Datasets:
LiteFold
/
GO

Dataset card Data Studio Files
xet
 Community
go_id
string
go_numeric_id
int64
name
string
namespace
string
definition
string
definition_xrefs
list
comment
string
synonyms
list
synonym_scopes
list
alt_ids
list
subsets
list
xrefs
list
is_a_ids
list
relationship_edges
list
relationship_types
list
relationship_target_ids
list
parent_ids
list
intersection_of
list
union_of
list
disjoint_from
list
replaced_by
list
consider
list
property_values
list
created_by
string
creation_date
string
is_obsolete
bool
in_go_basic
bool
split_bucket
int64
GO:0006102
6,102
isocitrate metabolic process
biological_process
The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle.
[ "ISBN:0198506732" ]
null
[ "isocitrate metabolism" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0072350", "GO:1902652" ]
[]
[]
[]
[ "GO:0072350", "GO:1902652" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006103
6,103
2-oxoglutarate metabolic process
biological_process
The chemical reactions and pathways involving oxoglutarate, the dianion of 2-oxoglutaric acid. It is a key constituent of the TCA cycle and a key intermediate in amino-acid metabolism.
[ "ISBN:0198506732" ]
null
[ "2-ketoglutarate metabolic process", "2-ketoglutarate metabolism", "2-oxoglutarate metabolism", "alpha-ketoglutarate metabolic process", "alpha-ketoglutarate metabolism", "alpha-oxoglutarate metabolic process", "alpha-oxoglutarate metabolism" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[ "Reactome:R-HSA-2978092 \"Abnormal conversion of 2-oxoglutarate to 2-hydroxyglutarate\"", "Reactome:R-HSA-880009 \"Interconversion of 2-oxoglutarate and 2-hydroxyglutarate\"" ]
[ "GO:0043648" ]
[]
[]
[]
[ "GO:0043648" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006104
6,104
succinyl-CoA metabolic process
biological_process
The chemical reactions and pathways involving succinyl-CoA, a compound composed of the monovalent acyl group 3-carboxypropanoyl, derived from succinic acid by loss of one OH group, linked to coenzyme A.
[ "GOC:ai" ]
null
[ "succinyl-CoA metabolism" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0006637" ]
[]
[]
[]
[ "GO:0006637" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006105
6,105
succinate metabolic process
biological_process
The chemical reactions and pathways involving succinate, also known as butanedioate or ethane dicarboxylate, the dianion of succinic acid. Succinate is an important intermediate in metabolism and a component of the TCA cycle.
[ "ISBN:0198506732" ]
null
[ "succinate metabolism" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0043648" ]
[]
[]
[]
[ "GO:0043648" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006106
6,106
fumarate metabolic process
biological_process
The chemical reactions and pathways involving fumarate, the anion of trans-1,2-ethenedicarboxylic acid, the diastereoisomer of maleate. It is a key intermediate in metabolism and is formed in the TCA cycle from succinate and converted into malate.
[ "ISBN:0198506732" ]
null
[ "fumarate metabolism" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0043648" ]
[]
[]
[]
[ "GO:0043648" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006107
6,107
oxaloacetate metabolic process
biological_process
The chemical reactions and pathways involving oxaloacetate, the anion of oxobutanedioic acid, an important intermediate in metabolism, especially as a component of the TCA cycle.
[ "ISBN:0198506732" ]
null
[ "oxaloacetate metabolism" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0043648" ]
[]
[]
[]
[ "GO:0043648" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006108
6,108
malate metabolic process
biological_process
The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
[ "ISBN:0198506732" ]
null
[ "malate metabolism" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0043648" ]
[]
[]
[]
[ "GO:0043648" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006110
6,110
regulation of glycolytic process
biological_process
Any process that modulates the frequency, rate or extent of glycolysis.
[ "GOC:curators" ]
null
[ "regulation of glycolysis involved in cellular glucose homeostasis" ]
[ "EXACT" ]
[ "GO:0090525" ]
[]
[ "Reactome:R-HSA-170822 \"Regulation of Glucokinase by Glucokinase Regulatory Protein\"" ]
[ "GO:0033121", "GO:0043467", "GO:0043470", "GO:1903578" ]
[ "regulates GO:0006096" ]
[ "regulates" ]
[ "GO:0006096" ]
[ "GO:0006096", "GO:0033121", "GO:0043467", "GO:0043470", "GO:1903578" ]
[ "GO:0065007", "regulates GO:0006096" ]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006111
6,111
regulation of gluconeogenesis
biological_process
Any process that modulates the frequency, rate or extent of gluconeogenesis, the formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
[ "GOC:curators" ]
null
[ "regulation of gluconeogenesis involved in cellular glucose homeostasis", "regulation of glucose biosynthesis", "regulation of glucose biosynthetic process" ]
[ "RELATED", "BROAD", "BROAD" ]
[ "GO:0090526" ]
[]
[]
[ "GO:0010906", "GO:0043255" ]
[ "regulates GO:0006094" ]
[ "regulates" ]
[ "GO:0006094" ]
[ "GO:0006094", "GO:0010906", "GO:0043255" ]
[ "GO:0065007", "regulates GO:0006094" ]
[]
[]
[]
[]
[]
tb
2013-01-18T12:47:43Z
false
true
6
GO:0006113
6,113
fermentation
biological_process
The metabolic process that uses oxidation-reduction reactions of organic compounds and substrate-level phosphorylation for the generation of adenosine triphosphate (ATP), without consuming oxygen and is independent of electron transport chains.
