Datasets:
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GO

Dataset card Data Studio Files
xet
 Community
go_id
string
go_numeric_id
int64
name
string
namespace
string
definition
string
definition_xrefs
list
comment
string
synonyms
list
synonym_scopes
list
alt_ids
list
subsets
list
xrefs
list
is_a_ids
list
relationship_edges
list
relationship_types
list
relationship_target_ids
list
parent_ids
list
intersection_of
list
union_of
list
disjoint_from
list
replaced_by
list
consider
list
property_values
list
created_by
string
creation_date
string
is_obsolete
bool
in_go_basic
bool
split_bucket
int64
GO:0006728
6,728
pteridine biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of pteridine, pyrazino(2,3-dipyrimidine), the parent structure of pterins and the pteroyl group.
[ "ISBN:0198506732" ]
null
[ "pteridine anabolism", "pteridine biosynthesis", "pteridine formation", "pteridine synthesis", "pterin biosynthesis", "pterin biosynthetic process" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "NARROW", "NARROW" ]
[]
[]
[]
[ "GO:0019889", "GO:0042559", "GO:0046148" ]
[]
[]
[]
[ "GO:0019889", "GO:0042559", "GO:0046148" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006729
6,729
tetrahydrobiopterin biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of tetrahydrobiopterin, the reduced form of biopterin (2-amino-4-hydroxy-6-(1,2-dihydroxypropyl)-pteridine). It functions as a hydroxylation coenzyme, e.g. in the conversion of phenylalanine to tyrosine.
[ "ISBN:0198506732" ]
null
[ "5,6,7,8-tetrahydrobiopterin biosynthetic process", "tetrahydrobiopterin anabolism", "tetrahydrobiopterin biosynthesis", "tetrahydrobiopterin formation", "tetrahydrobiopterin synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0034312", "GO:0042559", "GO:0046146" ]
[]
[]
[]
[ "GO:0034312", "GO:0042559", "GO:0046146" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006730
6,730
one-carbon metabolic process
biological_process
The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
[ "GOC:hjd", "GOC:mah", "GOC:pde" ]
null
[ "one carbon metabolic process", "one carbon metabolism", "one-carbon metabolism", "one-carbon transfer metabolic process", "one-carbon transfer metabolism" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[ "GO:0019753", "GO:0019754" ]
[ "goslim_pir" ]
[ "UM-BBD_pathwayID:C1cyc" ]
[ "GO:0044281" ]
[]
[]
[]
[ "GO:0044281" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006731
6,731
obsolete coenzyme and prosthetic group metabolic process
biological_process
OBSOLETE. The chemical reactions and pathways involving coenzymes and prosthetic groups.
[ "GOC:ai" ]
This term was made obsolete because it was replaced by more specific terms.
[ "coenzyme and prosthetic group metabolic process" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0051189" ]
[]
null
null
true
true
9
GO:0006732
6,732
obsolete coenzyme metabolic process
biological_process
OBSOLETE. The chemical reactions and pathways involving coenzymes, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
[ "ISBN:0198506732" ]
1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all metabolically related...
[ "coenzyme and prosthetic group metabolic process", "coenzyme and prosthetic group metabolism", "coenzyme metabolism", "group transfer coenzyme metabolic process", "group transfer coenzyme metabolism" ]
[ "BROAD", "BROAD", "EXACT", "NARROW", "NARROW" ]
[ "GO:0006752" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
2
GO:0006733
6,733
obsolete oxidoreduction coenzyme metabolic process
biological_process
OBSOLETE. The chemical reactions and pathways involving coenzymes that are required, in addition to an enzyme and a substrate, for an oxidoreductase reaction to proceed.
[ "GOC:mah" ]
1. Making inferences in GO about compounds based on the coenzyme role curated by ChEBI creates relationships that are not always true which violates ontological principles for GO; therefore we will cease making these inferences. 2. It is not meaningful to group metabolic processes that are not all metabolically related...
[ "oxidoreduction coenzyme metabolism" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
6
GO:0006734
6,734
obsolete NADH metabolic process
biological_process
OBSOLETE. The chemical reactions and pathways involving reduced nicotinamide adenine dinucleotide (NADH), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid.
[ "GOC:jl", "ISBN:0618254153" ]
This term was obsoleted because it represents the same process as NAD+ metabolic process; GO:0019674.
[ "NAD (reduced) metabolic process", "NAD (reduced) metabolism", "NADH metabolism", "reduced NAD metabolic process", "reduced NAD metabolism", "reduced nicotinamide adenine dinucleotide metabolic process", "reduced nicotinamide adenine dinucleotide metabolism" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0019674" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29050\" xsd:anyURI" ]
null
null
true
true
1
GO:0006735
6,735
NADH regeneration
biological_process
A metabolic process that generates a pool of NADH by the reduction of NAD+.
[ "GOC:mah" ]
null
[ "NAD (reduced) regeneration", "reduced NAD regeneration", "reduced nicotinamide adenine dinucleotide regeneration" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0019674" ]
[]
[]
[]
[ "GO:0019674" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006738
6,738
nicotinamide riboside catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of nicotinamide riboside, the product of the formation of a glycosidic bond between ribose and nicotinamide.
[ "ISBN:0198506732" ]
null
[ "N-ribosylnicotinamide catabolic process", "nicotinamide riboside breakdown", "nicotinamide riboside catabolism", "nicotinamide riboside degradation" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0046495", "GO:0070638" ]
[]
[]
[]
[ "GO:0046495", "GO:0070638" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006740
6,740
NADPH regeneration
biological_process
A metabolic process that generates a pool of NADPH by the reduction of NADP+.
