go_id
string
go_numeric_id
int64
name
string
namespace
string
definition
string
definition_xrefs
list
comment
string
synonyms
list
synonym_scopes
list
alt_ids
list
subsets
list
xrefs
list
is_a_ids
list
relationship_edges
list
relationship_types
list
relationship_target_ids
list
parent_ids
list
intersection_of
list
union_of
list
disjoint_from
list
replaced_by
list
consider
list
property_values
list
created_by
string
creation_date
string
is_obsolete
bool
in_go_basic
bool
split_bucket
int64
GO:0005461
5,461
UDP-glucuronate transmembrane transporter activity
molecular_function
Enables the transfer of a UDP-glucuronic acid from one side of a membrane to the other. UDP-glucuronic acid is a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate.
[ "GOC:ai", "GOC:mtg_transport", "ISBN:0815340729" ]
null
[ "UDP-glucuronic acid transmembrane transporter activity" ]
[ "EXACT" ]
[]
[]
[ "Reactome:R-HSA-174368 \"SLC35D1 hexamer transports UDP-GlcA, UDP-GlcNAc from cytosol to endoplasmic reticulum lumen\"", "Reactome:R-HSA-5603297 \"Defective SLC35D1 does not transport UDP-GlcA, UDPGlcNAc\"", "Reactome:R-HSA-9912889 \"SLC35D2 exchanges UDP-GlcA for UMP\"" ]
[ "GO:0015165", "GO:0046943" ]
[ "part_of GO:0015787" ]
[ "part_of" ]
[ "GO:0015787" ]
[ "GO:0015165", "GO:0015787", "GO:0046943" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29382\" xsd:anyURI" ]
null
null
false
true
9
GO:0005462
5,462
UDP-N-acetylglucosamine transmembrane transporter activity
molecular_function
Enables the transfer of a UDP-N-acetylglucosamine from one side of a membrane to the other. N-acetylglucosamine is a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
[ "GOC:ai", "GOC:mtg_transport", "ISBN:0815340729" ]
null
[]
[]
[]
[]
[ "Reactome:R-HSA-5653622 \"Defective SLC35A3 does not exchange UDP-GlcNAc for UMP\"", "Reactome:R-HSA-741450 \"SLC35A3 exchanges UDP-GlcNAc for UMP\"", "Reactome:R-HSA-742354 \"SLC35B4 mediates the transport of UDP-N-acetylglucosamine into the Golgi lumen\"" ]
[ "GO:0015165" ]
[ "part_of GO:1990569" ]
[ "part_of" ]
[ "GO:1990569" ]
[ "GO:0015165", "GO:1990569" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0005463
5,463
UDP-N-acetylgalactosamine transmembrane transporter activity
molecular_function
Enables the transfer of a N-acetylgalactosamine from one side of a membrane to the other. N-acetylgalactosamine is a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.
[ "GOC:ai", "GOC:mtg_transport", "ISBN:0815340729" ]
null
[]
[]
[]
[]
[]
[ "GO:0015165" ]
[ "part_of GO:0015789" ]
[ "part_of" ]
[ "GO:0015789" ]
[ "GO:0015165", "GO:0015789" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0005464
5,464
UDP-xylose transmembrane transporter activity
molecular_function
Enables the transfer of UDP-xylose from one side of a membrane to the other. UDP-xylose is a substance composed of xylose in glycosidic linkage with uridine diphosphate.
[ "GOC:ai" ]
null
[]
[]
[]
[]
[ "Reactome:R-HSA-742373 \"SLC35B4 mediates the transport of UDP-xylose into the Golgi lumen\"" ]
[ "GO:0015165" ]
[ "part_of GO:0015790" ]
[ "part_of" ]
[ "GO:0015790" ]
[ "GO:0015165", "GO:0015790" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0005468
5,468
obsolete small-molecule carrier or transporter
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:curators" ]
This term was made obsolete because it does not provide a useful functional classification.
[ "small-molecule carrier or transporter" ]
[ "EXACT" ]
[ "GO:0005453", "GO:0005454" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005215" ]
[]
null
null
true
true
4
GO:0005469
5,469
succinate:fumarate antiporter activity
molecular_function
Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: succinate(out) + fumarate(in) = succinate(in) + fumarate(out).
[ "TC:2.A.29.13.1" ]
null
[]
[]
[]
[]
[ "RHEA:29323" ]
[ "GO:0015138", "GO:0015141", "GO:0015297" ]
[]
[]
[]
[ "GO:0015138", "GO:0015141", "GO:0015297" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:29323", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27278\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
8
GO:0005471
5,471
ATP:ADP antiporter activity
molecular_function
Catalysis of the reaction: ATP(out) + ADP(in) = ATP(in) + ADP(out).
[ "TC:2.A.29.1.1" ]
null
[ "adenine nucleotide translocase", "ADP/ATP carrier protein", "ADP/ATP translocase", "ATP/ADP exchange", "ATP/ADP exchanger" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[ "GO:0005349" ]
[]
[ "RHEA:34999" ]
[ "GO:0005347", "GO:0015217", "GO:0015297" ]
[]
[]
[]
[ "GO:0005347", "GO:0015217", "GO:0015297" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch RHEA:34999", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27278\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
3
GO:0005476
5,476
carnitine:O-acyl-L-carnitine antiporter activity
molecular_function
Catalysis of the reaction: carnitine (mitochondrial) + O-acyl-L-carnitine (cytoplasm) = carnitine (cytoplasm) + O-acyl-L-carnitine (mitochondrial).
