instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
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<Instruct>: Given the context 'The expanding cassava brown streak disease (CBSD) epidemic in East Africa is caused by two ipomoviruses (genus Ipomovirus; Potyviridae), namely, Cassava brown streak virus (CBSV), and Ugandan cassava brown streak virus (UCBSV) that was described recently.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ucbsv]
<Options>: A: sopaboc virus
B: bearcv (aka circovirus bear)
C: umbre virus (umbre orthobunyavirus) (aka umbre virus)
D: ucbsv (aka ugandan cassava brown streak virus)
E: cbastvirus
F: None of the above. | [D] |
<Instruct>: Given the context 'The expanding cassava brown streak disease (CBSD) epidemic in East Africa is caused by two ipomoviruses (genus Ipomovirus; Potyviridae), namely, Cassava brown streak virus (CBSV), and Ugandan cassava brown streak virus (UCBSV) that was described recently.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ucbsv]
<Options>: A: sopaboc virus
B: bearcv (aka circovirus bear)
C: cbastvirus
D: umbre virus (umbre orthobunyavirus) (aka umbre virus)
E: None of the above. | [E] |
<Instruct>: Given the context 'Results showed that CBSV and UCBSV are distributed widely in the highlands (> 1000 m above the sea level) of the Lake Victoria zone in Uganda and Tanzania and also in the Indian Ocean costal lowlands of Tanzania.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cbsv; ucbsv]
<Options>: A: beet severe curly top virus
B: bearcv (aka circovirus bear)
C: cbastvirus
D: cscsv (aka cassava colombian symptomless virus)
E: ucbsv (aka ugandan cassava brown streak virus)
F: bovine serum-associated circular virus
G: simian bocavirus
H: becv (aka bovine coronavirus) (aka bovine coronavirus)
I: beet black scorch virus
J: chrococunb virus
K: None of the above. | [K; E] |
<Instruct>: Given the context 'Results showed that CBSV and UCBSV are distributed widely in the highlands (> 1000 m above the sea level) of the Lake Victoria zone in Uganda and Tanzania and also in the Indian Ocean costal lowlands of Tanzania.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cbsv; ucbsv]
<Options>: A: bovine serum-associated circular virus
B: ucbsv (aka ugandan cassava brown streak virus)
C: csv (aka cocksfoot streak virus) (aka cocksfoot streak virus)
D: umbre virus (umbre orthobunyavirus) (aka umbre virus)
E: colombian potato soil-borne virus (cpsbv) (aka colombian potato soil-borne virus)
F: cloning vector plx-ucbsv
G: chrococunb virus
H: sgcsv (aka sorghum chlorotic spot virus)
I: sicyonia brevirostris associated circular virus
J: bsbv (aka beet soil-borne virus) (aka beet soil-borne virus)
K: None of the above. | [K; B] |
<Instruct>: Given the context 'Isolates of UCBSV from the Lake Victoria zone were placed to two phylogenetic clusters in accordance with their origin in Uganda or Tanzania, respectively.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ucbsv]
<Options>: A: chrococunb virus
B: bearcv (aka circovirus bear)
C: ucbsv (aka ugandan cassava brown streak virus)
D: chrocarunb virus
E: bovine serum-associated circular virus
F: None of the above. | [C] |
<Instruct>: Given the context 'Mixed infections with CBSV and UCBSV were detected in many cassava plants in the areas surveyed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cbsv; ucbsv; cassava]
<Options>: A: bsbv (aka beet soil-borne virus) (aka beet soil-borne virus)
B: cassava (aka manihot esculenta)
C: chrococunb virus
D: umbre virus (umbre orthobunyavirus) (aka umbre virus)
E: cassinia
F: cpsbv (aka colombian potato soil-borne virus)
G: ucbsv (aka ugandan cassava brown streak virus)
H: cbastvirus
I: syrbvirus
J: cassia aphylla (aka senna aphylla)
K: sicyonia brevirostris associated circular virus
L: cassena indica
M: bovine serum-associated circular virus
N: purging cassia (aka cassia fistula)
O: None of the above. | [O; G; B] |
<Instruct>: Given the context 'Mixed infections with CBSV and UCBSV were detected in many cassava plants in the areas surveyed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cbsv; ucbsv; cassava]
<Options>: A: cassia tropica (aka senna tropica)
B: chrocarunb virus
C: sorghum chlorotic spot virus (sgcsv) (aka sorghum chlorotic spot virus)
D: simian bocavirus
E: beet chlorosis virus
F: cassia
G: cassia charlesiana (aka senna charlesiana)
H: csv (aka cocksfoot streak virus) (aka cocksfoot streak virus)
I: umbre virus (umbre orthobunyavirus) (aka umbre virus)
J: ucbsv (aka ugandan cassava brown streak virus)
K: bearcv (aka circovirus bear)
L: becv (aka bovine coronavirus) (aka bovine coronavirus)
M: cassava (aka manihot esculenta)
N: cassis cornuta (cassis cornuta (linnaeus, 1758)) (aka cassis cornuta)
O: None of the above. | [O; J; M] |
<Instruct>: Given the context 'Mixed infections with CBSV and UCBSV were detected in many cassava plants in the areas surveyed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cbsv; ucbsv; cassava]
<Options>: A: casse (aka senna alexandrina)
B: cassia sophera (aka senna sophera)
C: cscsv (aka cassava colombian symptomless virus)
D: beet black scorch virus
E: cassia tora (aka senna tora)
F: cassava (aka manihot esculenta)
G: syrbvirus
H: colombian potato soil-borne virus (cpsbv) (aka colombian potato soil-borne virus)
I: bctv (aka beet curly top virus) (aka beet curly top virus)
J: bovine serum-associated circular virus
K: ucbsv (aka ugandan cassava brown streak virus)
L: acmaea cassis (aka lottia cassis)
M: chrocurosk virus
N: bearcv (aka circovirus bear)
O: None of the above. | [O; K; F] |
<Instruct>: Given the context 'CBSV was also detected in the perennial species Manihot glaziovii (DNA-barcoded in this study) in Tanzania, which revealed the first virus reservoir other than cassava.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cbsv; manihot glaziovii; cassava]
<Options>: A: vicia cassia
B: apodanthera glaziovii
C: cassena indica
D: cassia pilifera (aka senna pilifera)
E: cassava (aka manihot esculenta)
F: beet severe curly top virus
G: manihot glaziovii
H: becv (aka bovine coronavirus) (aka bovine coronavirus)
I: cassia sophera (aka senna sophera)
J: mitostemma glaziovii
K: trattinnickia glaziovii
L: bctv (aka beet curly top virus) (aka beet curly top virus)
M: beet chlorosis virus
N: baccharis glaziovii
O: sgcsv (aka sorghum chlorotic spot virus)
P: None of the above. | [P; G; E] |
<Instruct>: Given the context 'CBSV was also detected in the perennial species Manihot glaziovii (DNA-barcoded in this study) in Tanzania, which revealed the first virus reservoir other than cassava.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cbsv; manihot glaziovii; cassava]
<Options>: A: sicyonia brevirostris associated circular virus
B: acmaea cassis (aka lottia cassis)
C: apodanthera glaziovii
D: schizachyrium glaziovii
E: quiina glaziovii
F: cassia aphylla (aka senna aphylla)
G: bsbv (aka beet soil-borne virus) (aka beet soil-borne virus)
H: ucbsv (aka ugandan cassava brown streak virus)
I: cassia arida (aka senna arida)
J: marlierea glazioviana
K: cassava (aka manihot esculenta)
L: csv (aka cocksfoot streak virus) (aka cocksfoot streak virus)
M: manihot glaziovii
N: cassis cornuta (linnaeus, 1758) (aka cassis cornuta)
O: beet chlorosis virus
P: None of the above. | [P; M; K] |
<Instruct>: Given the context 'CBSV was also detected in the perennial species Manihot glaziovii (DNA-barcoded in this study) in Tanzania, which revealed the first virus reservoir other than cassava.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cbsv; manihot glaziovii; cassava]
<Options>: A: cassis cornuta (linnaeus, 1758) (aka cassis cornuta)
B: beet chlorosis virus
C: cassia arida (aka senna arida)
D: manihot glaziovii
E: acmaea cassis (aka lottia cassis)
F: marlierea glazioviana
G: schizachyrium glaziovii
H: quiina glaziovii
I: csv (aka cocksfoot streak virus) (aka cocksfoot streak virus)
J: bsbv (aka beet soil-borne virus) (aka beet soil-borne virus)
K: cassia aphylla (aka senna aphylla)