[ "GOC:mah" ]
null
[ "NADP (reduced) regeneration", "reduced NADP regeneration", "reduced nicotinamide adenine dinucleotide phosphate regeneration" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[ "Reactome:R-HSA-389542 \"NADPH regeneration\"" ]
[ "GO:0006091", "GO:0006739" ]
[]
[]
[]
[ "GO:0006091", "GO:0006739" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006741
6,741
NADP+ biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide phosphate (NADP+), a coenzyme that interconverts with its reduced form, NADPH, in many redox and biosynthetic reactions.
[ "GOC:mah" ]
null
[ "NADP (oxidized) biosynthesis", "NADP (oxidized) biosynthetic process", "NADP (reduced) biosynthesis", "NADP (reduced) biosynthetic process", "NADP anabolism", "NADP biosynthesis", "NADP biosynthetic process", "NADP formation", "NADP synthesis", "NADPH biosynthesis", "NADPH biosynthetic process"...
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006164", "GO:0006739", "GO:0019359" ]
[]
[]
[]
[ "GO:0006164", "GO:0006739", "GO:0019359" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29050\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29666\" xsd:anyURI" ]
null
null
false
true
4
GO:0006742
6,742
NADP+ catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of nicotinamide adenine dinucleotide phosphate (NADP+), a coenzyme that interconverts with its reduced form, NADPH, in many redox and biosynthetic reactions.
[ "GOC:mah" ]
null
[ "NADP (oxidized) catabolic process", "NADP (oxidized) catabolism", "NADP (reduced) catabolic process", "NADP (reduced) catabolism", "NADP breakdown", "NADP catabolic process", "NADP catabolism", "NADP degradation", "NADPH catabolic process", "NADPH catabolism", "nicotinamide adenine dinucleotide...
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006195", "GO:0006739", "GO:0019364" ]
[]
[]
[]
[ "GO:0006195", "GO:0006739", "GO:0019364" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29050\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29666\" xsd:anyURI" ]
null
null
false
true
6
GO:0006746
6,746
FADH2 metabolic process
biological_process
The chemical reactions and pathways involving the reduced form of flavin adenine dinucleotide.
[ "GOC:ai" ]
null
[ "FADH2 metabolism", "reduced flavin adenine dinucleotide metabolic process" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0072387" ]
[]
[]
[]
[ "GO:0072387" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006747
6,747
FAD biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of FAD, the oxidized form of flavin-adenine dinucleotide.
[ "GOC:ai", "PMID:20822113" ]
null
[ "FAD anabolism", "FAD biosynthesis", "FAD formation", "FAD synthesis", "oxidized flavin adenine dinucleotide biosynthesis", "oxidized flavin adenine dinucleotide biosynthetic process", "oxidized flavin-adenine dinucleotide biosynthesis", "oxidized flavin-adenine dinucleotide biosynthetic process" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0046443", "GO:0072388" ]
[]
[]
[]
[ "GO:0046443", "GO:0072388" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006749
6,749
glutathione metabolic process
biological_process
The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascor...
[ "ISBN:0198506732" ]
null
[ "glutathione metabolism", "oxidized glutathione reduction" ]
[ "EXACT", "NARROW" ]
[]
[]
[ "Reactome:R-HSA-174403 \"Glutathione synthesis and recycling\"" ]
[ "GO:0006575", "GO:0006790" ]
[]
[]
[]
[ "GO:0006575", "GO:0006790" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006750
6,750
glutathione biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins.
[ "GOC:ai", "GOC:al", "GOC:pde", "ISBN:0198506732" ]
null
[ "glutathione anabolism", "glutathione biosynthesis", "glutathione formation", "glutathione synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[ "MetaCyc:GLUTATHIONESYN-PWY" ]
[ "GO:0006749", "GO:0019184", "GO:0042398", "GO:0044272" ]
[]
[]
[]
[ "GO:0006749", "GO:0019184", "GO:0042398", "GO:0044272" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006751
6,751
glutathione catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins.
[ "GOC:ai", "ISBN:0198506732" ]
null
[ "glutathione breakdown", "glutathione catabolism", "glutathione degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006749", "GO:0042219", "GO:0044273" ]
[]
[]
[]
[ "GO:0006749", "GO:0042219", "GO:0044273" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0006753
6,753
nucleoside phosphate metabolic process
biological_process
The chemical reactions and pathways involving any phosphorylated nucleoside.
[ "GOC:mah" ]
null
[ "nucleoside phosphate metabolism" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0006796", "GO:0019637", "GO:0055086" ]
[]
[]
[]
[ "GO:0006796", "GO:0019637", "GO:0055086" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006755
6,755
obsolete carbamoyl phosphate-ADP transphosphorylation
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:mah" ]
This term was made obsolete because, according to PUMA2, this "pathway" is a single reaction, corresponding to 'carbamate kinase activity ; GO:0008804' (EC:2.7.2.2).
[ "carbamoyl phosphate-ADP transphosphorylation" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
6
GO:0006756
6,756
AMP phosphorylation
biological_process
The process of introducing a phosphate group into AMP, adenosine monophosphate, to produce ADP. Addition of two phosphate groups produces ATP.
[ "GOC:ai" ]
null
[]
[]
[]
[]
[]
[ "GO:0006754", "GO:0046033", "GO:0046940" ]
[]
[]
[]
[ "GO:0006754", "GO:0046033", "GO:0046940" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006757
6,757
obsolete ATP generation from ADP
biological_process
OBSOLETE. The process of introducing a phosphate group into ADP, adenosine diphosphate, to produce ATP.
[ "GOC:ai" ]
The reason for obsoletion is that this term represents a single step MF.