[ "PMID:25617754", "PMID:38821505" ]
PMID:38821505 mentions exceptions regarding organic compounds and electron transport chain. Fermentation sub-processes exclude glycolysis to prevent redundancy with the glycolytic pathway.
[]
[]
[]
[ "gocheck_do_not_annotate", "goslim_pir" ]
[ "MetaCyc:Fermentation", "Wikipedia:Fermentation_(biochemistry)" ]
[ "GO:0015980" ]
[]
[]
[]
[ "GO:0015980" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28523\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29511\" xsd:anyURI" ]
null
null
false
true
7
GO:0006114
6,114
glycerol biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
[ "GOC:ai", "ISBN:0198506732" ]
null
[ "glycerol anabolism", "glycerol biosynthesis", "glycerol formation", "glycerol synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006071", "GO:0019401" ]
[]
[]
[]
[ "GO:0006071", "GO:0019401" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006115
6,115
ethanol biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of ethanol, CH3-CH2-OH, a colorless, water-miscible, flammable liquid produced by alcoholic fermentation.
[ "GOC:ai", "ISBN:0198506732" ]
null
[ "ethanol anabolism", "ethanol biosynthesis", "ethanol formation", "ethanol synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006067", "GO:0034309" ]
[]
[]
[]
[ "GO:0006067", "GO:0034309" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006116
6,116
obsolete NADH oxidation
biological_process
OBSOLETE. A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADH, to the oxidized form, NAD+.
[ "GOC:ai" ]
This term was obsoleted because it represents a reactant in oxidoreductase reactions.
[ "NAD (reduced) dehydrogenation", "NAD (reduced) oxidation", "NADH dehydrogenation", "reduced NAD dehydrogenation", "reduced NAD oxidation", "reduced nicotinamide adenine dinucleotide dehydrogenation", "reduced nicotinamide adenine dinucleotide oxidation" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/21577\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29050\" xsd:anyURI" ]
null
null
true
true
4
GO:0006117
6,117
acetaldehyde metabolic process
biological_process
The chemical reactions and pathways involving acetaldehyde, a colorless, flammable liquid intermediate in the metabolism of alcohol.
[ "GOC:curators" ]
null
[ "acetaldehyde metabolism", "ethanal metabolic process", "ethanal metabolism" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006081" ]
[]
[]
[]
[ "GO:0006081" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006118
6,118
obsolete electron transport
biological_process
OBSOLETE. The transport of electrons from an electron donor to an electron acceptor.
[ "GOC:curators" ]
This term was made obsolete because it describes a molecular function.
[ "6-phosphofructokinase reduction", "dihydrobiopterin reduction", "dihydrolipoamide reduction", "dihydrolipoylprotein reduction", "dihydropteridine reduction", "electron transfer", "electron transport", "other pathways of electron transport", "oxidized glutathione reduction", "protein-disulfide red...
[ "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "EXACT", "EXACT", "RELATED", "RELATED", "RELATED" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0016491", "GO:0022904" ]
[]
null
null
true
true
2
GO:0006119
6,119
oxidative phosphorylation
biological_process
The phosphorylation of ADP to ATP that accompanies the oxidation of a metabolite through the operation of the respiratory chain. Oxidation of compounds establishes a proton gradient across the membrane, providing the energy for ATP synthesis.
[ "ISBN:0198506732", "ISBN:0471331309" ]
null
[ "respiratory-chain phosphorylation" ]
[ "EXACT" ]
[]
[ "goslim_pir" ]
[ "Wikipedia:Oxidative_phosphorylation" ]
[ "GO:0009060" ]
[ "has_part GO:0015986" ]
[ "has_part" ]
[ "GO:0015986" ]
[ "GO:0009060", "GO:0015986" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006120
6,120
mitochondrial electron transport, NADH to ubiquinone
biological_process
The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation.
[ "ISBN:0716731363" ]
null
[ "complex I (NADH to ubiquinone)", "oxidative phosphorylation, NADH to ubiquinone" ]
[ "RELATED", "EXACT" ]
[]
[]
[]
[ "GO:0019646" ]
[ "part_of GO:0042775" ]
[ "part_of" ]
[ "GO:0042775" ]
[ "GO:0019646", "GO:0042775" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006121
6,121
mitochondrial electron transport, succinate to ubiquinone
biological_process
The transfer of electrons from succinate to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex II.
[ "ISBN:0716731363" ]
null
[ "complex II (succinate to ubiquinone)", "mitochondrial electron transport, succinate to coenzyme Q", "oxidative phosphorylation, succinate to ubiquinone" ]
[ "RELATED", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0019646" ]
[ "part_of GO:0042775" ]
[ "part_of" ]
[ "GO:0042775" ]
[ "GO:0019646", "GO:0042775" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006122
6,122
mitochondrial electron transport, ubiquinol to cytochrome c
biological_process
The transfer of electrons from ubiquinol to cytochrome c that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex III.
[ "ISBN:0716731363" ]
null
[ "complex III (ubiquinone to cytochrome c)" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0019646" ]
[ "part_of GO:0042775" ]
[ "part_of" ]
[ "GO:0042775" ]
[ "GO:0019646", "GO:0042775" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0006123
6,123
mitochondrial electron transport, cytochrome c to oxygen
biological_process
The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.