L: ucbsv (aka ugandan cassava brown streak virus)
M: sicyonia brevirostris associated circular virus
N: apodanthera glaziovii
O: None of the above. | [O; D; O] |
<Instruct>: Given the context 'CBSV was also detected in the perennial species Manihot glaziovii (DNA-barcoded in this study) in Tanzania, which revealed the first virus reservoir other than cassava.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cbsv; manihot glaziovii; cassava]
<Options>: A: cassava (aka manihot esculenta)
B: manihot glaziovii
C: cbastvirus
D: cassia sophera (aka senna sophera)
E: cassia charlesiana (aka senna charlesiana)
F: sickingia glaziovii (aka simira glaziovii)
G: bovine serum-associated circular virus
H: cassia arida (aka senna arida)
I: gomesa glaziovii
J: csv (aka cocksfoot streak virus) (aka cocksfoot streak virus)
K: quiina glaziovii
L: ucbsv (aka ugandan cassava brown streak virus)
M: bsbv (aka beet soil-borne virus) (aka beet soil-borne virus)
N: cassis cornuta (linnaeus, 1758) (aka cassis cornuta)
O: marlierea glazioviana
P: None of the above. | [P; B; A] |
<Instruct>: Given the context 'The method for detection of CBSV and UCBSV described in this study has important applications for plant quarantine, resistance breeding of cassava, and studies on epidemiology and control of CBSD in East Africa.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cbsv; ucbsv; cassava]
<Options>: A: sopaboc virus
B: cassis
C: ucbsv (aka ugandan cassava brown streak virus)
D: sorghum chlorotic spot virus (sgcsv) (aka sorghum chlorotic spot virus)
E: cscsv (aka cassava colombian symptomless virus)
F: cbastvirus
G: cassava (aka manihot esculenta)
H: purging cassia (aka cassia fistula)
I: umbre virus (umbre orthobunyavirus) (aka umbre virus)
J: vicia cassia
K: beet chlorosis virus
L: chrococunb virus
M: beet black scorch virus
N: canavalia cassidea
O: None of the above. | [O; C; G] |
<Instruct>: Given the context 'The method for detection of CBSV and UCBSV described in this study has important applications for plant quarantine, resistance breeding of cassava, and studies on epidemiology and control of CBSD in East Africa.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cbsv; ucbsv; cassava]
<Options>: A: csv (aka cocksfoot streak virus) (aka cocksfoot streak virus)
B: simian bocavirus
C: ucbsv (aka ugandan cassava brown streak virus)
D: chrocurosk virus
E: sulfolobales beppu virus 1
F: cassia
G: colombian potato soil-borne virus (cpsbv) (aka colombian potato soil-borne virus)
H: cassis cornuta (linnaeus, 1758) (aka cassis cornuta)
I: cbastvirus
J: cassava (aka manihot esculenta)
K: cassia tropica (aka senna tropica)
L: chrococunb virus
M: bsbv (aka beet soil-borne virus) (aka beet soil-borne virus)
N: purging cassia (aka cassia fistula)
O: None of the above. | [O; C; J] |
<Instruct>: Given the context 'The method for detection of CBSV and UCBSV described in this study has important applications for plant quarantine, resistance breeding of cassava, and studies on epidemiology and control of CBSD in East Africa.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cbsv; ucbsv; cassava]
<Options>: A: cassava (aka manihot esculenta)
B: chrococunb virus
C: ucbsv (aka ugandan cassava brown streak virus)
D: sgcsv (aka sorghum chlorotic spot virus)
E: bovine serum-associated circular virus
F: purging cassia (aka cassia fistula)
G: urdbean crinivirus
H: beet severe curly top virus
I: bellingshausen virus
J: barstukas virus
K: cassia tropica (aka senna tropica)
L: acmaea cassis (aka lottia cassis)
M: canavalia cassidea
N: beet soil-borne virus (bsbv (aka beet soil-borne virus))
O: None of the above. | [O; C; A] |
<Instruct>: Given the context 'Spatio-temporal variation in territory quality and oxidative status: a natural experiment in the Seychelles warbler (Acrocephalus sechellensis).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [seychelles warbler; acrocephalus sechellensis]
<Options>: A: yellow-throated warbler (aka setophaga dominica)
B: bay-breasted warbler (aka setophaga castanea)
C: gynura sechellensis
D: arctic warbler (aka phylloscopus borealis)
E: tarenna sechellensis
F: eurasian reed warbler (aka acrocephalus scirpaceus)
G: champsodon sechellensis
H: canada warbler (aka cardellina canadensis)
I: acrocephalus sechellensis (ellisia sechellensis) (aka acrocephalus sechellensis)
J: cuclotocephalus secundus
K: None of the above. | [I; I] |
<Instruct>: Given the context 'Spatio-temporal variation in territory quality and oxidative status: a natural experiment in the Seychelles warbler (Acrocephalus sechellensis).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [seychelles warbler; acrocephalus sechellensis]
<Options>: A: cymoninus sechellensis
B: barred warbler (aka sylvia nisoria)
C: mabuya sechellensis (aka trachylepis sechellensis)
D: yellow-rumped warbler (aka setophaga coronata)
E: carausius sechellensis
F: grey-capped warbler (aka eminia lepida)
G: ellisia sechellensis (aka acrocephalus sechellensis)
H: cuclotocephalus secundus
I: hooded warbler (aka setophaga citrina)
J: sulphur-breasted warbler (aka phylloscopus ricketti)
K: None of the above. | [G; G] |
<Instruct>: Given the context 'Here, we investigate the association between territory quality (measured through food availability) and oxidative stress in the Seychelles warbler (Acrocephalus sechellensis).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [seychelles warbler; acrocephalus sechellensis]
<Options>: A: rufous-vented warbler (aka devioeca papuana)
B: hooded warbler (aka setophaga citrina)
C: eurasian reed warbler (aka acrocephalus scirpaceus)
D: hermit warbler (aka setophaga occidentalis)
E: champsodon sechellensis
F: sardinian warbler (aka curruca melanocephala)
G: timonius sechellensis
H: tarenna sechellensis
I: ellisia sechellensis (aka acrocephalus sechellensis)
J: grandisonia sechellensis (hypogeophis sechellensis) (aka grandisonia sechellensis)
K: None of the above. | [I; I] |
<Instruct>: Given the context 'Here, we investigate the association between territory quality (measured through food availability) and oxidative stress in the Seychelles warbler (Acrocephalus sechellensis).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [seychelles warbler; acrocephalus sechellensis]
<Options>: A: enteropogon sechellensis
B: yellow warbler (aka setophaga petechia)
C: copsychus sechellarum
D: telenomus sechellensis
E: ellisia sechellensis (aka acrocephalus sechellensis)
F: sardinian warbler (aka curruca melanocephala)
G: arctic warbler (aka phylloscopus borealis)
H: yellow-rumped warbler (aka setophaga coronata)
I: palm warbler (aka setophaga palmarum)
J: cuclotocephalus secundus
K: None of the above. | [E; E] |
<Instruct>: Given the context 'Here, we investigate the association between territory quality (measured through food availability) and oxidative stress in the Seychelles warbler (Acrocephalus sechellensis).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [seychelles warbler; acrocephalus sechellensis]
<Options>: A: yellow warbler (aka setophaga petechia)
B: sardinian warbler (aka curruca melanocephala)
C: cuclotocephalus secundus
D: telenomus sechellensis
E: yellow-rumped warbler (aka setophaga coronata)
F: enteropogon sechellensis
G: copsychus sechellarum
H: arctic warbler (aka phylloscopus borealis)
I: palm warbler (aka setophaga palmarum)
J: None of the above. | [J; J] |
<Instruct>: Given the context 'Seychelles warblers are insectivorous birds that inhabit a fixed feeding territory year round.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [seychelles warbler]
<Options>: A: plain-tailed warbler (aka phylloscopus soror)
B: yellow-rumped warbler (aka setophaga coronata)
C: hooded warbler (aka setophaga citrina)
D: black-poll warbler (aka setophaga striata)
E: yellow warbler (aka setophaga petechia)
F: None of the above. | [F] |
<Instruct>: Given the context 'Surface and flagella morphology of the motile form of Chromera velia revealed by field-emission scanning electron microscopy.