[ "PMID:9032458" ]
null
[ "carnitine/acyl carnitine carrier activity", "carnitine:acyl carnitine carrier activity", "fatty acyl carnitine carrier" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[ "Reactome:R-HSA-200424 \"Exchange of acylcarnitine and carnitine across the inner mitochondrial membrane\"" ]
[ "GO:0015226", "GO:0015227", "GO:0015297" ]
[]
[]
[]
[ "GO:0015226", "GO:0015227", "GO:0015297" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0005479
5,479
obsolete vacuolar assembly
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:curators" ]
This term was made obsolete because it represents a biological process and not a molecular function.
[ "vacuolar assembly" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0007033" ]
[]
[]
null
null
true
true
5
GO:0005481
5,481
obsolete vesicle fusion
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:curators" ]
This term was made obsolete because it represents a biological process and not a molecular function.
[ "vesicle fusion" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0006906", "GO:0016189", "GO:0016192", "GO:0019817" ]
[]
null
null
true
true
6
GO:0005482
5,482
obsolete vesicle targeting
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:curators" ]
This term was made obsolete because it represents a biological process and not a molecular function.
[ "vesicle targeting" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0006903", "GO:0016080" ]
[]
null
null
true
true
6
GO:0005483
5,483
soluble NSF attachment protein activity
molecular_function
Binding to both N-ethylmaleimide-sensitive fusion protein (NSF) and a cis-SNARE complex (i.e. a SNARE complex in which all proteins are associated with the same membrane) and increasing the ATPase activity of NSF, thereby allowing ATP hydrolysis by NSF to disassemble the cis-SNARE complex.
[ "GOC:mah", "PMID:14570579", "PMID:15556857" ]
null
[ "SNAP" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0030674" ]
[]
[]
[]
[ "GO:0030674" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16807\" xsd:anyURI" ]
null
null
false
true
4
GO:0005484
5,484
SNAP receptor activity
molecular_function
Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion.
[ "GOC:mah", "PMID:14570579" ]
null
[ "Q-SNARE activity", "R-SNARE activity", "SNAP-25", "SNARE", "t-SNARE activity", "v-SNARE activity" ]
[ "NARROW", "NARROW", "NARROW", "EXACT", "NARROW", "NARROW" ]
[ "GO:0005485", "GO:0005486" ]
[ "goslim_chembl" ]
[]
[ "GO:0030674" ]
[ "part_of GO:0061025", "part_of GO:0140522" ]
[ "part_of", "part_of" ]
[ "GO:0061025", "GO:0140522" ]
[ "GO:0030674", "GO:0061025", "GO:0140522" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31564\" xsd:anyURI" ]
null
null
false
true
8
GO:0005488
5,488
binding
molecular_function
The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
[ "GOC:ceb", "GOC:mah", "ISBN:0198506732" ]
null
[ "ligand" ]
[ "NARROW" ]
[]
[ "goslim_pir", "goslim_plant" ]
[ "Wikipedia:Binding_(molecular)" ]
[ "GO:0003674" ]
[]
[]
[]
[ "GO:0003674" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0005489
5,489
obsolete electron transporter activity
molecular_function
OBSOLETE. Enables the directed movement of electrons into, out of, within or between cells.
[ "GOC:ai" ]
This term was made obsolete because the activity described by the definition does not exist.
[ "class I cytochrome c", "class II cytochrome c", "class IIa cytochrome c", "class IIb cytochrome c", "class III cytochrome c", "class IV cytochrome c", "cytochrome b", "cytochrome b5", "cytochrome c3 (tetraheme)", "cytochrome c554", "cytochrome c7 (triheme)", "cytochrome d", "diheme class I ...
[ "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "EXACT", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0009055" ]
[]
[]
null
null
true
true
1
GO:0005490
5,490
obsolete cytochrome P450
molecular_function
OBSOLETE. A cytochrome b that has a sulfur atom ligated to the iron of the prosthetic group (heme-thiolate); enzymes:typically monooxygenases acting on lipophilic substrates.
[ "ISBN:0198547684" ]
This term was made obsolete because its definition was changed and because it represents a gene product.
[ "cytochrome P450" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
5
GO:0005496
5,496
steroid binding
molecular_function
Binding to a steroid, any of a large group of substances that have in common a ring system based on 1,2-cyclopentanoperhydrophenanthrene.
[ "GOC:jl", "ISBN:0198506732" ]
null
[]
[]
[]
[ "goslim_pir" ]
[]
[ "GO:0008289" ]
[]
[]
[]
[ "GO:0008289" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0005497
5,497
androgen binding
molecular_function
Binding to an androgen, a male sex hormone.
[ "GOC:jl" ]
null
[]
[]
[]
[]
[]
[ "GO:0042562" ]
[]
[]
[]
[ "GO:0042562" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0005499
5,499
vitamin D binding
molecular_function
Binding to vitamin D, any of a group of related, fat-soluble compounds that are derived from delta-5,7 steroids and play a central role in calcium metabolism. Specific forms of vitamin D include calciferol (ergocalciferol; vitamin D2) and cholecalciferol (calciol; vitamin D3).