[ "ISBN:0716731363" ]
null
[ "complex IV (reduction of O2)" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0019646" ]
[ "part_of GO:0042775" ]
[ "part_of" ]
[ "GO:0042775" ]
[ "GO:0019646", "GO:0042775" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006124
6,124
ferredoxin metabolic process
biological_process
The chemical reactions and pathways involving ferredoxin, any simple, nonenzymatic iron-sulfur protein that is characterized by having equal numbers of atoms of iron and labile sulfur. Iron and sulfur atoms are present in one or two clusters of two or four atoms of each.
[ "ISBN:0198506732" ]
null
[ "ferredoxin metabolism" ]
[ "EXACT" ]
[]
[]
[ "Reactome:R-HSA-2395516 \"Electron transport from NADPH to Ferredoxin\"" ]
[ "GO:0019538" ]
[]
[]
[]
[ "GO:0019538" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006125
6,125
obsolete thioredoxin pathway
biological_process
OBSOLETE. This term was not defined before being made obsolete.
[ "GOC:mtg_electron_transport" ]
This term was made obsolete because it is not clear what it is intended to represent.
[ "thioredoxin pathway", "thioredoxin reduction" ]
[ "EXACT", "NARROW" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0045454" ]
[]
null
null
true
true
6
GO:0006126
6,126
obsolete other pathways of electron transport
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:curators" ]
This term was made obsolete because it was an unnecessary grouping term.
[ "other pathways of electron transport" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0022900" ]
[]
[]
null
null
true
true
7
GO:0006127
6,127
glycerol-3-phosphate shuttle
biological_process
The process of transferring reducing equivalents from NADH in the cytosol into the mitochondria via glycerol-3-phosphate. Cytosolic glycerol-3-phosphate dehydrogenase uses NADH to convert dihydroxyacetone phosphate (DHAP) to glycerol-3-phosphate (G3P) in the cytosol; G3P then diffuses into the mitochondria where mitoch...
[ "GOC:sjm", "PMID:16368075" ]
null
[ "glycerol phosphate shuttle", "glycerophosphate shuttle" ]
[ "EXACT", "EXACT" ]
[]
[]
[ "MetaCyc:PWY-6118" ]
[ "GO:0019674" ]
[ "has_part GO:0004368", "has_part GO:0141152" ]
[ "has_part", "has_part" ]
[ "GO:0004368", "GO:0141152" ]
[ "GO:0004368", "GO:0019674", "GO:0141152" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/26974\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28982\" xsd:anyURI" ]
null
null
false
true
1
GO:0006129
6,129
obsolete protein-disulfide reduction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function rather than a biological process.
[ "protein-disulfide reduction", "protein-disulphide reduction" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0019153", "GO:0022900" ]
[]
null
null
true
true
9
GO:0006130
6,130
obsolete 6-phosphofructokinase reduction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because the term string was ambiguous and the term may represent a molecular function.
[ "6-phosphofructokinase reduction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003872", "GO:0022900" ]
[]
null
null
true
true
2
GO:0006131
6,131
obsolete dihydrolipoamide reduction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function rather than a biological process.
[ "dihydrolipoamide reduction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0004148", "GO:0022900", "GO:0051068" ]
[]
null
null
true
true
8
GO:0006132
6,132
obsolete dihydrolipoylprotein reduction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function rather than a biological process.
[ "dihydrolipoylprotein reduction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0004148", "GO:0022900" ]
[]
null
null
true
true
3
GO:0006134
6,134
obsolete dihydrobiopterin reduction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function rather than a biological process.
[ "dihydrobiopterin reduction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0022900", "GO:0047040", "GO:0051066" ]
[]
null
null
true
true
6
GO:0006135
6,135
obsolete dihydropteridine reduction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function rather than a biological process.
[ "dihydropteridine reduction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0004155", "GO:0022900", "GO:0051067" ]
[]
null
null
true
true
9
GO:0006139
6,139
nucleobase-containing compound metabolic process
biological_process
Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
[ "GOC:ai" ]
null
[ "cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolic process", "cellular nucleobase, nucleoside, nucleotide and nucleic acid metabolism", "nucleobase, nucleoside and nucleotide metabolic process", "nucleobase, nucleoside, nucleotide and nucleic acid metabolic process", "nucleobase, nucleo...
[ "EXACT", "EXACT", "RELATED", "RELATED", "EXACT" ]
[ "GO:0055134" ]
[ "gocheck_do_not_annotate", "goslim_pir", "goslim_plant" ]
[]
[ "GO:0044238" ]
[]
[]
[]
[ "GO:0044238" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31498\" xsd:anyURI" ]
null
null
false
true
4
GO:0006140
6,140
regulation of nucleotide metabolic process
biological_process
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleotides.
[ "GOC:curators" ]
null
[ "regulation of nucleotide metabolism" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0019219", "GO:0051174", "GO:0062012" ]
[ "regulates GO:0009117" ]
[ "regulates" ]
[ "GO:0009117" ]
[ "GO:0009117", "GO:0019219", "GO:0051174", "GO:0062012" ]
[ "GO:0065007", "regulates GO:0009117" ]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006142
6,142
obsolete regulation of pyrimidine nucleobase metabolic process
biological_process
OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving pyrimidine nucleobases.
[ "GOC:curators" ]
This term was obsoleted because it is an unnecessary grouping class.