Chromera velia (Chromerida; Alveolata) is an autotrophic protist isolated from stony corals.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [chromera velia]
<Options>: A: triodia vella
B: poecilia velifera (mollienesia velifera) (aka poecilia velifera)
C: chromera velia ccmp2878
D: chromera velia (alveolata sp. rbm-2007) (aka chromera velia)
E: theileria velifera
F: None of the above. | [D] |
<Instruct>: Given the context 'Ch. velia possesses a chloroplast thought to be most closely related to the apicoplasts of non-photosynthetic apicomplexa.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ch. velia]
<Options>: A: rhyacophila velora
B: chromera velia ccmp2878
C: heliconia velloziana
D: velia
E: heteromallus cavicola
F: None of the above. | [F] |
<Instruct>: Given the context 'Phylogenetic analyses place Ch. velia as a close relative of parasitic apicomplexa and predatory colpodellids.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ch. velia]
<Options>: A: astatotilapia velifer (aka haplochromis velifer)
B: chauhanellus velum
C: cirsium velatum (cnicus velatus) (aka cirsium velatum)
D: acremoniella velata (aka harzia velata)
E: hovea arnhemica
F: None of the above. | [F] |
<Instruct>: Given the context 'We have used field-emission scanning electron microscopy of cells sputter-coated with gold or chromium and non-coated cells to characterise the surface ultrastructure of the motile form of Ch. velia.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ch. velia]
<Options>: A: chthonius alpicola
B: hovea arnhemica
C: haplochromis velifer (astatotilapia velifer) (aka haplochromis velifer)
D: heliconia velloziana
E: chromera velia ccmp2878
F: None of the above. | [F] |
<Instruct>: Given the context 'In overall morphology the biflagellated Ch. velia cells resemble the colpodellid Colpodella edax, but with some notable differences.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ch. velia; colpodella edax]
<Options>: A: entobdella australis (aka neoentobdella australis)
B: candida edax (aka [candida] edax)
C: colpodella angusta
D: coltricia velutina
E: conocybe velata (galera velata) (aka conocybe velata)
F: colpodella edax (aka alphamonas edax)
G: chauhanellus velum
H: bodo edax
I: velia
J: hovea arnhemica
K: None of the above. | [K; F] |
<Instruct>: Given the context 'In overall morphology the biflagellated Ch. velia cells resemble the colpodellid Colpodella edax, but with some notable differences.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ch. velia; colpodella edax]
<Options>: A: eremophila fallax
B: heteromallus cavicola
C: coltricia velutina
D: galera velata (aka conocybe velata)
E: hovea arnhemica
F: conogethes evaxalis
G: verrucaria vainioi
H: epeolus fallax
I: colocasia fallax
J: colpodella edax (aka alphamonas edax)
K: None of the above. | [K; J] |
<Instruct>: Given the context 'The ventral side of the flagellated Ch. velia cell has two grooves extending from the anterior flagella insertion point with a ridge rising towards the anterior apex of the cell.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ch. velia]
<Options>: A: cirsium velatum (cnicus velatus) (aka cirsium velatum)
B: astatotilapia velifer (aka haplochromis velifer)
C: chauhanellus velum
D: hovea arnhemica
E: rhyacophila velora
F: None of the above. | [F] |
<Instruct>: Given the context 'This new ultrastructural information for Ch. velia allowed us to emend its diagnosis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ch. velia]
<Options>: A: chauhanellus velum
B: chthonius alpicola
C: coltricia velutina
D: verrucaria vainioi
E: heliconia velloziana
F: None of the above. | [F] |
<Instruct>: Given the context 'Tracking a century of global expansion and evolution of HIV to drive understanding and to combat disease.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv]
<Options>: A: aids virus (aka human immunodeficiency virus 2)
B: human immunodeficiency virus type i hiv-1 (aka human immunodeficiency virus 1)
C: human immunodeficiency virus 3 (hiv (aka human immunodeficiency virus 3))
D: aids virus (aka human immunodeficiency virus)
E: None of the above. | [D] |
<Instruct>: Given the context 'Since the isolation of HIV, multiple transmissions are thought to have occurred between man and other old-world primates.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv]
<Options>: A: aids virus (aka human immunodeficiency virus 2)
B: human immunodeficiency virus type 1 hiv-1 (aka human immunodeficiency virus 1)
C: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
D: hiv (aka human immunodeficiency virus 3) (aka human immunodeficiency virus 3)
E: None of the above. | [C] |
<Instruct>: Given the context 'Assessment of samples from apes and human beings with African equatorial forest ancestry has traced the origin of HIV-1 to chimpanzees, and dated its most recent common ancestor to 1908.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; hiv-1; chimpanzees]
<Options>: A: pediculus humanus (human louse) (aka pediculus humanus)
B: aids virus (aka human immunodeficiency virus)
C: human immunodeficiency virus type 1, hiv-1 (aka human immunodeficiency virus 1)
D: panolopus
E: panurus
F: human (aka homo sapiens)
G: hominidae (great apes) (aka hominidae)
H: panilla aroa
I: papus
J: chimpanzee (aka pan troglodytes)
K: human immunodeficiency virus type 1 (kb-1 isolate)
L: sphaeria humana (aka sordaria humana)
M: homo (humans) (aka homo)
N: None of the above. | [F; C; J] |
<Instruct>: Given the context 'Assessment of samples from apes and human beings with African equatorial forest ancestry has traced the origin of HIV-1 to chimpanzees, and dated its most recent common ancestor to 1908.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; hiv-1; chimpanzees]
<Options>: A: pan paniscus (pygmy chimpanzee) (aka pan paniscus)
B: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
C: hiv (aka human immunodeficiency virus 1) (aka human immunodeficiency virus 1)
D: aper aethiopicus (aka phacochoerus aethiopicus)
E: pediculus humanus corporis (pediculus humanus humanus) (aka pediculus humanus corporis)
F: panurus
G: gymnopleurus humanus
H: homo sapiens (human) (aka homo sapiens)
I: papus
J: human immunodeficiency virus type 1 (kb-1 isolate)
K: chimpanzee (aka pan troglodytes)
L: hominidae (great apes) (aka hominidae)
M: glossus humanus (cardium humanum) (aka glossus humanus)
N: None of the above. | [H; C; K] |
<Instruct>: Given the context 'Assessment of samples from apes and human beings with African equatorial forest ancestry has traced the origin of HIV-1 to chimpanzees, and dated its most recent common ancestor to 1908.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; hiv-1; chimpanzees]
<Options>: A: human immunodeficiency virus type 1 (kb-1 isolate)
B: chimpanzees (aka pan)
C: carcharhinus humani
D: chimpanzee (aka pan troglodytes)
E: pan troglodytes verus
F: human immunodeficiency virus type 1, hiv-1 (aka human immunodeficiency virus 1)
G: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
H: macrobiotus sapiens
I: pediculus humanus (human louse) (aka pediculus humanus)
J: panilla aroa
K: panurus
L: human (aka homo sapiens)
M: great apes (aka hominidae)
N: None of the above. | [L; F; D] |
<Instruct>: Given the context 'The evolution of HIV-1 has been rapid, which has resulted in a complex classification, worldwide spread, and intermixing of strains; at least 48 circulating recombinant forms are currently identified.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: human immunodeficiency virus type-1 hiv-1 (aka human immunodeficiency virus 1)
B: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
C: human immunodeficiency virus type 1 (kb-1 isolate)
D: None of the above. | [A] |
<Instruct>: Given the context 'In addition to posing a nearly insurmountable challenge for diagnosis, treatment, vaccine development, and prevention, this extreme and divergent evolution has led to differences in virulence between HIV-1 groups, subtypes, or both.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: aids virus (aka human immunodeficiency virus)