[ "GOC:mah", "ISBN:0471331309" ]
null
[ "calciferol binding", "cholecalciferol binding", "ergocalciferol binding" ]
[ "NARROW", "NARROW", "NARROW" ]
[]
[]
[]
[ "GO:0005496", "GO:0019842" ]
[]
[]
[]
[ "GO:0005496", "GO:0019842" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0005500
5,500
juvenile hormone binding
molecular_function
Binding to a juvenile hormone, a sesquiterpenoid derivative that function to maintain the larval state of insects at molting and that may be required for other processes, e.g. oogenesis.
[ "GOC:jl", "ISBN:0198506732" ]
null
[]
[]
[]
[]
[]
[ "GO:0019840", "GO:0042562" ]
[]
[]
[]
[ "GO:0019840", "GO:0042562" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0005501
5,501
retinoid binding
molecular_function
Binding to a retinoid, a class of isoprenoids that contain or are derived from four prenyl groups linked head-to-tail. Retinoids include retinol and retinal and structurally similar natural derivatives or synthetic compounds, but need not have vitamin A activity.
[ "GOC:jl", "ISBN:0198506732" ]
null
[]
[]
[]
[]
[ "Reactome:R-HSA-2454113 \"RBP3 transports 11cRAL to rod photoreceptor outer segment\"", "Reactome:R-HSA-2464809 \"RBP3 regulates the transport of atROL from ROS to RPE\"", "Reactome:R-HSA-2465934 \"11cROL translocates from Muller cells to cone photoreceptor cells\"", "Reactome:R-HSA-2465938 \"RBP3 regulates a...
[ "GO:0019840" ]
[]
[]
[]
[ "GO:0019840" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0005502
5,502
11-cis retinal binding
molecular_function
Binding to 11-cis retinal, an isomer of retinal that plays an important role in the visual process in most vertebrates. 11-cis retinal combines with opsin in the rods (scotopsin) to form rhodopsin or visual purple. Retinal is one of the three compounds that makes up vitamin A.
[ "PMID:24403072" ]
null
[ "11-cis retinaldehyde binding", "11-cis-retinal binding", "vitamin A binding" ]
[ "EXACT", "NARROW", "BROAD" ]
[]
[]
[]
[ "GO:0016918" ]
[]
[]
[]
[ "GO:0016918" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0005503
5,503
all-trans retinal binding
molecular_function
Binding to all-trans retinal, a compound that plays an important role in the visual process in most vertebrates. All-trans retinal (trans r., visual yellow) results from the bleaching of rhodopsin by light, in which the 11-cis form is converted to the all-trans form. Retinal is one of the forms of vitamin A.
[ "GOC:curators" ]
null
[ "all-trans retinaldehyde binding", "trans retinal binding", "visual yellow binding", "vitamin A binding", "xanthopsin" ]
[ "EXACT", "EXACT", "EXACT", "BROAD", "RELATED" ]
[]
[]
[]
[ "GO:0016918" ]
[]
[]
[]
[ "GO:0016918" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/14750\" xsd:anyURI" ]
null
null
false
true
1
GO:0005504
5,504
fatty acid binding
molecular_function
Binding to a fatty acid, an aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
[ "ISBN:0198506732" ]
null
[]
[]
[]
[]
[]
[ "GO:0008289", "GO:0033293" ]
[]
[]
[]
[ "GO:0008289", "GO:0033293" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0005505
5,505
obsolete heavy metal binding
molecular_function
OBSOLETE. Interacting selectively with a heavy metal, a metal that can form a coordination bond with a protein, as opposed to an alkali or alkaline-earth metal that can only form an ionic bond; this definition includes the following biologically relevant heavy metals: Cd, Co, Cu, Fe, Hg, Mn, Mo, Ni, V, W, Zn.
[ "GOC:kd", "GOC:mah" ]
This term was made obsolete because 'heavy metal' is an ambiguous grouping term which has no set meaning (see Pure Appl. Chem. Vol. 74, No. 5, pp. 793-807, 2002, for more information).
[ "heavy metal binding" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0046872" ]
[]
null
null
true
true
1
GO:0005507
5,507
copper ion binding
molecular_function
Binding to a copper (Cu) ion.
[ "GOC:ai" ]
null
[ "copper binding", "copper/cadmium binding" ]
[ "EXACT", "BROAD" ]
[]
[]
[]
[ "GO:0046914" ]
[]
[]
[]
[ "GO:0046914" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0005508
5,508
obsolete copper/cadmium binding
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a composite function.
[ "copper/cadmium binding" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005507", "GO:0046870" ]
[]
null
null
true
true
6
GO:0005509
5,509
calcium ion binding
molecular_function
Binding to a calcium ion (Ca2+).
[ "GOC:ai" ]
null
[ "calcium ion storage activity" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0046872" ]
[]
[]
[]
[ "GO:0046872" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0005513
5,513
detection of calcium ion
biological_process
The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal.
[ "GOC:pg" ]
null
[ "Ca2+ ion detection", "calcium ion detection", "calcium ion sensing", "detection of Ca2+ ion" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009593", "GO:0051592" ]
[]
[]
[]
[ "GO:0009593", "GO:0051592" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0005514
5,514
obsolete calcium ion storage activity
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a biological process.
