-tailed monkey (aka cercopithecus ascanius)
D: moyer virus
E: mawson virus
F: cercopithecus mulatta (aka macaca mulatta)
G: marr virus
H: monkey (aka platyrrhini)
I: macaca (macaques) (aka macaca)
J: measles virus (aka measles morbillivirus)
K: None of the above. | [J; F] |
<Instruct>: Given the context 'A recombinant measles virus unable to antagonize STAT1 function cannot control inflammation and is attenuated in rhesus monkeys.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [measles virus; rhesus monkeys]
<Options>: A: macaca (macaques) (aka macaca)
B: moyer virus
C: macaca cynomolgus (aka macaca fascicularis)
D: meram virus
E: mawson virus
F: marr virus
G: measles virus (aka measles morbillivirus)
H: monkey (aka platyrrhini)
I: red-tailed monkey (aka cercopithecus ascanius)
J: None of the above. | [G; J] |
<Instruct>: Given the context 'A recombinant measles virus unable to antagonize STAT1 function cannot control inflammation and is attenuated in rhesus monkeys.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [measles virus; rhesus monkeys]
<Options>: A: capuchin monkeys (aka cebus)
B: monkey (aka cercopithecidae)
C: mawson virus
D: marr virus
E: rhesus monkey (aka macaca mulatta)
F: measles virus mv (aka measles morbillivirus)
G: macaque (aka macaca)
H: monkey (aka platyrrhini)
I: morbilliviruses (aka morbillivirus)
J: measles virus (strain halle) (aka measles virus strain halle)
K: None of the above. | [F; E] |
<Instruct>: Given the context 'The measles virus (MV) P gene encodes three proteins (P, V, and C) that interfere with innate immunity, controlling STAT1, STAT2, mda5, and perhaps other key regulators of immune function.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [measles virus; mv]
<Options>: A: moyer virus
B: macmv (aka maclura mosaic virus)
C: marr virus
D: morbillivirus (morbilliviruses) (aka morbillivirus)
E: rubella virus
F: murine minute virus (strain mvmi)
G: murine minute virus (aka minute virus of mice)
H: measles morbillivirus (cell-associated subacute sclerosing panencephalitis) (aka measles morbillivirus)
I: myeloblastosis-associated virus (aka avian myeloblastosis-associated virus)
J: None of the above. | [H; H] |
<Instruct>: Given the context 'The measles virus (MV) P gene encodes three proteins (P, V, and C) that interfere with innate immunity, controlling STAT1, STAT2, mda5, and perhaps other key regulators of immune function.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [measles virus; mv]
<Options>: A: marr virus
B: measles morbillivirus (cell-associated subacute sclerosing panencephalitis) (aka measles morbillivirus)
C: menangle virus
D: meram virus
E: mirabilis mosaic virus
F: myeloblastosis-associated virus (aka avian myeloblastosis-associated virus)
G: veltheimia mosaic virus
H: morbillivirus (morbilliviruses) (aka morbillivirus)
I: mev (aka mink enteritis virus) (aka mink enteritis virus)
J: None of the above. | [B; B] |
<Instruct>: Given the context 'This information was used to generate a recombinant measles virus unable to antagonize STAT1 function (STAT1-blind MV) differing only in these three residues from a wild-type strain of well-defined virulence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [measles virus; mv]
<Options>: A: measles virus (aka measles morbillivirus)
B: murine minute virus (strain mvmi)
C: morbillivirus (morbilliviruses) (aka morbillivirus)
D: moyer virus
E: meram virus
F: macmv (aka maclura mosaic virus)
G: veltheimia mosaic virus
H: morreton virus (aka vesiculovirus morreton)
I: marek disease virus (aka gallid alphaherpesvirus 2)
J: None of the above. | [A; A] |
<Instruct>: Given the context 'This information was used to generate a recombinant measles virus unable to antagonize STAT1 function (STAT1-blind MV) differing only in these three residues from a wild-type strain of well-defined virulence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [measles virus; mv]
<Options>: A: veltheimia mosaic virus
B: meram virus
C: rubella virus
D: menangle virus
E: marr virus
F: mirabilis mosaic virus
G: vanmv (aka vanilla mosaic virus)
H: marek disease virus (aka gallid alphaherpesvirus 2)