B: human immunodeficiency virus type 1 (kb-1 isolate)
C: human immunodeficiency virus 1 hiv-1 (aka human immunodeficiency virus 1)
D: None of the above. | [C] |
<Instruct>: Given the context 'Coincidental changes in human migration in the Congo river basin also affected spread of disease.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: macrobiotus sapiens
B: glossus humanus (cardium humanum) (aka glossus humanus)
C: homo sapiens (human) (aka homo sapiens)
D: great apes (aka hominidae)
E: sphaeria humana (aka sordaria humana)
F: None of the above. | [C] |
<Instruct>: Given the context 'Research over the past 25 years and advances in genomic sequencing methods, such as deep DNA sequencing, have greatly improved understanding and analysis of the thousands to millions of full infectious HIV-1 genomes.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: human immunodeficiency virus type 1 (kb-1 isolate)
B: human immunodeficiency virus type-1 hiv-1 (aka human immunodeficiency virus 1)
C: human immunodeficiency virus (hiv (aka human immunodeficiency virus))
D: None of the above. | [B] |
<Instruct>: Given the context 'Role of lupeol synthase in Lotus japonicus nodule formation.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lotus japonicus]
<Options>: A: lasiochilus japonicus
B: labrax japonicus (aka lateolabrax japonicus)
C: lotus latifolius
D: lotus japonicus (lotus corniculatus var. japonicus) (aka lotus japonicus)
E: lotus simonae
F: None of the above. | [D] |
<Instruct>: Given the context 'Here, we investigated the role of lupeol synthase, encoded by OSC3, and its product, lupeol, in developing roots and nodules of the model legume Lotus japonicus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lotus japonicus]
<Options>: A: lotus simonae
B: lasiochilus japonicus
C: lotus glaber (aka lotus tenuis)
D: lotus japonicus (lotus corniculatus var. japonicus) (aka lotus japonicus)
E: latilus japonicus (aka branchiostegus japonicus)
F: None of the above. | [D] |
<Instruct>: Given the context 'The expression patterns of OSC3 in different developmental stages of uninfected roots and in roots infected with Mesorhizobium loti were determined.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mesorhizobium loti]
<Options>: A: rhizobium gallicum
B: mesorhizobium ciceri (rhizobium ciceri) (aka mesorhizobium ciceri)
C: mesorhizobium loti (rhizobium loti) (aka mesorhizobium loti)
D: mesorhizobium plurifarium
E: mesorhizobium delmotii
F: None of the above. | [C] |
<Instruct>: Given the context 'Functional analysis, in which transgenic L. japonicus roots silenced for OSC3 were generated, was performed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [l. japonicus]
<Options>: A: lycodes japonicus
B: leiobunum japonicum (liobunum japonicum) (aka leiobunum japonicum)
C: loligo japonica (aka loliolus japonica)
D: lathyrus japonicus (beach-pea) (aka lathyrus japonicus)
E: lasianthus japonicus
F: None of the above. | [F] |
<Instruct>: Given the context 'Exogenous application of lupeol to M. loti-infected wild-type plants provided further evidence for a negative regulatory effect of lupeol on the expression of ENOD40.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. loti]
<Options>: A: myolaimus mycophilus
B: rhizobium loti (aka mesorhizobium loti)
C: moraxella lincolnii
D: mycobacterium lentiflavum
E: marasmiellus lucidus
F: None of the above. | [B] |
<Instruct>: Given the context 'The synthesis of lupeol in L. japonicus roots and nodules can be solely attributed to OSC3.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [l. japonicus]
<Options>: A: laqueus japonicus
B: litsea japonica
C: thelepus japonicus
D: lasius japonicus (lasius (lasius) japonicus) (aka lasius japonicus)
E: lathyrus japonicus (beach-pea) (aka lathyrus japonicus)
F: None of the above. | [F] |
<Instruct>: Given the context 'Based on the Robetta prediction, the human transcriptional factors E2F-4 and DP2 were identified as the most likely structural homologs of RteC. We made alanine substitutions within the putative DNA binding helix 3 region of RteC. Assays of orf2c::uidA activation by alanine mutants indicated', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: human body louse (aka pediculus humanus corporis)
B: neandertal (aka homo sapiens neanderthalensis)
C: human louse (aka pediculus humanus)
D: human (aka homo sapiens)
E: hominidae (great apes) (aka hominidae)
F: None of the above. | [D] |
<Instruct>: Given the context 'Genetic and molecular characterization of a blue light photoreceptor MGWC-1 in Magnaporth oryzae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [magnaporth oryzae]
<Options>: A: pleospora oryzae (aka phaeosphaeria oryzae)
B: magnaporthe grisea (aka pyricularia grisea)
C: magnaporthe poae (aka magnaporthiopsis poae)
D: magnaporthe rhizophila (aka magnaporthiopsis rhizophila)
E: pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002) (aka pyricularia oryzae)
F: None of the above. | [E] |
<Instruct>: Given the context 'Utilizing the model pathosystem Magnaporthe oryzae-Oryza sativa, we found a significant light-dependent disease suppression.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [magnaporthe oryzae; oryza sativa]
<Options>: A: monotospora oryzae (aka nigrospora oryzae)
B: oryza sativa (asian cultivated rice) (aka oryza sativa)
C: oryza
D: australian wild rice (aka oryza meridionalis)
E: red rice (aka oryza longistaminata)
F: oryza nivara
G: pestalotiopsis oryzae
H: magnaporthe oryzae (aka pyricularia oryzae)
I: paraphaeosphaeria oryzae
J: magnaporthe grisea (aka pyricularia grisea)
K: None of the above. | [H; B] |
<Instruct>: Given the context 'Utilizing the model pathosystem Magnaporthe oryzae-Oryza sativa, we found a significant light-dependent disease suppression.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [magnaporthe oryzae; oryza sativa]
<Options>: A: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
B: oryza
C: asian cultivated rice (aka oryza sativa)
D: african wild rice (aka oryza barthii)
E: magnaporthe oryzae (aka pyricularia oryzae)
F: oryza nivara
G: magnaporthe salvinii (aka nakataea oryzae)
H: monotospora oryzae (aka nigrospora oryzae)
I: magnaporthe rhizophila (aka magnaporthiopsis rhizophila)
J: african rice (aka oryza glaberrima)
K: None of the above. | [E; C] |
<Instruct>: Given the context 'Our genetic data suggest that the blue-light receptor MGWC-1 in M. oryzae is involved in light-dependent disease suppression during the dark-phase (disease-conducive light condition) immediately after pathogen-host contact.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. oryzae]
<Options>: A: monotospora oryzae (aka nigrospora oryzae)
B: pestalotiopsis oryzae
C: magnaporthe oryzae (aka pyricularia oryzae)
D: rhizobium oryzae (aka xaviernesmea oryzae)
E: chitinophaga oryzae
F: None of the above. | [C] |
<Instruct>: Given the context 'Sensing "darkness" is accomplished by MGWC-1, a blue-light receptor in M. oryzae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. oryzae]
<Options>: A: methyloterricola oryzae
B: eurotium oryzae (aka aspergillus oryzae)
C: pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002) (aka pyricularia oryzae)
D: microbispora oryzae
E: pestalotiopsis oryzae
F: None of the above. | [C] |
<Instruct>: Given the context 'Sensing "darkness" is accomplished by MGWC-1, a blue-light receptor in M. oryzae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [m. oryzae]
<Options>: A: eurotium oryzae (aka aspergillus oryzae)
B: methyloterricola oryzae
C: pestalotiopsis oryzae
D: microbispora oryzae
E: None of the above. | [E] |
<Instruct>: Given the context '2. The clown anemonefish, Amphiprion percula, forms simple societies that live in close association with sea anemones, Heteractis magnifica.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [amphiprion percula; heteractis magnifica]