[ "calcium ion storage activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005509" ]
[]
null
null
true
true
3
GO:0005515
5,515
protein binding
molecular_function
Binding to a protein.
[ "GOC:curators" ]
null
[ "glycoprotein binding", "protein amino acid binding" ]
[ "NARROW", "EXACT" ]
[ "GO:0001948", "GO:0045308" ]
[ "goslim_candida", "goslim_chembl", "goslim_euk_cellular_processes_ribbon", "goslim_metagenomics", "goslim_pir", "goslim_plant", "goslim_plant_ribbon", "goslim_prokaryote_ribbon" ]
[ "Reactome:R-HSA-9866132 \"Intermediate II binds CYC1, UQCRC1, UQCRC2, UQCRH\"" ]
[ "GO:0005488" ]
[]
[]
[]
[ "GO:0005488" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0005516
5,516
calmodulin binding
molecular_function
Binding to calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
[ "GOC:krc" ]
null
[]
[]
[]
[ "goslim_chembl" ]
[ "Reactome:R-HSA-202110 \"eNOS:Caveolin-1 complex binds to CaM\"" ]
[ "GO:0005515" ]
[]
[]
[]
[ "GO:0005515" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0005517
5,517
obsolete calmodulin inhibitor activity
molecular_function
OBSOLETE. This term was not defined before being made obsolete.
[ "GOC:tb" ]
This term was made obsolete because it refers to a non-existent molecular function term, 'calmodulin activity'.
[ "calmodulin inhibitor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005516" ]
[]
null
null
true
true
7
GO:0005518
5,518
collagen binding
molecular_function
Binding to collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).
[ "GOC:ai", "ISBN:0198506732" ]
null
[]
[]
[]
[]
[]
[ "GO:0044877" ]
[]
[]
[]
[ "GO:0044877" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0005519
5,519
cytoskeletal regulatory protein binding
molecular_function
Binding to a protein involved in modulating the reorganization of the cytoskeleton.
[ "GOC:curators", "PMID:15163540" ]
null
[]
[]
[]
[]
[]
[ "GO:0008092" ]
[]
[]
[]
[ "GO:0008092" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0005521
5,521
lamin binding
molecular_function
Binding to lamin; any of a group of intermediate-filament proteins that form the fibrous matrix on the inner surface of the nuclear envelope.
[ "GOC:jl", "ISBN:0198506732" ]
null
[ "lamin/chromatin binding" ]
[ "BROAD" ]
[]
[]
[]
[ "GO:0005515" ]
[]
[]
[]
[ "GO:0005515" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0005522
5,522
profilin binding
molecular_function
Binding to profilin, an actin-binding protein that forms a complex with G-actin and prevents it from polymerizing to form F-actin.
[ "ISBN:0721662544" ]
null
[]
[]
[]
[]
[]
[ "GO:0005515" ]
[]
[]
[]
[ "GO:0005515" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0005523
5,523
tropomyosin binding
molecular_function
Binding to tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle.
[ "GOC:curators", "ISBN:0815316194" ]
null
[]
[]
[]
[]
[]
[ "GO:0008092" ]
[]
[]
[]
[ "GO:0008092" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0005527
5,527
macrolide binding
molecular_function
Binding to a macrolide, any of a large group of structurally related antibiotics produced by Streptomyces species.
[ "GOC:jl", "ISBN:0198506732" ]
null
[]
[]
[]
[]
[]
[ "GO:0005488" ]
[]
[]
[]
[ "GO:0005488" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0005528
5,528
FK506 binding
molecular_function
Binding to a 23-membered macrolide lactone FK506.
[ "GOC:jl" ]
null
[ "FK506-sensitive peptidyl-prolyl cis-trans isomerase" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0005527" ]
[]
[]
[]
[ "GO:0005527" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0005530
5,530
obsolete lectin
molecular_function
OBSOLETE. Lectins are proteins obtained particularly from the seeds of leguminous plants, but also from many other plant and animal sources, that have binding sites for specific mono or oligosaccharides in cell walls or membranes. They thereby change the physiology of the membrane to cause agglutination, mitosis, or ot...
[ "GOC:curators" ]
This term was made obsolete because it refers to a class of gene products.
[ "lectin" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0007157", "GO:0030246" ]
[]
null
null
true
true
4
GO:0005531
5,531
obsolete galactose binding lectin
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it refers to a class of gene products.
[ "galactose binding lectin" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005534", "GO:0007157" ]
[]
null
null
true
true
8
GO:0005532
5,532
obsolete mannose binding lectin
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it refers to a class of gene products.
[ "mannose binding lectin", "mannose receptor" ]
[ "EXACT", "RELATED" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005537", "GO:0007157" ]
[]
null
null
true
true
5
GO:0005533
5,533
obsolete N-acetylgalactosamine lectin
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it refers to a class of gene products.
[ "N-acetylgalactosamine lectin" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0007157", "GO:0046871" ]
[]
null
null
true
true
9
GO:0005534
5,534
galactose binding
molecular_function
Binding to aldohexose galactose (galacto-hexose), a common constituent of many oligo- and polysaccharides.
[ "GOC:jl", "ISBN:0198506732" ]
null
[ "galactose binding lectin" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0048029" ]
[]
[]
[]
[ "GO:0048029" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0005536
5,536
D-glucose binding
molecular_function
Binding to D-enantiomers of glucose.