[ "ADP phosphorylation" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/21176\" xsd:anyURI" ]
null
null
true
true
6
GO:0006760
6,760
folic acid-containing compound metabolic process
biological_process
The chemical reactions and pathways involving a folic acid-containing compound, i.e. any of a group of heterocyclic compounds based on the pteroic acid skeleton conjugated with one or more L-glutamic acid or L-glutamate units.
[ "GOC:ai", "GOC:mah" ]
null
[ "folate and derivative metabolic process", "folate and derivative metabolism", "folate-containing compound metabolic process", "folate-containing compound metabolism", "folic acid and derivative metabolic process", "folic acid and derivative metabolism", "folic acid-containing compound metabolism", "v...
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006575", "GO:0042558" ]
[]
[]
[]
[ "GO:0006575", "GO:0042558" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006761
6,761
dihydrofolate biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of dihydrofolate, the dihydroxylated derivative of folate.
[ "GOC:ai" ]
null
[ "7,8-dihydrofolate biosynthesis", "7,8-dihydrofolate biosynthetic process", "dihydrofolate anabolism", "dihydrofolate biosynthesis", "dihydrofolate formation", "dihydrofolate synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009396", "GO:0043650", "GO:0046452" ]
[]
[]
[]
[ "GO:0009396", "GO:0043650", "GO:0046452" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006762
6,762
obsolete dihydrofolate reduction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function rather than a biological process.
[ "dihydrofolate reduction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0004146", "GO:0046452" ]
[]
null
null
true
true
3
GO:0006766
6,766
vitamin metabolic process
biological_process
The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serv...
[ "GOC:ai" ]
null
[ "vitamin metabolism" ]
[ "EXACT" ]
[]
[ "goslim_candida", "goslim_drosophila", "goslim_generic", "goslim_pir", "goslim_pombe", "goslim_yeast" ]
[ "Reactome:R-HSA-211916 \"Vitamins\"" ]
[ "GO:0044281" ]
[]
[]
[]
[ "GO:0044281" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006767
6,767
obsolete water-soluble vitamin metabolic process
biological_process
OBSOLETE. The chemical reactions and pathways involving any of a diverse group of vitamins that are soluble in water.
[ "GOC:jl" ]
This term was obsoleted because it is an unnecessary grouping class.
[ "water-soluble vitamin metabolism" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30524\" xsd:anyURI" ]
null
null
true
true
1
GO:0006768
6,768
biotin metabolic process
biological_process
The chemical reactions and pathways involving biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid; the (+) enantiomer is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions.
[ "ISBN:0198506732" ]
null
[ "biotin metabolism", "vitamin B7 metabolic process", "vitamin B7 metabolism", "vitamin H metabolic process", "vitamin H metabolism" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[ "Reactome:R-HSA-196780 \"Biotin transport and metabolism\"", "Wikipedia:Biotin" ]
[ "GO:0006790", "GO:0032787" ]
[]
[]
[]
[ "GO:0006790", "GO:0032787" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006769
6,769
nicotinamide metabolic process
biological_process
The chemical reactions and pathways involving nicotinamide, pyridine-3-carboxamide, the amide of nicotinic acid. It is a member of the B complex of vitamins and occurs widely in living organisms.
[ "ISBN:0198506732" ]
null
[ "niacin metabolic process", "niacin metabolism", "nicotinamide metabolism", "vitamin B3 metabolic process", "vitamin B3 metabolism" ]
[ "RELATED", "RELATED", "EXACT", "BROAD", "BROAD" ]
[]
[]
[ "MetaCyc:PWY-5083" ]
[ "GO:0009820", "GO:0072524" ]
[]
[]
[]
[ "GO:0009820", "GO:0072524" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006771
6,771
riboflavin metabolic process
biological_process
The chemical reactions and pathways involving riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD).
[ "GOC:jl", "PMID:11153262", "PMID:24764086" ]
null
[ "riboflavin metabolism", "vitamin B2 metabolic process", "vitamin B2 metabolism", "vitamin G metabolic process", "vitamin G metabolism" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[ "Reactome:R-HSA-196843 \"Vitamin B2 (riboflavin) metabolism\"", "Wikipedia:Riboflavin" ]
[ "GO:0042726" ]
[]
[]
[]
[ "GO:0042726" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006774
6,774
obsolete vitamin B12 reduction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function rather than a biological process.
[ "vitamin B12 reduction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0009235" ]
[]
null
null
true
true
3
GO:0006775
6,775
obsolete fat-soluble vitamin metabolic process
biological_process
OBSOLETE. The chemical reactions and pathways involving of any of a diverse group of vitamins that are soluble in organic solvents and relatively insoluble in water.
[ "GOC:jl", "ISBN:0198506732" ]
This term was obsoleted because it is an unnecessary grouping class.
[ "fat-soluble vitamin metabolism" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30524\" xsd:anyURI" ]
null
null
true
true
7
GO:0006776
6,776
vitamin A metabolic process
biological_process
The chemical reactions and pathways involving any of the vitamin A compounds, retinol, retinal (retinaldehyde) and retinoic acid, all of which are derivatives of beta-carotene.
[ "GOC:jl", "PMID:1503811" ]
null
[ "vitamin A metabolism" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0001523" ]
[]
[]
[]
[ "GO:0001523" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006777
6,777
Mo-molybdopterin cofactor biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands.