[ "regulation of pyrimidine base metabolic process", "regulation of pyrimidine base metabolism" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30570\" xsd:anyURI" ]
null
null
true
true
2
GO:0006143
6,143
obsolete purine metabolic process
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:curators" ]
This term was made obsolete because more appropriate terms were created.
[ "purine metabolic process" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0006144", "GO:0006163", "GO:0042278" ]
[]
null
null
true
true
4
GO:0006144
6,144
purine nucleobase metabolic process
biological_process
The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.
[ "GOC:curators" ]
null
[ "purine base metabolic process", "purine base metabolism", "purine metabolic process", "purine metabolism" ]
[ "EXACT", "EXACT", "NARROW", "NARROW" ]
[]
[]
[]
[ "GO:0009112", "GO:0072521" ]
[]
[]
[]
[ "GO:0009112", "GO:0072521" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006145
6,145
purine nucleobase catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.
[ "GOC:curators" ]
null
[ "purine base breakdown", "purine base catabolic process", "purine base catabolism", "purine base degradation" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006144", "GO:0046113", "GO:0072523" ]
[]
[]
[]
[ "GO:0006144", "GO:0046113", "GO:0072523" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006146
6,146
adenine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of adenine, 6-aminopurine, one of the 5 main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine.
[ "ISBN:0198506732" ]
null
[ "adenine breakdown", "adenine catabolism", "adenine degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006145", "GO:0046083" ]
[]
[]
[]
[ "GO:0006145", "GO:0046083" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006147
6,147
guanine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of guanine, 2-amino-6-hydroxypurine, a purine that is one of the five main bases found in nucleic acids and a component of a number of phosphorylated guanosine derivatives whose metabolic or regulatory functions are important.
[ "GOC:curators" ]
null
[ "guanine breakdown", "guanine catabolism", "guanine degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006145", "GO:0046098" ]
[]
[]
[]
[ "GO:0006145", "GO:0046098" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006148
6,148
inosine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs.
[ "GOC:curators" ]
null
[ "inosine breakdown", "inosine catabolism", "inosine degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0046102", "GO:0046130" ]
[]
[]
[]
[ "GO:0046102", "GO:0046130" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006149
6,149
deoxyinosine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of deoxyinosine, hypoxanthine deoxyriboside.
[ "GOC:curators" ]
null
[ "deoxyinosine breakdown", "deoxyinosine catabolism", "deoxyinosine degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0046094", "GO:0046121", "GO:0046124" ]
[]
[]
[]
[ "GO:0046094", "GO:0046121", "GO:0046124" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006152
6,152
purine nucleoside catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).
[ "GOC:curators" ]
null
[ "purine nucleoside breakdown", "purine nucleoside catabolism", "purine nucleoside degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009164", "GO:0042278", "GO:0072523" ]
[]
[]
[]
[ "GO:0009164", "GO:0042278", "GO:0072523" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006154
6,154
adenosine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes.
[ "GOC:curators" ]
null
[ "adenosine breakdown", "adenosine catabolism", "adenosine degradation", "adenosine phosphorolysis" ]
[ "EXACT", "EXACT", "EXACT", "RELATED" ]
[ "GO:0006156" ]
[]
[ "MetaCyc:SALVADEHYPOX-PWY" ]
[ "GO:0046085", "GO:0046130" ]
[]
[]
[]
[ "GO:0046085", "GO:0046130" ]
[]
[]
[]
[]
[]
[ "skos:narrowMatch MetaCyc:SALVADEHYPOX-PWY", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28527\" xsd:anyURI" ]
null
null
false
true
3
GO:0006155
6,155
obsolete adenosine deaminase reaction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function.
[ "adenosine deaminase reaction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0004000" ]
[]
[]
null
null
true
true
9
GO:0006157
6,157
deoxyadenosine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of deoxyadenosine, 2-deoxyribosyladenine, one of the four major nucleosides of DNA.
[ "GOC:curators" ]
null
[ "deoxyadenosine breakdown", "deoxyadenosine catabolism", "deoxyadenosine degradation", "deoxyadenosine phosphorolysis" ]
[ "EXACT", "EXACT", "EXACT", "RELATED" ]
[ "GO:0006159" ]
[]
[]
[ "GO:0046090", "GO:0046121", "GO:0046124" ]
[]
[]
[]
[ "GO:0046090", "GO:0046121", "GO:0046124" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006158
6,158
obsolete deoxyadenosine deaminase reaction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function.
[ "deoxyadenosine deaminase reaction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0046936" ]
[]
[]
null
null
true
true
6
GO:0006161
6,161
deoxyguanosine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of deoxyguanosine, a nucleoside consisting of the base guanine and the sugar deoxyribose.
[ "GOC:jl" ]
null
[ "deoxyguanosine breakdown", "deoxyguanosine catabolism", "deoxyguanosine degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0046121", "GO:0046124" ]
[]
[]
[]
[ "GO:0046121", "GO:0046124" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006162
6,162
obsolete purine/pyrimidine nucleoside diphosphate reduction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function rather than a biological process.