[ "GOC:jl" ]
null
[ "glucose binding" ]
[ "BROAD" ]
[]
[]
[]
[ "GO:0048029" ]
[]
[]
[]
[ "GO:0048029" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0005537
5,537
D-mannose binding
molecular_function
Binding to mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
[ "GOC:jl", "ISBN:0192800981" ]
null
[ "mannose binding", "mannose binding lectin" ]
[ "BROAD", "RELATED" ]
[]
[ "goslim_chembl" ]
[ "Reactome:R-HSA-947991 \"Transport of glycoproteins with Man8 (or Man9) N-glycans to the Golgi\"" ]
[ "GO:0048029" ]
[]
[]
[]
[ "GO:0048029" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0005539
5,539
glycosaminoglycan binding
molecular_function
Binding to a glycan (polysaccharide) containing a substantial proportion of aminomonosaccharide residues.
[ "GOC:jl", "ISBN:0198506732" ]
null
[]
[]
[]
[ "goslim_chembl" ]
[]
[ "GO:0097367" ]
[]
[]
[]
[ "GO:0097367" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0005540
5,540
hyaluronic acid binding
molecular_function
Binding to hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine.
[ "GOC:jl" ]
null
[ "hyaluronan binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0031406" ]
[]
[]
[]
[ "GO:0031406" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0005541
5,541
obsolete acyl-CoA or acyl binding
molecular_function
OBSOLETE. Interacting selectively with acyl-CoA or acyl, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group, or any group formally derived by removal of a hydroxyl group from the acid function of an organic acid.
[ "GOC:jl", "ISBN:0198506732" ]
This term was made obsolete because it was replaced by more appropriate terms.
[ "acyl-CoA or acyl binding" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000035", "GO:0000062" ]
[]
null
null
true
true
2
GO:0005542
5,542
folic acid binding
molecular_function
Binding to folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines.
[ "GOC:jl", "ISBN:0198506732" ]
null
[ "folate binding", "vitamin B9 binding", "vitamin M binding" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0019842", "GO:0031406", "GO:0072341", "GO:1901363" ]
[]
[]
[]
[ "GO:0019842", "GO:0031406", "GO:0072341", "GO:1901363" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0005543
5,543
phospholipid binding
molecular_function
Binding to a phospholipid, a class of lipids containing phosphoric acid as a mono- or diester.
[ "ISBN:0198506732" ]
null
[]
[]
[]
[]
[]
[ "GO:0008289" ]
[]
[]
[]
[ "GO:0008289" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0005544
5,544
calcium-dependent phospholipid binding
molecular_function
Binding to a phospholipid, a class of lipids containing phosphoric acid as a mono- or diester, in the presence of calcium.
[ "GOC:jl" ]
null
[]
[]
[]
[]
[]
[ "GO:0005543" ]
[]
[]
[]
[ "GO:0005543" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0005546
5,546
phosphatidylinositol-4,5-bisphosphate binding
molecular_function
Binding to phosphatidylinositol-4,5-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 4' and 5' positions.
[ "GOC:bf", "GOC:jl" ]
null
[ "1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate binding", "phosphatidylinositol 4,5-bisphosphate binding", "PIP2 binding", "PtdIns(4,5)P2 binding" ]
[ "EXACT", "EXACT", "BROAD", "EXACT" ]
[]
[]
[]
[ "GO:1901981", "GO:1902936" ]
[]
[]
[]
[ "GO:1901981", "GO:1902936" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0005547
5,547
phosphatidylinositol-3,4,5-trisphosphate binding
molecular_function
Binding to phosphatidylinositol-3,4,5-trisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3', 4' and 5' positions.
[ "GOC:bf", "GOC:jl" ]
null
[ "PIP3 binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0043168", "GO:1901981" ]
[]
[]
[]
[ "GO:0043168", "GO:1901981" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0005548
5,548
obsolete phospholipid transporter activity
molecular_function
OBSOLETE. Enables the directed movement of phospholipids into, out of or within a cell, or between cells. Phospholipids are a class of lipids containing phosphoric acid as a mono- or diester.
[ "GOC:ai", "ISBN:0198506732" ]
This term was obsoleted because it refers to the substrate rather than to the transport mechanism as a primary classification.
[]
[]
[ "GO:0008497" ]
[]
[ "Reactome:R-HSA-216757 \"4xPALM-C-p-2S-ABCA1 tetramer transports PL from transport vesicle membrane to plasma membrane\"", "Reactome:R-HSA-382553 \"ABCA7:Apo1A-mediated phospholipid efflux\"", "Reactome:R-HSA-5678706 \"ABCB4 transports PC from plasma membrane to extracellular region\"", "Reactome:R-HSA-567874...
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0120014", "GO:0170055" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31454\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31460\" xsd:anyURI" ]
null
null
true
true
6
GO:0005550
5,550
pheromone binding
molecular_function
Binding to a pheromone, a substance, or characteristic mixture of substances, that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process.
[ "GOC:ai" ]
null
[]
[]
[]
[]
[]
[ "GO:0005549" ]
[]
[]
[]
[ "GO:0005549" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0005551
5,551
obsolete ubiquitin
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:curators" ]
This term was made obsolete because it represents a gene product.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0016567", "GO:0031386" ]
[]
null
null
true
true
4
GO:0005553
5,553
obsolete ubiquitin-ribosomal protein fusion protein
molecular_function
OBSOLETE. A protein encoded by some ubiquitin genes which consists of a single copy of ubiquitin fused to a ribosomal protein.