[ "ISSN:09498257", "PMID:22370186", "PMID:23201473" ]
null
[ "Mo-molybdopterin cofactor anabolism", "Mo-molybdopterin cofactor biosynthesis", "Mo-molybdopterin cofactor formation", "Mo-molybdopterin cofactor synthesis", "Moco biosynthesis", "Moco biosynthetic process", "molybdenum cofactor biosynthetic process" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "RELATED" ]
[]
[]
[ "MetaCyc:PWY-6823" ]
[ "GO:0019720", "GO:0032324" ]
[ "has_part GO:0018315", "has_part GO:0061798", "has_part GO:0061799" ]
[ "has_part", "has_part", "has_part" ]
[ "GO:0018315", "GO:0061798", "GO:0061799" ]
[ "GO:0018315", "GO:0019720", "GO:0032324", "GO:0061798", "GO:0061799" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006778
6,778
porphyrin-containing compound metabolic process
biological_process
The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
[ "GOC:jl", "ISBN:0198506732", "Wikipedia:Porphyrin#Natural_formation" ]
null
[ "porphyrin metabolic process", "porphyrin metabolism" ]
[ "RELATED", "RELATED" ]
[]
[]
[ "Reactome:R-HSA-189445 \"Metabolism of porphyrins\"" ]
[ "GO:0033013" ]
[]
[]
[]
[ "GO:0033013" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006779
6,779
porphyrin-containing compound biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
[ "GOC:jl", "ISBN:0198506732", "Wikipedia:Porphyrin#Natural_formation" ]
null
[ "porphyrin anabolism", "porphyrin biosynthesis", "porphyrin biosynthetic process", "porphyrin formation", "porphyrin synthesis" ]
[ "RELATED", "RELATED", "RELATED", "RELATED", "RELATED" ]
[]
[]
[]
[ "GO:0006778", "GO:0033014" ]
[]
[]
[]
[ "GO:0006778", "GO:0033014" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0006780
6,780
uroporphyrinogen III biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of uroporphyrinogen III.
[ "GOC:ai" ]
null
[ "uroporphyrinogen III anabolism", "uroporphyrinogen III biosynthesis", "uroporphyrinogen III formation", "uroporphyrinogen III synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006779", "GO:0046394", "GO:0046502" ]
[]
[]
[]
[ "GO:0006779", "GO:0046394", "GO:0046502" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0006781
6,781
succinyl-CoA pathway
biological_process
The chemical reactions that utilize succinyl-CoA in the synthesis of protoporphyrin IX.
[ "GOC:isa_complete", "ISBN:0879010479" ]
null
[ "biosynthesis of protoporphyrin IX via succinyl CoA", "biosynthesis of protoporphyrin IX via succinyl-CoA", "biosynthetic process of protoporphyrin IX via succinyl CoA", "biosynthetic process of protoporphyrin IX via succinyl-CoA", "succinyl CoA pathway" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006104", "GO:0006779" ]
[ "part_of GO:0006780" ]
[ "part_of" ]
[ "GO:0006780" ]
[ "GO:0006104", "GO:0006779", "GO:0006780" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006782
6,782
protoporphyrinogen IX biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX.
[ "GOC:curators" ]
null
[ "protoporphyrinogen IX anabolism", "protoporphyrinogen IX biosynthesis", "protoporphyrinogen IX formation", "protoporphyrinogen IX synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006779", "GO:0046501" ]
[ "part_of GO:0006783" ]
[ "part_of" ]
[ "GO:0006783" ]
[ "GO:0006779", "GO:0006783", "GO:0046501" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0006783
6,783
heme biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors.
[ "GOC:jl", "PMID:11788607" ]
null
[ "haem biosynthesis", "haem biosynthetic process", "heme anabolism", "heme biosynthesis", "heme formation", "heme synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[ "Reactome:R-HSA-189451 \"Heme biosynthesis\"" ]
[ "GO:0006779", "GO:0042168", "GO:0046148" ]
[]
[]
[]
[ "GO:0006779", "GO:0042168", "GO:0046148" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006784
6,784
heme A biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of heme A, a derivative of heme found in cytochrome aa3.
[ "GOC:ai", "PMID:11788607" ]
null
[ "haem A biosynthesis", "haem A biosynthetic process", "heme A anabolism", "heme A biosynthesis", "heme A formation", "heme A synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006783" ]
[]
[]
[]
[ "GO:0006783" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0006785
6,785
heme B biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of heme B, a Fe(II) porphyrin complex readily isolated from the hemoglobin of beef blood, but also found in other proteins including other hemoglobins, myoglobins, cytochromes P-450, catalases, peroxidases as well as b type cytochromes.
[ "GOC:yaf", "PMID:29414780" ]
null
[ "haem B biosynthesis", "haem B biosynthetic process", "heme B anabolism", "heme B biosynthesis", "heme B formation", "heme B synthesis", "protoheme biosynthesis", "protoheme biosynthetic process" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[ "MetaCyc:HEME-BIOSYNTHESIS-II", "MetaCyc:HEME-BIOSYNTHESIS-II-1", "MetaCyc:HEMESYN2-PWY", "MetaCyc:PWY-7552", "MetaCyc:PWY-7766" ]
[ "GO:0006783" ]
[]
[]
[]
[ "GO:0006783" ]
[]
[]
[]
[]
[]
[ "skos:narrowMatch MetaCyc:HEME-BIOSYNTHESIS-II", "skos:narrowMatch MetaCyc:HEME-BIOSYNTHESIS-II-1", "skos:narrowMatch MetaCyc:HEMESYN2-PWY", "skos:narrowMatch MetaCyc:PWY-7552", "skos:narrowMatch MetaCyc:PWY-7766", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31634\" xsd:anyURI"...
null
null
false
true
3
GO:0006786
6,786
heme C biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of heme c, a derivative of heme found in cytochromes c, b4, and f.
[ "GOC:curators", "PubChem_Compound:122208" ]
null
[ "haem C biosynthesis", "haem C biosynthetic process", "heme C anabolism", "heme C biosynthesis", "heme C formation", "heme C synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006783" ]
[]
[]
[]
[ "GO:0006783" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006788
6,788
heme oxidation
biological_process
The chemical reactions and pathways resulting in the loss of electrons from one or more atoms in heme.