<Options>: A: amphiporus texanus
B: radianthus magnifica (aka heteractis magnifica)
C: haworthia magnifica
D: triangula percae
E: amphiporus punctatulus (aka nipponnemertes punctatula)
F: macromia magnifica
G: orange clownfish (aka amphiprion percula)
H: tumeochrysa magnifica
I: hypogymnia magnifica
J: percis nebulosa (aka parapercis nebulosa)
K: None of the above. | [G; B] |
<Instruct>: Given the context '2. The clown anemonefish, Amphiprion percula, forms simple societies that live in close association with sea anemones, Heteractis magnifica.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [amphiprion percula; heteractis magnifica]
<Options>: A: macronema percitans
B: hesperopilio magnificus
C: orange clownfish (aka amphiprion percula)
D: achrioptera magnifica
E: european perch (aka perca fluviatilis)
F: radianthus paumotensis (aka heteractis magnifica)
G: haworthia magnifica
H: percina nebulosa (aka percina bimaculata)
I: hydatophylax magnus
J: triangula percae
K: None of the above. | [C; F] |
<Instruct>: Given the context 'Here, we use data from a well-studied population of A. percula to determine the major predictors of reproductive success of dominant pairs in this species.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. percula]
<Options>: A: amphiprion percula (picasso clownfish) (aka amphiprion percula)
B: anopheles parvus
C: perca fluviatilis (european perch) (aka perca fluviatilis)
D: polyporus alveoaris (aka neofavolus alveolaris)
E: aplysia parvula (little sea hare) (aka aplysia parvula)
F: None of the above. | [A] |
<Instruct>: Given the context 'Multiplex RT-PCR for rapid detection and differentiation of class I and class II Newcastle disease viruses.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [class i; class ii newcastle disease viruses]
<Options>: A: victoria group
B: iso hawaiiensis (hawaiian surf sardine) (aka iso hawaiiensis)
C: subgroup a
D: influenzavirus d (aka deltainfluenzavirus)
E: circovirus duck
F: newcastle disease virus (strain texas g.b./48)
G: ndv (aka avian paramyxovirus 1) (aka avian paramyxovirus 1)
H: helix innominata innominata (aka caseolus innominatus innominatus)
I: newcastle disease virus (strain h)
J: subspecies
K: None of the above. | [G; G] |
<Instruct>: Given the context 'Multiplex RT-PCR for rapid detection and differentiation of class I and class II Newcastle disease viruses.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [class i; class ii newcastle disease viruses]
<Options>: A: duck influenza virus
B: newcastle disease virus (aka avian paramyxovirus 1)
C: marine group i
D: helix innominata innominata (aka caseolus innominatus innominatus)
E: victoria group
F: newcastle disease virus (strain kansas)
G: duck circovirus
H: infraclass
I: subclass
J: exotic newcastle disease virus (newcastle disease virus end strain) (aka exotic newcastle disease virus)
K: None of the above. | [B; B] |
<Instruct>: Given the context 'A multiplex RT-PCR was developed for detection and differentiation of class I and class II strains of Newcastle disease virus (NDV).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [class i; class ii strains of newcastle disease virus (ndv)]
<Options>: A: escherichia coli strain iai1 (aka escherichia coli iai1)
B: subclass
C: norovirus genogroup i (aka norovirus gi)
D: marine group i thaumarchaeote
E: duck influenza virus
F: deltainfluenzavirus (influenzavirus d) (aka deltainfluenzavirus)
G: subspecies
H: newcastle disease virus (strain t53)
I: newcastle disease virus (strain kansas)
J: newcastle disease virus ndv (aka avian paramyxovirus 1)
K: None of the above. | [J; J] |
<Instruct>: Given the context 'A multiplex RT-PCR was developed for detection and differentiation of class I and class II strains of Newcastle disease virus (NDV).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [class i; class ii strains of newcastle disease virus (ndv)]
<Options>: A: helix innominata (aka caseolus innominatus)
B: subgroup a
C: newcastle disease virus b1 (newcastle disease virus strain b1) (aka newcastle disease virus b1)
D: infraclass
E: newcastle disease virus end strain (aka exotic newcastle disease virus)
F: duck influenza virus
G: norovirus genogroup i (aka norovirus gi)
H: newcastle disease virus ndv (aka avian paramyxovirus 1)
I: subspecies
J: newcastle disease virus (strain t53)
K: None of the above. | [H; H] |
<Instruct>: Given the context 'The results obtained from the multiplex RT-PCR for a total of 67 NDV field isolates obtained in 2009 were consistent with those obtained by nucleotide sequencing and phylogenetic analysis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ndv]
<Options>: A: common seabream nervous necrosis virus
B: de nodal virus
C: exotic newcastle disease virus (newcastle disease virus end strain) (aka exotic newcastle disease virus)
D: newcastle disease virus (aka avian paramyxovirus 1)
E: denalis virus
F: None of the above. | [D] |
<Instruct>: Given the context 'A phylogenetic tree based on the partial sequences of the F gene revealed that the 67 field isolates of NDV could be divided into two classes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ndv]
<Options>: A: newcastle disease virus ndv (aka avian paramyxovirus 1)
B: exotic newcastle disease virus (newcastle disease virus end strain) (aka exotic newcastle disease virus)
C: muninn virus
D: denalis virus
E: common seabream nervous necrosis virus
F: None of the above. | [A] |
<Instruct>: Given the context 'Twenty-seven NDV isolates were grouped into class I, and two genotypes were identified.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ndv; class i]
<Options>: A: exotic newcastle disease virus (newcastle disease virus end strain) (aka exotic newcastle disease virus)
B: noveria virus
C: subclass
D: helix innominata (aka caseolus innominatus)
E: genogroup 1 isolates (aka norovirus genogroup 1 isolates)
F: gom arc i cluster (gulf of mexico archaea group i) (aka gom arc i cluster)
G: ndv (aka avian paramyxovirus 1) (aka avian paramyxovirus 1)
H: denalis virus
I: denwin virus
J: marine group i
K: None of the above. | [G; G] |
<Instruct>: Given the context 'Twenty-seven NDV isolates were grouped into class I, and two genotypes were identified.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ndv; class i]
<Options>: A: tomato necrotic dwarf virus
B: alloeutypa
C: west nile virus (wnv (aka west nile virus))
D: duck influenza virus
E: victoria group
F: genogroup 1 isolates (aka norovirus genogroup 1 isolates)
G: ndv (aka avian paramyxovirus 1) (aka avian paramyxovirus 1)
H: superclass
I: exotic newcastle disease virus (newcastle disease virus end strain) (aka exotic newcastle disease virus)
J: infraclass
K: None of the above. | [G; G] |
<Instruct>: Given the context 'Most of the class I isolates were determined to be of genotype 3, with the exception of isolate NDV09-034, which belonged to genotype 2.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [class i; ndv09-034]
<Options>: A: helix innominata (aka caseolus innominatus)
B: flumine dicistrovirus 1
C: newcastle disease virus ndv (aka avian paramyxovirus 1)
D: class
E: helix innominata innominata (aka caseolus innominatus innominatus)
F: flumine virga-like virus 1
G: avian orthoavulavirus 9 (aka avian paramyxovirus 9)
H: avian virus yt-2014
I: subclass
J: marine group i
K: None of the above. | [C; C] |
<Instruct>: Given the context 'Most of the class I isolates were determined to be of genotype 3, with the exception of isolate NDV09-034, which belonged to genotype 2.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [class i; ndv09-034]
<Options>: A: alloeutypa
B: ndv (aka avian paramyxovirus 1) (aka avian paramyxovirus 1)
C: helix innominata innominata (aka caseolus innominatus innominatus)
D: flumine dicistrovirus 7
E: marine group i thaumarchaeote
F: subspecies
G: flumine nodavirus 12
H: helix innominata (aka caseolus innominatus)
I: newcastle disease virus (connecticut/9-12-60)
J: avian orthoavulavirus 9 (aka avian paramyxovirus 9)