[ "ISBN:0198506732" ]
This term was made obsolete because it describes a gene product.
[ "ubiquitin-ribosomal protein fusion protein" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
7
GO:0005555
5,555
obsolete blood group antigen
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:mah" ]
This term was made obsolete because it represents a gene product, and because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity.
[ "blood group antigen" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
7
GO:0005557
5,557
obsolete lymphocyte antigen
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:mah" ]
This term was made obsolete because it represents a gene product, and because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity.
[ "lymphocyte antigen" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
6
GO:0005558
5,558
obsolete minor histocompatibility antigen
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:mah" ]
This term was made obsolete because it represents a gene product, and because describing something as an 'antigen' means that an organism can produce antibodies to it, which says nothing about the gene product activity.
[ "minor histocompatibility antigen" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
6
GO:0005559
5,559
obsolete ribozyme
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused.
[ "ribozyme" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
7
GO:0005561
5,561
obsolete nucleic acid
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused.
[ "nucleic acid" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
4
GO:0005562
5,562
obsolete RNA
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused.
[ "RNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
5
GO:0005563
5,563
obsolete transfer RNA
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:mah" ]
This term was made obsolete because it represents a gene product.
[ "transfer RNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0030533" ]
[]
[]
null
null
true
true
6
GO:0005564
5,564
obsolete cytosolic tRNA
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused.
[ "cytosolic tRNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
3
GO:0005565
5,565
obsolete mitochondrial tRNA
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
Note that this term was deleted from GO rather than being made obsolete and was restored to the ontology in Feb 2003 to ensure that the ID is not reused.
[ "mitochondrial tRNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
4
GO:0005566
5,566
obsolete ribosomal RNA
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:mah" ]
This term was made obsolete because it represents a gene product.
[ "ribosomal RNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003735", "GO:0005840" ]
[]
null
null
true
true
4
GO:0005567
5,567
obsolete cytosolic ribosomal RNA
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused.
[ "cytosolic ribosomal RNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
3
GO:0005568
5,568
obsolete mitochondrial rRNA
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
Note that this term was deleted from GO rather than being made obsolete and was restored to the ontology in Feb 2003 to ensure that the ID is not reused.
[ "mitochondrial rRNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
6
GO:0005569
5,569
obsolete small nucleolar RNA
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:mah" ]
This term was made obsolete because it represents gene products.
[ "small nucleolar RNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0030555" ]
[]
null
null
true
true
9
GO:0005570
5,570
obsolete small nuclear RNA
molecular_function
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:mah" ]
This term was made obsolete because it represents gene products.
[ "small nuclear RNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000375", "GO:0017069" ]
[]
null
null
true
true
7
GO:0005571
5,571
obsolete untranslated RNA
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused.
[ "untranslated RNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
1
GO:0005572
5,572
obsolete RNA polymerase II transcribed untranslated RNA
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused.
[ "RNA polymerase II transcribed untranslated RNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
8
GO:0005573
5,573
obsolete telomerase RNA
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:krc" ]
This term was made obsolete because it represents a gene product.
[ "telomerase RNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000332" ]
[]
[]
null
null
true
true
6
GO:0005574
5,574
obsolete DNA
cellular_component
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
Note that this term was deleted from GO and was restored to the ontology in Feb 2003 to ensure that the ID is not reused.
[ "DNA" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
7
GO:0005575
5,575
cellular_component
cellular_component
A location, relative to cellular compartments and structures, occupied by a macromolecular machine. There are three types of cellular components described in the gene ontology: (1) the cellular anatomical entity where a gene product carries out a molecular function (e.g., plasma membrane, cytoskeleton) or membrane-encl...
[ "GOC:pdt" ]
Note that, in addition to forming the root of the cellular component ontology, this term is recommended for the annotation of gene products whose cellular component is unknown. When this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotate...
[ "cell or subcellular entity", "cellular component", "subcellular entity" ]
[ "EXACT", "EXACT", "RELATED" ]
[ "GO:0008372" ]
[ "goslim_candida", "goslim_chembl", "goslim_metagenomics", "goslim_pir", "goslim_plant", "goslim_yeast" ]
[ "NIF_Subcellular:sao1337158144" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/17729\" xsd:anyURI" ]
null
null
false
true
8
GO:0005576
5,576
extracellular region
cellular_component
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
[ "GOC:curators" ]
Note that this term is intended to annotate gene products that are not attached to the cell surface. For gene products from multicellular organisms which are secreted from a cell but retained within the organism (i.e. released into the interstitial fluid or blood), consider the cellular component term 'extracellular sp...
[ "extracellular" ]
[ "EXACT" ]
[]
[ "goslim_agr", "goslim_candida", "goslim_chembl", "goslim_drosophila", "goslim_euk_cellular_processes_ribbon", "goslim_flybase_ribbon", "goslim_generic", "goslim_metagenomics", "goslim_mouse", "goslim_pir", "goslim_plant", "goslim_plant_ribbon", "goslim_prokaryote", "goslim_prokaryote_ribbo...