[ "GOC:mah" ]
null
[ "haem oxidation" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0042168" ]
[ "part_of GO:0006787" ]
[ "part_of" ]
[ "GO:0006787" ]
[ "GO:0006787", "GO:0042168" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0006789
6,789
bilirubin conjugation
biological_process
The chemical reactions and pathways resulting in the formation of bilirubin monoglucuronide or bilirubin diglucuronide, water-soluble derivatives of bilirubin.
[ "DOI:10.1016/0305-0491(80)90243-6" ]
null
[]
[]
[]
[]
[]
[ "GO:0006787" ]
[]
[]
[]
[ "GO:0006787" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006790
6,790
sulfur compound metabolic process
biological_process
The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione.
[ "GOC:ai" ]
null
[ "sulfur metabolism", "sulphur metabolic process", "sulphur metabolism" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[ "goslim_chembl", "goslim_drosophila", "goslim_generic", "goslim_pir", "goslim_pombe", "goslim_prokaryote" ]
[ "Wikipedia:Sulfur_metabolism" ]
[ "GO:0008152" ]
[]
[]
[]
[ "GO:0008152" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006791
6,791
sulfur utilization
biological_process
A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary sulfur sources and then activates genes to scavenge the last traces of the primary sulfur source and to transport and metabolize alternate sulfur sources. The utilization process begins when the cell...
[ "GOC:mah", "GOC:mlg" ]
null
[ "sulphur utilization" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0031667" ]
[ "has_part GO:0006790", "has_part GO:0072348" ]
[ "has_part", "has_part" ]
[ "GO:0006790", "GO:0072348" ]
[ "GO:0006790", "GO:0031667", "GO:0072348" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006792
6,792
regulation of sulfur utilization
biological_process
Any process that modulates the frequency, rate or extent of sulfur utilization.
[ "GOC:curators" ]
null
[ "regulation of sulphur utilization" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0032107" ]
[ "regulates GO:0006791" ]
[ "regulates" ]
[ "GO:0006791" ]
[ "GO:0006791", "GO:0032107" ]
[ "GO:0065007", "regulates GO:0006791" ]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0006793
6,793
phosphorus metabolic process
biological_process
The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus.
[ "GOC:ai" ]
null
[ "phosphorus metabolism" ]
[ "EXACT" ]
[]
[ "goslim_pir" ]
[]
[ "GO:0008152" ]
[]
[]
[]
[ "GO:0008152" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006794
6,794
phosphorus utilization
biological_process
A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary phosphorus source and then activates genes to scavenge the last traces of the primary phosphorus source and to transport and metabolize alternative phosphorus sources. The utilization process begins ...
[ "GOC:mah", "GOC:mlg" ]
null
[]
[]
[]
[]
[]
[ "GO:0006793" ]
[]
[]
[]
[ "GO:0006793" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0006795
6,795
regulation of phosphorus utilization
biological_process
Any process that modulates the frequency, rate or extent of phosphorus utilization.
[ "GOC:curators" ]
null
[]
[]
[]
[]
[]
[ "GO:0051174" ]
[ "regulates GO:0006794" ]
[ "regulates" ]
[ "GO:0006794" ]
[ "GO:0006794", "GO:0051174" ]
[ "GO:0065007", "regulates GO:0006794" ]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006796
6,796
phosphate-containing compound metabolic process
biological_process
The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid.
[ "GOC:ai" ]
null
[ "phosphate metabolic process", "phosphate metabolism" ]
[ "RELATED", "EXACT" ]
[]
[]
[]
[ "GO:0006793" ]
[]
[]
[]
[ "GO:0006793" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006797
6,797
polyphosphate metabolic process
biological_process
The chemical reactions and pathways involving a polyphosphate, the anion or salt of polyphosphoric acid.
[ "GOC:curators", "ISBN:0198506732" ]
null
[ "polyphosphate metabolism" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0006793", "GO:0043436" ]
[]
[]
[]
[ "GO:0006793", "GO:0043436" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006799
6,799
polyphosphate biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of a polyphosphate, the anion or salt of polyphosphoric acid.
[ "ISBN:0198506732" ]
null
[ "polyphosphate anabolism", "polyphosphate biosynthesis", "polyphosphate formation", "polyphosphate synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006797", "GO:0009058" ]
[]
[]
[]
[ "GO:0006797", "GO:0009058" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006800
6,800
obsolete oxygen and reactive oxygen species metabolic process
biological_process
OBSOLETE. The chemical reactions and pathways involving dioxygen (O2), or any of the reactive oxygen species, e.g. superoxide anions (O2-), hydrogen peroxide (H2O2), and hydroxyl radicals (-OH).
[ "GOC:jl", "PMID:12115731" ]
This term was made obsolete because, as part of the GO/ChEBI alignment effort, curators determined that oxygen and reactive oxygen species should not be grouped together.
[ "oxygen and active oxygen species metabolism", "oxygen and AOS metabolism", "oxygen and reactive oxidative species metabolism", "oxygen and reactive oxygen intermediate metabolism", "oxygen and reactive oxygen species metabolic process", "oxygen and reactive oxygen species metabolism", "oxygen and ROI m...
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0072592", "GO:0072593" ]
[]
null
null
true
true
4
GO:0006801
6,801
superoxide metabolic process
biological_process
The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species.