I: measles virus (aka measles morbillivirus)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'This information was used to generate a recombinant measles virus unable to antagonize STAT1 function (STAT1-blind MV) differing only in these three residues from a wild-type strain of well-defined virulence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [measles virus; mv]
<Options>: A: veltheimia mosaic virus
B: mirabilis mosaic virus
C: marek disease virus (aka gallid alphaherpesvirus 2)
D: meram virus
E: vanmv (aka vanilla mosaic virus)
F: marr virus
G: menangle virus
H: rubella virus
I: None of the above. | [I; I] |
<Instruct>: Given the context 'When a group of six rhesus monkeys (Macaca mulatta) was inoculated intranasally with STAT1-blind MV, viremia was short-lived, and the skin rash and other clinical signs observed with wild-type MV were absent.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhesus monkeys; macaca mulatta; mv]
<Options>: A: cynomolgus macaque (aka macaca fascicularis)
B: red-tailed monkey (aka cercopithecus ascanius)
C: murine minute virus (strain mvmi)
D: morreton virus (aka vesiculovirus morreton)
E: monkey (aka cercopithecidae)
F: macaca maurus (aka macaca maura)
G: macaques (aka macaca)
H: macaca mulatta lasiota (aka macaca mulatta lasiotus)
I: monkeys (aka platyrrhini)
J: macaca irus (aka macaca fascicularis)
K: rhesus macaque (aka macaca mulatta)
L: menangle virus
M: rubeola virus (aka measles morbillivirus)
N: mev (aka mink enteritis virus) (aka mink enteritis virus)
O: None of the above. | [K; K; M] |
<Instruct>: Given the context 'When a group of six rhesus monkeys (Macaca mulatta) was inoculated intranasally with STAT1-blind MV, viremia was short-lived, and the skin rash and other clinical signs observed with wild-type MV were absent.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhesus monkeys; macaca mulatta; mv]
<Options>: A: red-tailed monkey (aka cercopithecus ascanius)
B: macaca mulatta lasiota (aka macaca mulatta lasiotus)
C: myeloblastosis-associated virus (aka avian myeloblastosis-associated virus)
D: monkeys (aka platyrrhini)
E: macaca cynomolgus (aka macaca fascicularis)
F: macaca sylvanus (barbary macaque) (aka macaca sylvanus)
G: rhesus macaque (aka macaca mulatta)
H: mirabilis mosaic virus
I: morreton virus (aka vesiculovirus morreton)
J: measles virus (aka measles morbillivirus)
K: macaque (aka macaca)
L: macaca leonina (northern pig-tailed macaque) (aka macaca leonina)
M: murine parvovirus (aka minute virus of mice)
N: None of the above. | [G; G; J] |
<Instruct>: Given the context 'When a group of six rhesus monkeys (Macaca mulatta) was inoculated intranasally with STAT1-blind MV, viremia was short-lived, and the skin rash and other clinical signs observed with wild-type MV were absent.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhesus monkeys; macaca mulatta; mv]
<Options>: A: monkeys (aka cercopithecidae)
B: red-tailed monkey (aka cercopithecus ascanius)
C: macmv (aka maclura mosaic virus)
D: macaca leonina (northern pig-tailed macaque) (aka macaca leonina)
E: mirabilis mosaic virus
F: macaca (macaques) (aka macaca)
G: measles virus mv (aka measles morbillivirus)
H: macaca maurus (aka macaca maura)
I: rhesus macaque (aka macaca mulatta)
J: menangle virus
K: macaca sylvanus (barbary macaque) (aka macaca sylvanus)
L: macaca irus (aka macaca fascicularis)
M: cynomolgus monkeys (aka macaca fascicularis)
N: murine minute virus (strain mvmi)
O: None of the above. | [I; I; G] |
<Instruct>: Given the context 'Importantly, neutralizing antibody titers and MV-specific T-cell responses were equivalent in hosts infected with either virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mv]
<Options>: A: mirabilis mosaic virus
B: mvule (aka milicia excelsa)
C: vanmv (aka vanilla mosaic virus)
D: measles virus mv (aka measles morbillivirus)
E: veltheimia mosaic virus
F: None of the above. | [D] |
<Instruct>: Given the context 'Importantly, neutralizing antibody titers and MV-specific T-cell responses were equivalent in hosts infected with either virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mv]
<Options>: A: veltheimia mosaic virus
B: vanmv (aka vanilla mosaic virus)
C: mvule (aka milicia excelsa)
D: mirabilis mosaic virus
E: None of the above. | [E] |
<Instruct>: Given the context 'These findings indicate that efficient MV interactions with STAT1 are required to sustain virulence in a natural host by controlling the inflammatory response against the virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mv]