K: None of the above. | [B; B] |
<Instruct>: Given the context 'Forty class II NDV isolates were divided into three genotypes, namely genotype VII (27 isolates), genotype I (2 isolates) and genotype II (11 isolates).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [class ii ndv isolates]
<Options>: A: newcastle disease virus ndv (aka avian paramyxovirus 1)
B: dianthovirus trifolii
C: orthoavulavirus italiense
D: orthorubulavirus mammalis
E: avian astrovirus
F: None of the above. | [A] |
<Instruct>: Given the context 'In conclusion, this multiplex RT-PCR provides a new assay for rapid detection and differentiation of both classes of NDV isolates.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ndv isolates]
<Options>: A: denwin virus
B: noveria virus
C: newcastle disease virus ndv (aka avian paramyxovirus 1)
D: duck rhabdovirus
E: birdsnestvirus
F: None of the above. | [C] |
<Instruct>: Given the context 'This study compared six automated nucleic acid extraction systems and one manual kit for their ability to recover nucleic acids from human nasal wash specimens spiked with five respiratory pathogens, representing Gram-positive bacteria (Streptococcus pyogenes), Gram-negative bacteria (Legionella pneumophila), DNA viruses (adenovirus), segmented RNA viruses (human influenza virus A), and non-segmented RNA viruses (respiratory syncytial virus).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; streptococcus pyogenes; legionella pneumophila; human influenza virus a]
<Options>: A: streptococcus mutans
B: legionella pneumophila
C: influenza a virus (human influenza a virus) (aka influenza a virus)
D: influenzavirus a (aka alphainfluenzavirus)
E: legionella donaldsonii ('legionella donaldsonii') (aka legionella donaldsonii)
F: legionella pneumophila subsp. pneumophila
G: streptococcus erysipelatos (aka streptococcus pyogenes)
H: carcharhinus humani
I: neanderthal man (aka homo sapiens neanderthalensis)
J: bacillus pyogenes (aka trueperella pyogenes)
K: legionella antarctica
L: streptococcus sanguinis
M: pediculus humanus corporis (pediculus humanus humanus) (aka pediculus humanus corporis)
N: streptococcus suis
O: homo sapiens (human) (aka homo sapiens)
P: swine influenza virus
Q: alphainfluenzavirus influenzae
R: h1n1 swine influenza virus
S: macrobiotus sapiens
T: legionella pneumophila serogroup 1
U: None of the above. | [O; G; B; C] |
<Instruct>: Given the context 'This study compared six automated nucleic acid extraction systems and one manual kit for their ability to recover nucleic acids from human nasal wash specimens spiked with five respiratory pathogens, representing Gram-positive bacteria (Streptococcus pyogenes), Gram-negative bacteria (Legionella pneumophila), DNA viruses (adenovirus), segmented RNA viruses (human influenza virus A), and non-segmented RNA viruses (respiratory syncytial virus).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; streptococcus pyogenes; legionella pneumophila; human influenza virus a]
<Options>: A: legionella pneumophila subsp. pneumophila
B: streptococcus scarlatinae (aka streptococcus pyogenes)
C: hominidae (great apes) (aka hominidae)
D: human body louse (aka pediculus humanus corporis)
E: swine influenza virus
F: legionella pneumophila serogroup 7
G: human (aka homo sapiens)
H: streptococcus anthracis ('streptococcus anthracis') (aka streptococcus anthracis)
I: cardium humanum (aka glossus humanus)
J: human influenza a virus (aka influenza a virus)
K: legionella antarctica
L: h1n1 swine influenza virus
M: influenzavirus c (aka gammainfluenzavirus)
N: sphaeria humana (aka sordaria humana)
O: streptococcus bovis (aka streptococcus equinus)
P: legionella parisiensis (legionella parisensis) (aka legionella parisiensis)
Q: legionella pneumophila
R: streptococcus ovis
S: alphainfluenzavirus influenzae
T: micrococcus pyogenes (aka staphylococcus aureus)
U: None of the above. | [G; B; Q; J] |
<Instruct>: Given the context 'This study compared six automated nucleic acid extraction systems and one manual kit for their ability to recover nucleic acids from human nasal wash specimens spiked with five respiratory pathogens, representing Gram-positive bacteria (Streptococcus pyogenes), Gram-negative bacteria (Legionella pneumophila), DNA viruses (adenovirus), segmented RNA viruses (human influenza virus A), and non-segmented RNA viruses (respiratory syncytial virus).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; streptococcus pyogenes; legionella pneumophila; human influenza virus a]
<Options>: A: legionella pneumophila subsp. pneumophila
B: fluav (aka influenza a virus)
C: carcharhinus humani
D: bacillus pyogenes (aka trueperella pyogenes)
E: legionella donaldsonii ('legionella donaldsonii') (aka legionella donaldsonii)
F: streptococcus parasuis
G: alphainfluenzavirus (influenzavirus a) (aka alphainfluenzavirus)
H: streptococcus caprinus (aka streptococcus gallolyticus)
I: legionella pneumophila
J: h1n1 swine influenza virus
K: mycoplasma pneumophila
L: streptococcus sanguinis
M: swine influenza virus
N: neandertal man (aka homo sapiens neanderthalensis)
O: pediculus humanus (human louse) (aka pediculus humanus)
P: streptococcus scarlatinae (aka streptococcus pyogenes)
Q: legionella pneumophila serogroup 6
R: influenza virus type c (aka influenza c virus)
S: homo (humans) (aka homo)
T: human (aka homo sapiens)
U: None of the above. | [T; P; I; B] |
<Instruct>: Given the context 'This study compared six automated nucleic acid extraction systems and one manual kit for their ability to recover nucleic acids from human nasal wash specimens spiked with five respiratory pathogens, representing Gram-positive bacteria (Streptococcus pyogenes), Gram-negative bacteria (Legionella pneumophila), DNA viruses (adenovirus), segmented RNA viruses (human influenza virus A), and non-segmented RNA viruses (respiratory syncytial virus).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; streptococcus pyogenes; legionella pneumophila; human influenza virus a]
<Options>: A: legionella jordanis
B: streptococcus sanguinis
C: legionella israelensis
D: streptococcus pneumoniae (diplococcus pneumoniae) (aka streptococcus pneumoniae)
E: streptococcus caprinus (aka streptococcus gallolyticus)
F: sphaeria humana (aka sordaria humana)
G: influenza virus type b (aka influenza b virus)
H: legionella pneumophila
I: legionella donaldsonii ('legionella donaldsonii') (aka legionella donaldsonii)
J: human body louse (aka pediculus humanus corporis)
K: influenzavirus a (aka alphainfluenzavirus)
L: influenza a virus (a/china)
M: streptococcus pyogenes (streptococcus erysipelatos) (aka streptococcus pyogenes)
N: macrobiotus sapiens
O: human influenza a virus (aka influenza a virus)
P: neandertal (aka homo sapiens neanderthalensis)
Q: streptococcus suis
R: influenzavirus c (aka gammainfluenzavirus)
S: human (aka homo sapiens)
T: legionella pneumophila serogroup 8
U: None of the above. | [S; M; H; O] |
<Instruct>: Given the context 'This study compared six automated nucleic acid extraction systems and one manual kit for their ability to recover nucleic acids from human nasal wash specimens spiked with five respiratory pathogens, representing Gram-positive bacteria (Streptococcus pyogenes), Gram-negative bacteria (Legionella pneumophila), DNA viruses (adenovirus), segmented RNA viruses (human influenza virus A), and non-segmented RNA viruses (respiratory syncytial virus).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [respiratory syncytial virus]
<Options>: A: hrsv (aka human respiratory syncytial virus) (aka human respiratory syncytial virus)
B: orsv (aka ovine respiratory syncytial virus) (aka ovine respiratory syncytial virus)
C: bovine respiratory syncytial virus
D: respiratory syncytial virus rs (aka respiratory syncytial virus)
E: respiratory syncytial virus type a (respiratory syncytial virus subsp. subgroup a) (aka respiratory syncytial virus type a)
F: None of the above. | [D] |