[ "GOC:jl" ]
null
[ "oxygen free radical metabolic process", "oxygen free radical metabolism", "superoxide free radical metabolic process", "superoxide free radical metabolism", "superoxide metabolism" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0072593" ]
[]
[]
[]
[ "GO:0072593" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006802
6,802
obsolete catalase reaction
biological_process
OBSOLETE. The processes involved in the induction or activation of catalase, an enzyme that catalyzes the conversion of H2O2 into H2O.
[ "GOC:jl", "PMID:11245904" ]
This term was made obsolete because it represents a molecular function.
[ "catalase reaction", "hydroperoxidase reaction" ]
[ "EXACT", "RELATED" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0004096" ]
[]
null
null
true
true
4
GO:0006803
6,803
obsolete glutathione conjugation reaction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function and not a biological process.
[ "glutathione conjugation reaction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0004364" ]
[]
[]
null
null
true
true
6
GO:0006804
6,804
obsolete peroxidase reaction
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents a molecular function.
[ "peroxidase reaction" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0004601" ]
[]
[]
null
null
true
true
4
GO:0006805
6,805
xenobiotic metabolic process
biological_process
The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.
[ "GOC:cab2", "GOC:krc" ]
null
[ "drug metabolic process", "drug metabolism", "xenobiotic metabolism" ]
[ "RELATED", "RELATED", "EXACT" ]
[ "GO:0017144" ]
[ "goslim_chembl", "goslim_pir" ]
[ "Reactome:R-HSA-211859 \"Biological oxidations\"", "Reactome:R-HSA-211981 \"Xenobiotics\"", "Reactome:R-HSA-2161541 \"Abacavir metabolism\"", "Reactome:R-HSA-9748784 \"Drug ADME\"", "Wikipedia:Drug_metabolism", "Wikipedia:Xenobiotic_metabolism" ]
[ "GO:0008152" ]
[ "part_of GO:0071466" ]
[ "part_of" ]
[ "GO:0071466" ]
[ "GO:0008152", "GO:0071466" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19460\" xsd:anyURI" ]
null
null
false
true
9
GO:0006807
6,807
obsolete nitrogen compound metabolic process
biological_process
OBSOLETE. The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
[ "GOC:jl", "ISBN:0198506732" ]
The reason for obsoletion is that this term was an unnecessary grouping term.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0008152" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/26424\" xsd:anyURI" ]
null
null
true
true
7
GO:0006809
6,809
nitric oxide biosynthetic process
biological_process
The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.
[ "GOC:ai" ]
null
[ "nitric oxide anabolism", "nitric oxide biosynthesis", "nitric oxide formation", "nitric oxide synthesis" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0009058", "GO:0046209" ]
[]
[]
[]
[ "GO:0009058", "GO:0046209" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006811
6,811
monoatomic ion transport
biological_process
The directed movement of a monoatomic ion into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Monatomic ions (also called simple ions) are ions consisting of exactly one atom.
[ "GOC:ai" ]
null
[ "ion transport" ]
[ "BROAD" ]
[]
[ "goslim_drosophila", "goslim_pir", "goslim_yeast" ]
[]
[ "GO:0006810" ]
[]
[]
[]
[ "GO:0006810" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006812
6,812
monoatomic cation transport
biological_process
The directed movement of a monoatomic cation, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Monatomic cations (also called simple cations) are positively charged ions consisting of exactly one atom.
[ "GOC:ai" ]
null
[ "cation transport", "di-, tri-valent inorganic cation transport", "trivalent inorganic cation transport" ]
[ "BROAD", "NARROW", "NARROW" ]
[ "GO:0006819", "GO:0015674", "GO:0072512" ]
[]
[]
[ "GO:0006811" ]
[]
[]
[]
[ "GO:0006811" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0006813
6,813
potassium ion transport
biological_process
The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:ai" ]
null
[ "cellular potassium ion transport", "K+ conductance", "low voltage-dependent potassium channel auxiliary protein activity", "low voltage-gated potassium channel auxiliary protein activity", "potassium conductance", "potassium ion conductance", "potassium transport", "sodium/potassium transport" ]
[ "EXACT", "RELATED", "RELATED", "RELATED", "NARROW", "NARROW", "RELATED", "BROAD" ]
[ "GO:0015458", "GO:0071804" ]
[]
[]
[ "GO:0030001" ]
[]
[]
[]
[ "GO:0030001" ]
[]
[]
[]
[]
[]
[]
mah
2010-09-03T02:39:22Z
false
true
8
GO:0006814
6,814
sodium ion transport
biological_process
The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:ai" ]
null
[ "mitochondrial sodium/calcium ion exchange", "sodium channel auxiliary protein activity", "sodium transport", "sodium/potassium transport", "sodium:calcium exchange", "sodium:solute transport" ]
[ "NARROW", "RELATED", "EXACT", "BROAD", "NARROW", "NARROW" ]
[ "GO:0006834", "GO:0016974" ]
[]
[]
[ "GO:0030001" ]
[]
[]
[]
[ "GO:0030001" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0006815
6,815
obsolete sodium/potassium transport
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:curators" ]
This term was made obsolete because it is a composite term that represents two individual processes.
[ "sodium/potassium transport" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0006813", "GO:0006814" ]
[]
null
null
true
true
2
GO:0006816
6,816
calcium ion transport
biological_process
The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:ai" ]
null
[ "calcium transport", "mitochondrial sodium/calcium ion exchange", "sodium:calcium exchange" ]
[ "EXACT", "NARROW", "NARROW" ]
[]
[]
[]
[ "GO:0030001" ]
[]
[]
[]
[ "GO:0030001" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006817
6,817
phosphate ion transport
biological_process
The directed movement of phosphate ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:krc" ]
null
[ "phosphate transport" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0015698" ]
[]
[]
[]
[ "GO:0015698" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006820
6,820
monoatomic anion transport
biological_process
The directed movement of a monoatomic anion, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Monatomic anions (also called simple anions) are negatively charged ions consisting of exactly one atom.