[ "Wikipedia:Extracellular" ]
[ "GO:0110165" ]
[]
[]
[]
[ "GO:0110165" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0005577
5,577
fibrinogen complex
cellular_component
A highly soluble, elongated protein complex found in blood plasma and involved in clot formation. It is converted into fibrin monomer by the action of thrombin. In the mouse, fibrinogen is a hexamer, 46 nm long and 9 nm maximal diameter, containing two sets of nonidentical chains (alpha, beta, and gamma) linked togethe...
[ "ISBN:0198547684" ]
null
[ "fibrinogen", "fibrinogen alpha chain", "fibrinogen beta chain", "fibrinogen gamma chain" ]
[ "EXACT", "NARROW", "NARROW", "NARROW" ]
[]
[]
[]
[ "GO:0140392" ]
[]
[]
[]
[ "GO:0140392" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0005579
5,579
membrane attack complex
cellular_component
A protein complex produced by sequentially activated components of the complement cascade inserted into a target cell membrane and forming a pore leading to cell lysis via ion and water flow.
[ "GOC:add", "ISBN:0198547684", "ISBN:068340007X", "ISBN:0781735149" ]
null
[ "MAC", "membrane attack complex protein alphaM chain", "membrane attack complex protein beta2 chain", "TCC", "terminal complement complex" ]
[ "EXACT", "NARROW", "NARROW", "EXACT", "EXACT" ]
[]
[]
[ "Wikipedia:Complement_membrane_attack_complex" ]
[ "GO:0046930", "GO:0098797" ]
[]
[]
[]
[ "GO:0046930", "GO:0098797" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0005581
5,581
collagen trimer
cellular_component
A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
[ "GOC:dos", "GOC:mah", "PMID:19693541", "PMID:21421911" ]
null
[]
[]
[]
[]
[ "Wikipedia:Collagen" ]
[ "GO:0032991" ]
[]
[]
[]
[ "GO:0032991" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0005582
5,582
collagen type XV trimer
cellular_component
A collagen homotrimer of alpha1(XV) chains; a chondroitin sulfate proteoglycan often found in specialized basement membranes where it bridges between fibrils.
[ "PMID:11158616", "PMID:11937714", "PMID:21421911" ]
null
[]
[]
[]
[]
[]
[ "GO:0140156" ]
[]
[]
[]
[ "GO:0140156" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0005583
5,583
fibrillar collagen trimer
cellular_component
Any triple helical collagen trimer that forms fibrils.
[ "PMID:21421911" ]
null
[]
[]
[]
[]
[]
[ "GO:0005581", "GO:0140392" ]
[ "part_of GO:0098643" ]
[ "part_of" ]
[ "GO:0098643" ]
[ "GO:0005581", "GO:0098643", "GO:0140392" ]
[ "GO:0005581", "part_of GO:0098643" ]
[]
[ "GO:0030936" ]
[]
[]
[]
null
null
false
true
7
GO:0005585
5,585
collagen type II trimer
cellular_component
A collagen homotrimer of alpha1(II) chains; type II collagen triple helices associate to form fibrils.
[ "PMID:21421911" ]
null
[]
[]
[]
[]
[ "Wikipedia:Collagen_type_II" ]
[ "GO:0005583" ]
[]
[]
[]
[ "GO:0005583" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0005586
5,586
collagen type III trimer
cellular_component
A collagen homotrimer of alpha1(III) chains; type III collagen triple helices associate to form fibrils.
[ "PMID:21421911" ]
null
[]
[]
[]
[]
[]
[ "GO:0005583" ]
[]
[]
[]
[ "GO:0005583" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0005587
5,587
collagen type IV trimer
cellular_component
A collagen heterotrimer containing type IV alpha chains; [alpha1(IV)]2alpha2(IV) trimers are commonly observed, although more type IV alpha chains exist and may be present in type IV trimers; type IV collagen triple helices associate to form 3 dimensional nets within basement membranes.
[ "PMID:19693541", "PMID:21421911" ]
null
[]
[]
[]
[]
[ "Wikipedia:Collagen_type_IV" ]
[ "GO:0098642" ]
[ "part_of GO:0140154" ]
[ "part_of" ]
[ "GO:0140154" ]
[ "GO:0098642", "GO:0140154" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30148\" xsd:anyURI" ]
null
null
false
true
6
GO:0005588
5,588
collagen type V trimer
cellular_component
A collagen heterotrimer containing type V alpha chains; [alpha1(V)]2alpha2(V) and alpha1(V)alpha2(V)alpha3(V) trimers have been observed; type V collagen triple helices associate to form fibrils.
[ "PMID:21421911" ]
null
[]
[]
[]
[]
[]
[ "GO:0005583" ]
[]
[]
[]
[ "GO:0005583" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0005589
5,589
collagen type VI trimer
cellular_component
A collagen heterotrimer containing type VI alpha chains in alpha1(VI)alpha2(VI)alpha3(VI) trimers; type VI collagen triple helices associate to form beaded fibrils.
[ "PMID:19693541", "PMID:21421911" ]
null
[]
[]
[]
[]
[]
[ "GO:0140158", "GO:0140392" ]
[ "part_of GO:0098647" ]
[ "part_of" ]
[ "GO:0098647" ]
[ "GO:0098647", "GO:0140158", "GO:0140392" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0005590
5,590
collagen type VII trimer
cellular_component
A collagen homotrimer of alpha1(VII) chains; type VII collagen triple helices form antiparallel dimer, which in turn associate laterally to form anchoring fibrils that connect type IV collagen in the basal lamina to plaques in the underlying connective tissue. It binds laminin.