[ "purine/pyrimidine nucleoside diphosphate reduction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0004748" ]
[]
null
null
true
true
2
GO:0006163
6,163
purine nucleotide metabolic process
biological_process
The chemical reactions and pathways involving a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
[ "GOC:curators", "ISBN:0198506732" ]
null
[ "purine metabolic process", "purine metabolism", "purine nucleotide metabolism" ]
[ "NARROW", "NARROW", "EXACT" ]
[]
[]
[]
[ "GO:0009117", "GO:0072521" ]
[]
[]
[]
[ "GO:0009117", "GO:0072521" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0006164
6,164
purine nucleotide biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
[ "GOC:curators", "ISBN:0198506732" ]
null
[ "purine nucleotide anabolism", "purine nucleotide biosynthesis", "purine nucleotide formation", "purine nucleotide synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006163", "GO:0009165", "GO:0072522" ]
[]
[]
[]
[ "GO:0006163", "GO:0009165", "GO:0072522" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31634\" xsd:anyURI" ]
null
null
false
true
9
GO:0006165
6,165
obsolete nucleoside diphosphate phosphorylation
biological_process
OBSOLETE. The process of introducing a phosphate group into a nucleoside diphosphate to produce a nucleoside triphosphate.
[ "GOC:ai" ]
The reason for obsoletion is that this term represents a single step MF.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
9
GO:0006166
6,166
purine ribonucleoside salvage
biological_process
Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis.
[ "GOC:jl" ]
null
[]
[]
[]
[]
[]
[ "GO:0043101", "GO:0043174", "GO:0046129" ]
[]
[]
[]
[ "GO:0043101", "GO:0043174", "GO:0046129" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006168
6,168
adenine salvage
biological_process
Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis.
[ "GOC:jl" ]
null
[ "adenine salvage pathway", "adenine, hypoxanthine and their nucleoside salvage" ]
[ "EXACT", "BROAD" ]
[]
[]
[ "MetaCyc:PWY-6610" ]
[ "GO:0043096", "GO:0046084" ]
[]
[]
[]
[ "GO:0043096", "GO:0046084" ]
[]
[]
[]
[]
[]
[ "skos:broadMatch MetaCyc:P121-PWY", "skos:broadMatch MetaCyc:PWY-6605", "skos:broadMatch MetaCyc:PWY-6609", "skos:broadMatch MetaCyc:PWY-6611", "skos:broadMatch MetaCyc:PWY-6619", "skos:exactMatch MetaCyc:PWY-6610", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31634\" xsd:anyU...
null
null
false
true
3
GO:0006169
6,169
adenosine salvage
biological_process
Any process that generates adenosine, adenine riboside, from derivatives of it without de novo synthesis.
[ "GOC:jl" ]
null
[ "adenine, hypoxanthine and their nucleoside salvage" ]
[ "BROAD" ]
[]
[]
[]
[ "GO:0006166", "GO:0046086" ]
[]
[]
[]
[ "GO:0006166", "GO:0046086" ]
[]
[]
[]
[]
[]
[ "skos:broadMatch MetaCyc:P121-PWY", "skos:broadMatch MetaCyc:PWY-6605", "skos:broadMatch MetaCyc:PWY-6609", "skos:broadMatch MetaCyc:PWY-6611", "skos:broadMatch MetaCyc:PWY-6619", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31634\" xsd:anyURI" ]
null
null
false
true
3
GO:0006170
6,170
dAMP biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of dAMP, deoxyadenosine monophosphate (2'-deoxyadenosine 5'-phosphate).
[ "ISBN:0198506732" ]
null
[ "dAMP anabolism", "dAMP biosynthesis", "dAMP formation", "dAMP synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009153", "GO:0009171", "GO:0046053" ]
[]
[]
[]
[ "GO:0009153", "GO:0009171", "GO:0046053" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006172
6,172
ADP biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of ADP, adenosine 5'-diphosphate.
[ "GOC:ai" ]
null
[ "ADP anabolism", "ADP biosynthesis", "ADP formation", "ADP synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009152", "GO:0009180", "GO:0046031" ]
[]
[]
[]
[ "GO:0009152", "GO:0009180", "GO:0046031" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0006173
6,173
dADP biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of dADP, deoxyadenosine diphosphate (2'-deoxyadenosine 5'-diphosphate).
[ "ISBN:0198506732" ]
null
[ "dADP anabolism", "dADP biosynthesis", "dADP formation", "dADP synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009153", "GO:0009183", "GO:0046056" ]
[]
[]
[]
[ "GO:0009153", "GO:0009183", "GO:0046056" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006174
6,174
obsolete dADP phosphorylation
biological_process
OBSOLETE. The process of introducing a phosphate group into dADP, deoxyadenosine diphosphate, to produce dATP.
[ "ISBN:0198506732" ]
The reason for obsoletion is that this term represents a single step MF.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
8
GO:0006175
6,175
dATP biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of dATP, deoxyadenosine triphosphate (2'-deoxyadenosine 5'-triphosphate).
[ "ISBN:0198506732" ]
null
[ "dATP anabolism", "dATP biosynthesis", "dATP formation", "dATP synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009153", "GO:0009216", "GO:0046060" ]
[]
[]
[]
[ "GO:0009153", "GO:0009216", "GO:0046060" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006176
6,176
dATP biosynthetic process from ADP
biological_process
The chemical reactions and pathways resulting in the formation of dATP, deoxyadenosine triphosphate (2'-deoxyadenosine 5'-triphosphate) from other compounds, including ADP, adenosine diphosphate.
[ "ISBN:0198506732" ]
null
[ "dATP anabolism from ADP", "dATP formation from ADP", "dATP synthesis from ADP" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006175", "GO:0046031" ]
[]
[]
[]
[ "GO:0006175", "GO:0046031" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006177
6,177
GMP biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of GMP, guanosine monophosphate.