[ "GOC:ai" ]
null
[ "anion transport" ]
[ "BROAD" ]
[ "GO:0006822" ]
[]
[]
[ "GO:0006811" ]
[]
[]
[]
[ "GO:0006811" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006821
6,821
chloride transport
biological_process
The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:krc" ]
null
[]
[]
[]
[]
[]
[ "GO:0006820", "GO:0015698" ]
[]
[]
[]
[ "GO:0006820", "GO:0015698" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0006823
6,823
obsolete heavy metal ion transport
biological_process
OBSOLETE. The directed movement of heavy metal ions into, out of or within a cell, or between cells. Heavy metals are those that can form a coordination bond with a protein, as opposed to an alkali or alkaline-earth metal that can only form an ionic bond; this definition includes the following biologically relevant hea...
[ "GOC:kd", "GOC:mah" ]
This term was made obsolete because 'heavy metal' is an ambiguous grouping term which has no set meaning (see Pure Appl. Chem. Vol. 74, No. 5, pp. 793-807, 2002, for more information).
[ "heavy metal ion transport" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0030001" ]
[]
null
null
true
true
9
GO:0006824
6,824
cobalt ion transport
biological_process
The directed movement of cobalt (Co2+) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:ai" ]
null
[ "cobalt transport" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0000041", "GO:0098655" ]
[]
[]
[]
[ "GO:0000041", "GO:0098655" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006826
6,826
iron ion transport
biological_process
The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:ai" ]
null
[ "ferric ion import", "ferric ion transport", "ferric iron import", "ferric iron transport", "ferric iron uptake", "ferrous ion transport", "ferrous iron transport", "iron ion import", "iron transport" ]
[ "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "RELATED", "EXACT" ]
[ "GO:0015681", "GO:0015682", "GO:0015684", "GO:0033216", "GO:0097286" ]
[]
[]
[ "GO:0000041" ]
[]
[]
[]
[ "GO:0000041" ]
[]
[]
[]
[]
[]
[]
pr
2012-04-18T03:33:45Z
false
true
5
GO:0006828
6,828
manganese ion transport
biological_process
The directed movement of manganese (Mn) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:ai" ]
null
[]
[]
[]
[]
[]
[ "GO:0000041" ]
[]
[]
[]
[ "GO:0000041" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006829
6,829
zinc ion transport
biological_process
The directed movement of zinc (Zn II) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:ai" ]
null
[ "zinc II ion transport", "zinc transport" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0000041" ]
[]
[]
[]
[ "GO:0000041" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006832
6,832
obsolete small molecule transport
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:curators" ]
This term was made obsolete because it was an unnecessary grouping term.
[ "small molecule transport" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0006810" ]
[]
null
null
true
true
5
GO:0006833
6,833
water transport
biological_process
The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:ai" ]
null
[]
[]
[]
[]
[ "Reactome:R-HSA-445717 \"Aquaporin-mediated transport\"" ]
[ "GO:0042044" ]
[]
[]
[]
[ "GO:0042044" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0006835
6,835
dicarboxylic acid transport
biological_process
The directed movement of dicarboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:krc" ]
null
[ "sodium:dicarboxylate transport" ]
[ "RELATED" ]
[ "GO:0006841" ]
[]
[]
[ "GO:0046942" ]
[]
[]
[]
[ "GO:0046942" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006836
6,836
neurotransmitter transport
biological_process
The directed movement of a neurotransmitter into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Neurotransmitters are any chemical substance that is capable of transmitting (or inhibiting the transmission of) a nerve impulse from a neuron to another cell.
[ "GOC:ai" ]
null
[ "sodium:neurotransmitter transport" ]
[ "NARROW" ]
[]
[ "goslim_pir" ]
[ "Reactome:R-HSA-181429 \"Serotonin Neurotransmitter Release Cycle\"", "Reactome:R-HSA-181430 \"Norepinephrine Neurotransmitter Release Cycle\"", "Reactome:R-HSA-210500 \"Glutamate Neurotransmitter Release Cycle\"", "Reactome:R-HSA-212676 \"Dopamine Neurotransmitter Release Cycle\"", "Reactome:R-HSA-264642 \...
[ "GO:0006810" ]
[]
[]
[]
[ "GO:0006810" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006837
6,837
serotonin transport
biological_process
The directed movement of serotonin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Serotonin (5-hydroxytryptamine) is a monoamine neurotransmitter occurring in the peripheral and central nervous systems.
[ "GOC:ai" ]
null
[]
[]
[]
[]
[]
[ "GO:0015844", "GO:0015850" ]
[]
[]
[]
[ "GO:0015844", "GO:0015850" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006838
6,838
obsolete allantoin/allantoate transport
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:curators" ]
This term was made obsolete because it is a composite term that represents two individual processes.
[ "allantoin/allantoate transport" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0015719", "GO:0015720" ]
[]
null
null
true
true
2
GO:0006839
6,839
mitochondrial transport
biological_process
Transport of substances into, out of or within a mitochondrion.
[ "GOC:ai" ]
null
[]
[]
[]
[ "goslim_drosophila" ]
[]
[ "GO:0046907" ]
[]
[]
[]
[ "GO:0046907" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22316\" xsd:anyURI" ]
null
null
false
true
2
GO:0006840
6,840
obsolete mitochondrial alpha-ketoglutarate/malate transport
biological_process
OBSOLETE. The directed movement of alpha-ketoglutarate and malate into, out of or within a mitochondrion.
[ "GOC:ai" ]
This term was made obsolete because it represents a function rather than a process.