<Instruct>: Given the context 'All automated systems recovered L. pneumophila and adenovirus DNA equivalently.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [l. pneumophila]
<Options>: A: legionella pneumophila subsp. pneumophila
B: legionella pneumophila serogroup 8
C: legionella pneumophila serogroup 2
D: legionella pneumophila
E: pasteurella
F: None of the above. | [D] |
<Instruct>: Given the context 'However, the MagNA Pure protocol demonstrated more than 4-fold higher DNA recovery from the S. pyogenes than other methods.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [s. pyogenes]
<Options>: A: streptococcus equinus (streptococcus bovis) (aka streptococcus equinus)
B: staphylococcus pyogenes aureus (aka staphylococcus aureus)
C: streptococcus mutans
D: streptococcus hemolyticus (aka streptococcus pyogenes)
E: streptococcus suis
F: None of the above. | [D] |
<Instruct>: Given the context 'The KingFisher mL and easyMAG protocols provided 1- to 3-log wider linearity and extracted 3- to 4-fold more RNA from the human influenza virus and respiratory syncytial virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human influenza virus; respiratory syncytial virus]
<Options>: A: influenzavirus c (aka gammainfluenzavirus)
B: human respiratory syncytial virus a (respiratory syncytial virus group a) (aka human respiratory syncytial virus a)
C: avian influenza virus (aka unidentified influenza virus)
D: influenza virus type b (aka influenza b virus)
E: bovine respiratory syncytial virus
F: gammainfluenzavirus influenzae
G: human rsv (aka human respiratory syncytial virus)
H: ovine respiratory syncytial virus rsv (aka ovine respiratory syncytial virus)
I: rsv (aka respiratory syncytial virus) (aka respiratory syncytial virus)
J: fluav (aka influenza a virus)
K: None of the above. | [J; I] |
<Instruct>: Given the context 'The KingFisher mL and easyMAG protocols provided 1- to 3-log wider linearity and extracted 3- to 4-fold more RNA from the human influenza virus and respiratory syncytial virus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human influenza virus; respiratory syncytial virus]
<Options>: A: influenza virus type b (aka influenza b virus)
B: alphainfluenzavirus influenzae
C: respiratory syncytial virus rs (aka respiratory syncytial virus)
D: ovine respiratory syncytial virus (orsv (aka ovine respiratory syncytial virus))
E: human respiratory syncytial virus b (respiratory syncytial virus group b) (aka human respiratory syncytial virus b)
F: bovine respiratory syncytial virus
G: influenza c viruses (aka influenza c virus)
H: respiratory syncytial virus type a (respiratory syncytial virus subsp. subgroup a) (aka respiratory syncytial virus type a)
I: influenza virus type a (aka influenza a virus)
J: alphainfluenzavirus (influenzavirus a) (aka alphainfluenzavirus)
K: None of the above. | [I; C] |
<Instruct>: Given the context 'Detection of Tomato black ring virus by real-time one-step RT-PCR.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tomato black ring virus]
<Options>: A: potato black ringspot virus
B: tomato yellow ring virus
C: tomato black ring virus (strain mj)
D: tbrv (aka tomato black ring virus) (aka tomato black ring virus)
E: tobacco yellow virus
F: None of the above. | [D] |
<Instruct>: Given the context 'A TaqMan-based real-time one-step RT-PCR assay was developed for the rapid detection of Tomato black ring virus (TBRV), a significant plant pathogen which infects a wide range of economically important crops.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tomato black ring virus; tbrv]
<Options>: A: tomato black ring virus (strain s) (aka beet ringspot virus)
B: tomato black ring virus (nepovirus tomato blackring virus tbrv) (aka tomato black ring virus)
C: brucella virus tb (aka perisivirus tb)
D: tomato yellow ring virus
E: tomato white ringspot virus
F: bacillus tuberculosis gallinarum (aka mycobacterium avium)
G: bacillus virus troll (aka bequatrovirus troll)
H: tomato black ring virus (strain c)
I: bovine torovirus
J: None of the above. | [B; B] |
<Instruct>: Given the context 'A TaqMan-based real-time one-step RT-PCR assay was developed for the rapid detection of Tomato black ring virus (TBRV), a significant plant pathogen which infects a wide range of economically important crops.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tomato black ring virus; tbrv]
<Options>: A: tomato yellow blotch virus
B: tomato necrotic ringspot virus
C: mycobacterium tuberculosis tbr12
D: tulip breaking virus, tbv (aka tulip breaking virus)
E: lettuce ring necrosis virus
F: taro bacilliform virus (taro bacilliform badnavirus) (aka taro bacilliform virus)
G: nepovirus tomato blackring virus tbrv (aka tomato black ring virus)
H: bacillus tuberculosis gallinarum (aka mycobacterium avium)
I: tobacco yellow virus
J: None of the above. | [G; G] |
<Instruct>: Given the context 'The assay amplified all isolates of TBRV tested, but no amplification was observed from the RNA of other nepovirus species or healthy host plants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tbrv]
<Options>: A: tbrv (aka tomato black ring virus) (aka tomato black ring virus)
B: tobacco bushy top virus (tbtv (aka tobacco bushy top virus))
C: bovine torovirus
D: mycobacterium tuberculosis tbr12
E: tulip-breaking virus tbv (aka tulip breaking virus)
F: None of the above. | [A] |
<Instruct>: Given the context 'The detection limit of the assay was estimated to be around nine copies of the TBRV target region in total RNA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tbrv]
<Options>: A: tbrv (aka tomato black ring virus) (aka tomato black ring virus)
B: mycobacterium tuberculosis tbr12
C: bacillus virus troll (aka bequatrovirus troll)
D: tbbv (aka tulip band breaking virus) (aka tulip band breaking virus)
E: taro bacilliform virus (taro bacilliform badnavirus) (aka taro bacilliform virus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Cross-genotypic polyclonal anti-HCV antibodies from human ascitic fluid.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcv; human]
<Options>: A: hcv-hun (aka hepatitis c virus (isolate hunan))
B: human (aka homo sapiens)
C: hepatitis c virus hcv-kf (hepatitis c virus (isolate hcv-kf)) (aka hepatitis c virus hcv-kf)
D: carcharhinus humani
E: macrobiotus sapiens
F: hepatovirus c
G: sphaeria humana (aka sordaria humana)
H: hhav (aka human hepatitis a virus) (aka human hepatitis a virus)
I: great apes (aka hominidae)
J: human hepatitis virus c hcv (aka hepacivirus hominis)
K: None of the above. | [J; B] |
<Instruct>: Given the context 'Cross-genotypic polyclonal anti-HCV antibodies from human ascitic fluid.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcv; human]
<Options>: A: macrobiotus sapiens
B: pediculus humanus corporis (pediculus humanus humanus) (aka pediculus humanus corporis)
C: hepatitis c virus subtype 6v
D: hepatitis c virus hcv-kf (hepatitis c virus (isolate hcv-kf)) (aka hepatitis c virus hcv-kf)
E: human (aka homo sapiens)
F: hepatitis c virus (isolate 1)
G: hcv (aka hepacivirus hominis) (aka hepacivirus hominis)
H: gymnopleurus humanus
I: great apes (aka hominidae)
J: human hepatitis a virus (hhav (aka human hepatitis a virus))
K: None of the above. | [G; E] |
<Instruct>: Given the context 'Many anti-HCV antibodies are available, but more are needed for research and clinical applications.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcv]
<Options>: A: hepatovirus c
B: hepatitis c virus (isolate japanese)
C: hcv (aka hepacivirus hominis) (aka hepacivirus hominis)
D: human hepatitis b virus (aka hepatitis b virus)
E: hcv-h (aka hepatitis c virus (isolate h))
F: None of the above. | [C] |
<Instruct>: Given the context 'Many anti-HCV antibodies are available, but more are needed for research and clinical applications.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcv]
<Options>: A: hepatitis c virus (isolate japanese)
B: hcv-h (aka hepatitis c virus (isolate h))
C: hepatovirus c