[ "ISBN:0198506732" ]
null
[ "GMP anabolism", "GMP biosynthesis", "GMP formation", "GMP synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009152", "GO:0009168", "GO:0046037" ]
[]
[]
[]
[ "GO:0009152", "GO:0009168", "GO:0046037" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006178
6,178
guanine salvage
biological_process
Any process that generates guanine, 2-amino-6-hydroxypurine, from derivatives of it without de novo synthesis.
[ "GOC:jl" ]
null
[ "guanine, xanthine and their nucleoside salvage" ]
[ "BROAD" ]
[]
[]
[]
[ "GO:0043096", "GO:0046099" ]
[]
[]
[]
[ "GO:0043096", "GO:0046099" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006180
6,180
deoxyguanosine salvage
biological_process
Any process that generates deoxyguanosine from derivatives of it, without de novo synthesis.
[ "GOC:jl" ]
null
[]
[]
[]
[]
[]
[ "GO:0042452", "GO:0043098" ]
[]
[]
[]
[ "GO:0042452", "GO:0043098" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0006182
6,182
cGMP biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate.
[ "ISBN:0198506732" ]
null
[ "cGMP anabolism", "cGMP biosynthesis", "cGMP formation", "cGMP synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009152", "GO:0009190", "GO:0046068" ]
[]
[]
[]
[ "GO:0009152", "GO:0009190", "GO:0046068" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006183
6,183
GTP biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate.
[ "ISBN:0198506732" ]
null
[ "GTP anabolism", "GTP biosynthesis", "GTP formation", "GTP synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009152", "GO:0009206", "GO:0046039" ]
[]
[]
[]
[ "GO:0009152", "GO:0009206", "GO:0046039" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006185
6,185
dGDP biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of dGDP, deoxyguanosine diphosphate, (2'-deoxyguanosine 5'-diphosphate).
[ "ISBN:0198506732" ]
null
[ "dGDP anabolism", "dGDP biosynthesis", "dGDP formation", "dGDP synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009153", "GO:0009183", "GO:0046066" ]
[]
[]
[]
[ "GO:0009153", "GO:0009183", "GO:0046066" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006186
6,186
obsolete dGDP phosphorylation
biological_process
OBSOLETE. The process of introducing a phosphate group into dGDP, deoxyguanosine diphosphate, to produce dGTP.
[ "ISBN:0198506732" ]
The reason for obsoletion is that this term represents a single step MF.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
9
GO:0006187
6,187
dGTP biosynthetic process from dGDP
biological_process
The chemical reactions and pathways resulting in the formation of dGTP, deoxyguanosine triphosphate (2'-deoxyguanosine 5'-triphosphate) from other compounds, including gGDP, deoxyguanosine diphosphate.
[ "ISBN:0198506732" ]
null
[ "dGTP anabolism from dGDP", "dGTP formation from dGDP", "dGTP synthesis from dGDP" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0046066", "GO:0046071" ]
[]
[]
[]
[ "GO:0046066", "GO:0046071" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0006188
6,188
IMP biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate.
[ "ISBN:0198506732" ]
null
[ "IMP anabolism", "IMP biosynthesis", "IMP formation", "IMP synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009152", "GO:0009168", "GO:0046040" ]
[]
[]
[]
[ "GO:0009152", "GO:0009168", "GO:0046040" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006189
6,189
'de novo' IMP biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
[ "GOC:mah", "ISBN:0716720094" ]
null
[ "'de novo' IMP anabolism", "'de novo' IMP biosynthesis", "'de novo' IMP formation", "'de novo' IMP synthesis", "'de novo' purine biosynthesis", "'de novo' purine biosynthetic process" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "BROAD", "BROAD" ]
[]
[]
[]
[ "GO:0006188" ]
[]
[]
[]
[ "GO:0006188" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006190
6,190
inosine salvage
biological_process
Any process that generates inosine, hypoxanthine riboside, from derivatives of it without de novo synthesis.
[ "GOC:jl" ]
null
[ "adenine, hypoxanthine and their nucleoside salvage", "guanine, xanthine and their nucleoside salvage" ]
[ "RELATED", "RELATED" ]
[]
[]
[]
[ "GO:0006166", "GO:0046103" ]
[]
[]
[]
[ "GO:0006166", "GO:0046103" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006191
6,191
deoxyinosine salvage
biological_process
Any process that generates deoxyinosine from derivatives of it, without de novo synthesis.
[ "GOC:jl" ]
null
[]
[]
[]
[]
[]
[ "GO:0043098", "GO:0046095" ]
[]
[]
[]
[ "GO:0043098", "GO:0046095" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006192
6,192
obsolete IDP phosphorylation
biological_process
OBSOLETE. The process of introducing a phosphate group into IDP, inosine (5'-)diphosphate, to produce ITP.
[ "GOC:ai" ]
The reason for obsoletion is that this term represents a single step MF.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
6
GO:0006193
6,193
ITP catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of ITP, inosine (5'-)triphosphate.
[ "ISBN:0198506732" ]
null
[ "ITP breakdown", "ITP catabolism", "ITP degradation", "ITP hydrolysis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009154", "GO:0009207", "GO:0046041" ]
[]
[]
[]
[ "GO:0009154", "GO:0009207", "GO:0046041" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0006194
6,194
obsolete dIDP phosphorylation
biological_process
OBSOLETE. The process of introducing a phosphate group into dIDP, deoxyinosine diphosphate, to produce dITP.