[ "PMID:19693541" ]
null
[]
[]
[]
[]
[]
[ "GO:0140158", "GO:0140392" ]
[ "part_of GO:0098648" ]
[ "part_of" ]
[ "GO:0098648" ]
[ "GO:0098648", "GO:0140158", "GO:0140392" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0005591
5,591
collagen type VIII trimer
cellular_component
A collagen heterotrimer containing type VIII alpha chains; [alpha1(VIII)2]alpha2(VIII) and alpha1(VIII)[alpha2(VIII)]2 trimers have been observed; type VIII collagen triple helices associate to form regular hexagonal nets.
[ "PMID:21421911" ]
null
[]
[]
[]
[]
[]
[ "GO:0098642" ]
[ "part_of GO:0098646" ]
[ "part_of" ]
[ "GO:0098646" ]
[ "GO:0098642", "GO:0098646" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30148\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31070\" xsd:anyURI" ]
null
null
false
true
4
GO:0005592
5,592
collagen type XI trimer
cellular_component
A collagen heterotrimer containing type XI and type II alpha chains in alpha1(XI) alpha2(XI) alpha1(II) trimers; type XI collagen triple helices associate to form fibrils.
[ "PMID:7642541" ]
null
[]
[]
[]
[]
[]
[ "GO:0005583" ]
[]
[]
[]
[ "GO:0005583" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30122\" xsd:anyURI" ]
null
null
false
true
3
GO:0005593
5,593
FACIT collagen trimer
cellular_component
A collagen trimer that associates with collagen fibrils and consists of collagen monomers that contain two or more relatively short triple-helical domains connected by non-triple-helical sequences.
[ "PMID:21421911" ]
The acronym FACIT stands for fibril-associated collagen with interrupted triple helix.
[]
[]
[]
[]
[ "Wikipedia:FACIT_collagen" ]
[ "GO:0005581", "GO:0140392" ]
[ "part_of GO:0140153" ]
[ "part_of" ]
[ "GO:0140153" ]
[ "GO:0005581", "GO:0140153", "GO:0140392" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0005594
5,594
collagen type IX trimer
cellular_component
A collagen heterotrimer containing type IX alpha chains in alpha1(IX)alpha2(IX)alpha3(IX) trimers; type IX collagen triple helices associate to form a structure that links glycosaminoglycans to type II collagen fibrils.
[ "PMID:21421911" ]
null
[]
[]
[]
[]
[]
[ "GO:0005593" ]
[]
[]
[]
[ "GO:0005593" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0005595
5,595
collagen type XII trimer
cellular_component
A collagen homotrimer of alpha1(XII) chains; type XII collagen triple helices may link sheet-forming or fibrillar collagens to other structures.
[ "PMID:21421911" ]
null
[]
[]
[]
[]
[]
[ "GO:0005593" ]
[]
[]
[]
[ "GO:0005593" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0005596
5,596
collagen type XIV trimer
cellular_component
A collagen homotrimer of alpha1(XIV) chains; type XIV collagen triple helices may link sheet-forming or fibrillar collagens to other structures.
[ "PMID:21421911" ]
null
[]
[]
[]
[]
[]
[ "GO:0005593" ]
[]
[]
[]
[ "GO:0005593" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0005597
5,597
collagen type XVI trimer
cellular_component
A collagen trimer containing alpha(XVI) chains; type XVI trimers can associate with microfibrils.
[ "PMID:12782140" ]
null
[]
[]
[]
[]
[]
[ "GO:0005593" ]
[]
[]
[]
[ "GO:0005593" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0005598
5,598
obsolete short-chain collagen trimer
cellular_component
OBSOLETE. Any collagen trimer that does not form fibrils and that is relatively short compared to the collagen trimers that do form fibrils.
[ "ISBN:0198599587" ]
This term was obsoleted because it was an unnecessary grouping term.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005591", "GO:0005599" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29485\" xsd:anyURI" ]
null
null
true
true
1
GO:0005599
5,599
collagen type X trimer
cellular_component
A collagen homotrimer of alpha1(X) chains; type X collagen triple helices form hexagonal networks (sheets).
[ "PMID:21421911" ]
Collagen X trimers have been observed to form hexagonal lattices in vitro, but in vivo they have been found in a fibril associated form (PMID:19693541).
[]
[]
[]
[]
[]
[ "GO:0098642" ]
[ "part_of GO:0098646" ]
[ "part_of" ]
[ "GO:0098646" ]
[ "GO:0098642", "GO:0098646" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29415\" xsd:anyURI" ]
null
null
false
true
8
GO:0005601
5,601
classical-complement-pathway C3/C5 convertase complex
cellular_component
A heterodimeric protein complex that catalyzes the cleavage of complement components C3 and C5, and acts in the classical pathway of complement activation; consists of one monomer of C2a and one monomer of C4b; C2a is the catalytic subunit, but cannot catalyze cleavage alone.
[ "GOC:mah" ]
null
[]
[]
[]
[]
[]
[ "GO:0140392", "GO:1902494" ]
[]
[]
[]
[ "GO:0140392", "GO:1902494" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1