D: human hepatitis b virus (aka hepatitis b virus)
E: None of the above. | [E] |
<Instruct>: Given the context 'Ascitic fluid from 29 HCV patients was screened by ELISA for anti-HCV antibodies against three viral proteins: core, NS4B, and NS5A. Significant patient-to-patient variability in anti-HCV antibody titers was observed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcv]
<Options>: A: hepatitis c virus (isolate japanese)
B: human hepatitis a virus (hhav (aka human hepatitis a virus))
C: hcv (aka hepacivirus hominis) (aka hepacivirus hominis)
D: hepatovirus c
E: human hepatitis b virus (aka hepatitis b virus)
F: None of the above. | [C] |
<Instruct>: Given the context 'Total ascitic fluid IgG purified by Protein-A chromatography reacted with HCV proteins in immunoblots, cell extracts, and replicon-expressing cells.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hcv]
<Options>: A: human hepatitis c virus hcv (aka hepacivirus hominis)
B: hepatitis c virus (isolate 1)
C: hcv-h (aka hepatitis c virus (isolate h))
D: hepatitis c virus subtype 6v
E: hcv-hun (aka hepatitis c virus (isolate hunan))
F: None of the above. | [A] |
<Instruct>: Given the context 'Ascitic fluid is an abundant source of human polyclonal cross-genotypic antibodies that can be used as an alternative to blood.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: carcharhinus humani
B: pediculus humanus corporis (pediculus humanus humanus) (aka pediculus humanus corporis)
C: cardium humanum (aka glossus humanus)
D: gymnopleurus humanus
E: human (aka homo sapiens)
F: None of the above. | [E] |
<Instruct>: Given the context 'This study shows the utility of selectively purifying human polyclonal antibodies from ascitic fluid.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: human louse (aka pediculus humanus)
B: homo sapiens (human) (aka homo sapiens)
C: carcharhinus humani
D: gymnopleurus humanus
E: neanderthal man (aka homo sapiens neanderthalensis)
F: None of the above. | [B] |
<Instruct>: Given the context 'A versatile vector for the production of pseudotyped viruses expressing gp120 antigens from different clades of primary HIV-1 isolates.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: human immunodeficiency virus type 1 (kb-1 isolate)
B: aids virus (aka human immunodeficiency virus)
C: human immunodeficiency virus type i hiv-1 (aka human immunodeficiency virus 1)
D: None of the above. | [C] |
<Instruct>: Given the context 'A novel HIV-1 Env expression vector (SF162-Z) was developed by introducing two new cloning sites on the backbone of an existing vector that produces a full length Env from HIV-1 SF162 isolate.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
B: human immunodeficiency virus type-1 hiv-1 (aka human immunodeficiency virus 1)
C: human immunodeficiency virus type 1 (kb-1 isolate)
D: None of the above. | [B] |
<Instruct>: Given the context 'Env with matching gp120 antigens from HIV-1 isolates of different genetic clades.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv-1]
<Options>: A: human immunodeficiency virus type 1 (kb-1 isolate)
B: aids virus (aka human immunodeficiency virus 1)
C: aids virus (aka human immunodeficiency virus)
D: None of the above. | [B] |
<Instruct>: Given the context 'This system is useful for testing the neutralizing sensitivity of partial env gene products frequently identified in viral quasi species in patients infected with HIV or when only partial gp120 gene products are available.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [hiv]
<Options>: A: human immunodeficiency virus 1 hiv-1 (aka human immunodeficiency virus 1)
B: hiv (aka human immunodeficiency virus) (aka human immunodeficiency virus)
C: aids virus (aka human immunodeficiency virus 2)
D: hiv (aka human immunodeficiency virus 3) (aka human immunodeficiency virus 3)
E: None of the above. | [B] |
<Instruct>: Given the context 'Thresher sharks also showed directed movement (at scales of 400-1900 m), and adult threshers were able to orient at greater scales than juveniles, which may suggest that learning improves the ability to perform directed walks.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [threshers]
<Options>: A: thintail thresher (aka alopias vulpinus)
B: bush pipit (aka anthus caffer)
C: harvesters (aka miletinae)
D: foxtail (aka alopecurus pratensis)
E: thresher sharks (aka alopiinae <sharks & rays>)
F: None of the above. | [A] |
<Instruct>: Given the context 'Blacktip reef sharks had small home ranges, high site fidelity and showed no evidence of oriented movements at large scales.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [blacktip reef sharks]
<Options>: A: blacktip reef shark (aka carcharhinus melanopterus)
B: black catfish (aka neosilurus ater)
C: silvertip shark (aka carcharhinus albimarginatus)
D: whitenose shark (aka nasolamia velox)
E: grey reef shark (aka carcharhinus amblyrhynchos)
F: None of the above. | [A] |
<Instruct>: Given the context 'Blacktip reef sharks had small home ranges, high site fidelity and showed no evidence of oriented movements at large scales.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [blacktip reef sharks]
<Options>: A: whitenose shark (aka nasolamia velox)
B: grey reef shark (aka carcharhinus amblyrhynchos)
C: black catfish (aka neosilurus ater)
D: silvertip shark (aka carcharhinus albimarginatus)
E: None of the above. | [E] |
<Instruct>: Given the context 'Methanoregula boonei gen. nov., sp. nov., an acidiphilic methanogen isolated from an acidic peat bog.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [methanoregula boonei gen. nov., sp. nov.]
<Options>: A: methanoregula sp.
B: methanoculleus bourgense (aka methanoculleus bourgensis)
C: methanoregula boonei 6a8 (candidatus methanoregula boonei 6a8) (aka methanoregula boonei 6a8)
D: methanogenium boonei
E: candidatus methanoregula boonei (aka methanoregula boonei)
F: None of the above. | [E] |
<Instruct>: Given the context 'A novel acidiphilic, hydrogenotrophic methanogen, designated strain 6A8(T), was isolated from an acidic (pH 4.0-4.5) and ombrotrophic (rain-fed) bog located near Ithaca, NY, USA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [6a8]
<Options>: A: ava
B: trama
C: alpha proteobacterium 20/6a8
D: uncultured bacterium (human infant) n158a
E: uncultured archaeon cro-6a
F: None of the above. | [F] |
<Instruct>: Given the context 'To our knowledge, strain 6A8(T) is one of the most acidiphilic (lowest pH optimum) and salt-sensitive methanogens in pure culture.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [6a8]
<Options>: A: alpha proteobacterium 20/6a8
B: h6n6 subtype
C: adeno-associated virus - 6 (adeno-associated virus type 6) (aka adeno-associated virus - 6)
D: ava
E: h6n9 subtype
F: None of the above. | [F] |
<Instruct>: Given the context 'It is proposed that a new genus and species be established for this organism, Methanoregula boonei gen. nov., sp. nov.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [methanoregula boonei gen. nov., sp. nov.]
<Options>: A: methanogenium boonei
B: methanoregula boonei strain 6a8 (aka methanoregula boonei 6a8)
C: candidatus methanoregula boonei (aka methanoregula boonei)
D: methanoregula sp.
E: methaniculleus olentangyi (aka methanoculleus bourgensis)
F: None of the above. | [C] |
<Instruct>: Given the context 'The type strain of Methanoregula boonei is 6A8(T)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [methanoregula boonei; 6a8]
<Options>: A: bacterium 6bk
B: candidatus methanoregula boonei (aka methanoregula boonei)
C: clostridium difficile p6 (aka clostridioides difficile p6)
D: cva-6 (aka coxsackievirus a6)
E: uncultured bacterium (human infant) n158a
F: methanococcus aeolicus
G: methanococcus voltaei (aka methanococcus voltae)
H: methanococcus igneus (aka methanotorris igneus)
I: bacillus methanicus (aka methylomonas methanica)
J: h6n6 subtype
K: None of the above. | [B; B] |
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