[ "ISBN:0198506732" ]
The reason for obsoletion is that this term represents a single step MF.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
6
GO:0006195
6,195
purine nucleotide catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
[ "GOC:curators", "ISBN:0198506732" ]
null
[ "purine nucleotide breakdown", "purine nucleotide catabolism", "purine nucleotide degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[ "Reactome:R-HSA-74259 \"Purine catabolism\"" ]
[ "GO:0006163", "GO:0009166", "GO:0072523" ]
[]
[]
[]
[ "GO:0006163", "GO:0009166", "GO:0072523" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006196
6,196
AMP catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of AMP, adenosine monophosphate.
[ "ISBN:0198506732" ]
null
[ "AMP breakdown", "AMP catabolism", "AMP degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009154", "GO:0009169", "GO:0046033" ]
[]
[]
[]
[ "GO:0009154", "GO:0009169", "GO:0046033" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0006197
6,197
obsolete adenylate deaminase reaction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function.
[ "adenylate deaminase reaction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003876" ]
[]
[]
null
null
true
true
1
GO:0006198
6,198
cAMP catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate).
[ "ISBN:0198506732" ]
null
[ "3',5' cAMP catabolic process", "3',5' cAMP catabolism", "3',5'-cAMP catabolic process", "3',5'-cAMP catabolism", "adenosine 3',5'-cyclophosphate catabolic process", "adenosine 3',5'-cyclophosphate catabolism", "cAMP breakdown", "cAMP catabolism", "cAMP degradation", "cyclic AMP catabolic process"...
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009154", "GO:0009214", "GO:0046058" ]
[]
[]
[]
[ "GO:0009154", "GO:0009214", "GO:0046058" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006200
6,200
obsolete ATP catabolic process
biological_process
OBSOLETE. The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
[ "GOC:ai" ]
The reason for making this term obsolete is that it gets misused in cases where phosphates are simply being removed from a small molecule. We found no cases where these molecules genuinely underwent catabolism.
[ "ATP breakdown", "ATP catabolism", "ATP degradation", "ATP hydrolysis" ]
[ "EXACT", "EXACT", "EXACT", "NARROW" ]
[]
[]
[ "Wikipedia:ATP_hydrolysis" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0016887" ]
[]
null
null
true
true
9
GO:0006201
6,201
GMP catabolic process to IMP
biological_process
The chemical reactions and pathways resulting in the breakdown of guanosine monophosphate into other compounds, including inosine monophosphate.
[ "ISBN:0198506732" ]
null
[ "GMP breakdown to IMP", "GMP degradation to IMP" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0046038", "GO:0046040" ]
[]
[]
[]
[ "GO:0046038", "GO:0046040" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006202
6,202
GMP catabolic process to guanine
biological_process
The chemical reactions and pathways resulting in the breakdown of guanosine monophosphate into other compounds, including guanine.
[ "ISBN:0198506732" ]
null
[ "GMP breakdown to guanine", "GMP degradation to guanine" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0046038", "GO:0046098" ]
[]
[]
[]
[ "GO:0046038", "GO:0046098" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006203
6,203
dGTP catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of dGTP, guanosine triphosphate.
[ "ISBN:0198506732" ]
null
[ "dGTP breakdown", "dGTP catabolism", "dGTP degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009155", "GO:0009217", "GO:0046070" ]
[]
[]
[]
[ "GO:0009155", "GO:0009217", "GO:0046070" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006204
6,204
IMP catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of IMP, inosine monophosphate.
[ "ISBN:0198506732" ]
null
[ "IMP breakdown", "IMP catabolism", "IMP degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009154", "GO:0009169", "GO:0046040" ]
[]
[]
[]
[ "GO:0009154", "GO:0009169", "GO:0046040" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006205
6,205
obsolete pyrimidine metabolic process
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:curators" ]
This term was made obsolete because more appropriate terms were created.
[ "pyrimidine metabolic process" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0006206", "GO:0006213", "GO:0006220" ]
[]
null
null
true
true
5
GO:0006206
6,206
pyrimidine nucleobase metabolic process
biological_process
The chemical reactions and pathways involving pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
[ "GOC:curators" ]
null
[ "pyrimidine base metabolic process", "pyrimidine base metabolism", "pyrimidine metabolic process", "pyrimidine metabolism" ]
[ "EXACT", "EXACT", "RELATED", "RELATED" ]
[]
[]
[]
[ "GO:0009112", "GO:0072527" ]
[]
[]
[]
[ "GO:0009112", "GO:0072527" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006207
6,207
'de novo' pyrimidine nucleobase biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
[ "GOC:mah", "ISBN:0716720094" ]
null
[ "'de novo' pyrimidine base anabolism", "'de novo' pyrimidine base biosynthesis", "'de novo' pyrimidine base biosynthetic process", "'de novo' pyrimidine base formation", "'de novo' pyrimidine base synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0019856" ]
[]
[]
[]
[ "GO:0019856" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006208
6,208
pyrimidine nucleobase catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
[ "GOC:curators" ]
null
[ "pyrimidine base breakdown", "pyrimidine base catabolic process", "pyrimidine base catabolism", "pyrimidine base degradation" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006206", "GO:0046113", "GO:0072529" ]
[]
[]
[]
[ "GO:0006206", "GO:0046113", "GO:0072529" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0006209
6,209
cytosine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of cytosine, 4-amino-2-hydroxypyrimidine, a pyrimidine derivative that is one of the five main bases found in nucleic acids; it occurs widely in cytidine derivatives.