<Options>: A: meno virus
B: murine minute virus (strain mvmi)
C: rubeola virus (aka measles morbillivirus)
D: mirabilis mosaic virus
E: morreton virus (aka vesiculovirus morreton)
F: None of the above. | [C] |
<Instruct>: Given the context 'They also suggest that selectively STAT1-blind MV may have utility as vectors for targeted oncolysis and vaccination.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mv]
<Options>: A: mouse minute virus (aka minute virus of mice)
B: measles virus (aka measles morbillivirus)
C: mirabilis mosaic virus
D: myeloblastosis-associated virus (aka avian myeloblastosis-associated virus)
E: mvule (aka milicia excelsa)
F: None of the above. | [B] |
<Instruct>: Given the context 'Genome-wide inventory of metal homeostasis-related gene products including a functional phytochelatin synthase in the hypogeous mycorrhizal fungus Tuber melanosporum.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tuber melanosporum]
<Options>: A: triepeolus melanarius
B: tuber calosporum
C: monotagma tuberosum
D: tuber melanoexcavatum
E: black truffle (aka tuber melanosporum)
F: None of the above. | [E] |
<Instruct>: Given the context 'Building upon the genome sequence of Tuber melanosporum and on transcriptome analyses, we set out to systematically identify metal homeostasis-related genes in this plant-symbiotic ascomycete.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tuber melanosporum]
<Options>: A: tuber calosporum
B: perigord truffle (aka tuber melanosporum)
C: monotagma tuberosum
D: tuber macrosporum
E: tuber sphaerosporum
F: None of the above. | [B] |
<Instruct>: Given the context 'The latter class includes a small-size metallothionein (TmelMT) that was functionally validated in yeast, and phytochelatin synthase (TmelPCS), the first enzyme of this kind to be described in filamentous ascomycetes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: mycoderma cerevisiae (aka saccharomyces cerevisiae)
B: saccharomyces rouxii (aka zygosaccharomyces rouxii)
C: torulaspora hansenii (aka debaryomyces hansenii)
D: saccharomyces fermentati (aka torulaspora delbrueckii)
E: saccharomyces marxianus (aka kluyveromyces marxianus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Recombinant TmelPCS was shown to support GSH-dependent, metal-activated phytochelatin synthesis in vitro and to afford increased Cd/Cu tolerance to metal hypersensitive yeast strains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast]
<Options>: A: torulaspora hansenii (aka debaryomyces hansenii)
B: saccharomyces oviformis (aka saccharomyces cerevisiae)
C: saccharomyces fermentati (aka torulaspora delbrueckii)
D: saccharomyces ovalis (aka malassezia furfur)
E: saccharomyces globosus (aka saccharomyces uvarum)
F: None of the above. | [B] |
<Instruct>: Given the context 'The human adenovirus E4orf4 protein is toxic in both human tumor cells and Saccharomyces cerevisiae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; saccharomyces cerevisiae]
<Options>: A: carcharhinus humani
B: saccharomyces pasteurianus (aka saccharomyces pastorianus)
C: gymnopleurus humanus
D: megasphaera cerevisiae
E: pediculus humanus humanus (aka pediculus humanus corporis)
F: saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (aka saccharomyces cerevisiae)
G: saccharomyces drosophilarum (aka kluyveromyces lactis)
H: neanderthal man (aka homo sapiens neanderthalensis)
I: saccharomyces hansenii (aka debaryomyces hansenii)
J: homo sapiens (human) (aka homo sapiens)
K: None of the above. | [J; F] |
<Instruct>: Given the context 'The human adenovirus E4orf4 protein is toxic in both human tumor cells and Saccharomyces cerevisiae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; saccharomyces cerevisiae]
<Options>: A: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
B: macrobiotus sapiens
C: saccharomyces ovalis (aka malassezia furfur)
D: saccharomyces marxianus (aka kluyveromyces marxianus)
E: humans (aka homo)
F: saccharomyces globosus (aka saccharomyces uvarum)
G: sphaeria humana (aka sordaria humana)
H: megasphaera cerevisiae
I: cardium humanum (aka glossus humanus)
J: human (aka homo sapiens)
K: None of the above. | [J; A] |
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