[ "GOC:curators" ]
null
[ "cytosine breakdown", "cytosine catabolism", "cytosine degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006208", "GO:0019858" ]
[]
[]
[]
[ "GO:0006208", "GO:0019858" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0006210
6,210
thymine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base.
[ "GOC:curators" ]
null
[ "thymine breakdown", "thymine catabolism", "thymine degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006208", "GO:0019859" ]
[]
[]
[]
[ "GO:0006208", "GO:0019859" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006211
6,211
obsolete 5-methylcytosine catabolic process
biological_process
OBSOLETE. The chemical reactions and pathways resulting in the breakdown of 5-methylcytosine, a methylated base of DNA.
[ "GOC:curators" ]
This term was obsoleted because it it redundant with chromosomal 5-methylcytosine DNA demethylation pathway ; GO:0141166 or its children.
[ "5-methylcytosine breakdown", "5-methylcytosine catabolism", "5-methylcytosine degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0141166" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28732\" xsd:anyURI" ]
null
null
true
true
8
GO:0006212
6,212
uracil catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA.
[ "GOC:curators" ]
null
[ "uracil breakdown", "uracil catabolism", "uracil degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006208", "GO:0019860" ]
[]
[]
[]
[ "GO:0006208", "GO:0019860" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006213
6,213
pyrimidine nucleoside metabolic process
biological_process
The chemical reactions and pathways involving any pyrimidine nucleoside, one of a family of organic molecules consisting of a pyrimidine base covalently bonded to ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).
[ "GOC:jl", "ISBN:0140512713" ]
null
[ "pyrimidine metabolic process", "pyrimidine metabolism", "pyrimidine nucleoside metabolism" ]
[ "BROAD", "BROAD", "EXACT" ]
[]
[]
[]
[ "GO:0009116", "GO:0072527" ]
[]
[]
[]
[ "GO:0009116", "GO:0072527" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0006214
6,214
thymidine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA.
[ "GOC:curators" ]
null
[ "deoxyribosylthymine catabolic process", "deoxyribosylthymine catabolism", "thymidine breakdown", "thymidine catabolism", "thymidine degradation" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[ "GO:0006215" ]
[]
[]
[ "GO:0046104", "GO:0046127" ]
[]
[]
[]
[ "GO:0046104", "GO:0046127" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006216
6,216
cytidine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of cytidine, cytosine riboside, a widely distributed nucleoside.
[ "GOC:ai" ]
null
[ "cytidine breakdown", "cytidine catabolism", "cytidine degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0046087", "GO:0046133" ]
[]
[]
[]
[ "GO:0046087", "GO:0046133" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0006217
6,217
deoxycytidine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of deoxycytidine, 2-deoxyribosylcytosine, one of the four major nucleosides of DNA.
[ "GOC:curators" ]
null
[ "deoxycytidine breakdown", "deoxycytidine catabolism", "deoxycytidine degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0046092", "GO:0046127" ]
[]
[]
[]
[ "GO:0046092", "GO:0046127" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006218
6,218
uridine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of uridine, uracil riboside, a ribonucleoside very widely distributed but occurring almost entirely as phosphoric esters in ribonucleotides and ribonucleic acids.
[ "GOC:curators" ]
null
[ "uridine breakdown", "uridine catabolism", "uridine degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0046108", "GO:0046133" ]
[]
[]
[]
[ "GO:0046108", "GO:0046133" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0006219
6,219
deoxyuridine catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of deoxyuridine, 2-deoxyribosyluracil, one of the four major nucleosides of DNA.
[ "GOC:curators" ]
null
[ "deoxyuridine breakdown", "deoxyuridine catabolism", "deoxyuridine degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0046096", "GO:0046127" ]
[]
[]
[]
[ "GO:0046096", "GO:0046127" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006220
6,220
pyrimidine nucleotide metabolic process
biological_process
The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
[ "GOC:curators", "ISBN:0198506732" ]
null
[ "pyrimidine metabolic process", "pyrimidine metabolism", "pyrimidine nucleotide metabolism" ]
[ "BROAD", "BROAD", "EXACT" ]
[]
[]
[]
[ "GO:0009117", "GO:0072527" ]
[]
[]
[]
[ "GO:0009117", "GO:0072527" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0006221
6,221
pyrimidine nucleotide biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
[ "GOC:curators", "ISBN:0198506732" ]
null
[ "pyrimidine nucleotide anabolism", "pyrimidine nucleotide biosynthesis", "pyrimidine nucleotide formation", "pyrimidine nucleotide synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006220", "GO:0009165", "GO:0072528" ]
[]
[]
[]
[ "GO:0006220", "GO:0009165", "GO:0072528" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006222
6,222
UMP biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate.
[ "ISBN:0198506732" ]
null
[ "UMP anabolism", "UMP biosynthesis", "UMP formation", "UMP synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009174", "GO:0009220", "GO:0046049" ]
[]
[]
[]
[ "GO:0009174", "GO:0009220", "GO:0046049" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8