[ "mitochondrial alpha-ketoglutarate/malate transport", "mitochondrial oxoglutarate/malate transport" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0006839", "GO:0015367", "GO:0015742", "GO:0015743" ]
[]
null
null
true
true
8
GO:0006842
6,842
tricarboxylic acid transport
biological_process
The directed movement of tricarboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:krc" ]
null
[]
[]
[]
[]
[]
[ "GO:0046942" ]
[]
[]
[]
[ "GO:0046942" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006844
6,844
obsolete acyl carnitine transport
biological_process
OBSOLETE. The directed movement of acyl carnitine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Acyl carnitine is the condensation product of a carboxylic acid and carnitine and is the transport form for a fatty acid crossing the mitochondrial membrane.
[ "GOC:ai" ]
This term was obsoleted because it represents the same process as acyl carnitine transmembrane transport ; GO:1902616.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:1902616" ]
[]
[]
null
null
true
true
2
GO:0006849
6,849
plasma membrane pyruvate transport
biological_process
The directed movement of pyruvate, 2-oxopropanoate, across a plasma membrane.
[ "GOC:ai" ]
null
[]
[]
[]
[]
[]
[ "GO:1901475" ]
[]
[]
[]
[ "GO:1901475" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006850
6,850
pyruvate import into mitochondria
biological_process
The process in which pyruvate is transported from the cytosol into the mitochondrial matrix.
[ "GOC:vw", "PMID:22628558" ]
null
[ "mitochondrial pyruvate transport", "pyruvate membrane transport in mitochondria", "pyruvate membrane transport in mitochondrion", "pyruvate transmembrane transport in mitochondria", "pyruvate transmembrane transport in mitochondrion" ]
[ "RELATED", "RELATED", "RELATED", "RELATED", "RELATED" ]
[ "GO:1902361" ]
[]
[]
[ "GO:0170036", "GO:1901475" ]
[]
[]
[]
[ "GO:0170036", "GO:1901475" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29962\" xsd:anyURI" ]
dph
2013-08-15T11:19:35Z
false
true
5
GO:0006851
6,851
mitochondrial calcium ion transmembrane transport
biological_process
The process in which a calcium ion (Ca2+) is transported across a mitochondrial membrane, into or out of the mitochondrion.
[ "GOC:ai" ]
null
[ "mitochondrial calcium transport" ]
[ "EXACT" ]
[]
[]
[ "Reactome:R-HSA-8949215 \"Mitochondrial calcium ion transport\"" ]
[ "GO:0070588" ]
[]
[]
[]
[ "GO:0070588" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0006852
6,852
obsolete mitochondrial sodium/calcium ion exchange
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:ai" ]
This term was made obsolete because it represents function rather than a process.
[ "mitochondrial sodium/calcium exchange", "mitochondrial sodium/calcium ion exchange" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005432", "GO:0006814", "GO:0006816", "GO:0006839" ]
[]
null
null
true
true
9
GO:0006853
6,853
carnitine shuttle
biological_process
The transfer of acyl groups to and from acyl-CoA molecules to form O-acylcarnitine, which can exchange across the mitochondrial inner membrane with unacylated carnitine.
[ "ISBN:0198547684" ]
See also the cellular component term 'mitochondrial inner membrane ; GO:0005743'.
[]
[]
[]
[]
[ "Reactome:R-HSA-200425 \"Carnitine shuttle\"", "Wikipedia:Carnitine#Role_in_fatty_acid_metabolism" ]
[ "GO:0015909", "GO:0032365", "GO:1902001", "GO:1990542" ]
[]
[]
[]
[ "GO:0015909", "GO:0032365", "GO:1902001", "GO:1990542" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0006854
6,854
obsolete ATP/ADP exchange
biological_process
OBSOLETE. (Was not defined before being made obsolete).
[ "GOC:jl" ]
This term was made obsolete because it represents a molecular function and not a biological process.
[ "ATP/ADP exchange" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005471" ]
[]
[]
null
null
true
true
2
GO:0006855
6,855
xenobiotic transmembrane transport
biological_process
The process in which a xenobiotic, a compound foreign to the organism exposed to it, is transported across a membrane. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.
[ "GOC:ai", "GOC:bf", "GOC:krc" ]
Note that this term is not intended for use in annotating lateral movement within membranes.
[ "drug membrane transport", "drug transmembrane transport", "multidrug transport" ]
[ "EXACT", "RELATED", "RELATED" ]
[]
[]
[]
[ "GO:0042908", "GO:0055085" ]
[]
[]
[]
[ "GO:0042908", "GO:0055085" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19460\" xsd:anyURI" ]
null
null
false
true
4
GO:0006856
6,856
eye pigment precursor transport
biological_process
The directed movement of eye pigment precursors, the inactive forms of visual pigments, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "GOC:ai" ]
null
[]
[]
[]
[]
[]
[ "GO:0006810" ]
[ "part_of GO:0048066" ]
[ "part_of" ]
[ "GO:0048066" ]
[ "GO:0006810", "GO:0048066" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006857
6,857
oligopeptide transport
biological_process
The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
[ "ISBN:0198506732" ]
null
[]
[]
[]
[]
[]
[ "GO:0015833", "GO:0071705" ]
[]
[]
[]
[ "GO:0015833", "GO:0071705" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006858
6,858
extracellular transport
biological_process
The transport of substances that occurs outside cells.
[ "GOC:curators" ]
null
[]
[]
[]
[]
[]
[ "GO:0006810" ]
[ "occurs_in GO:0005576" ]
[ "occurs_in" ]
[ "GO:0005576" ]
[ "GO:0005576", "GO:0006810" ]
[ "GO:0006810", "occurs_in GO:0005576" ]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006859
6,859
obsolete extracellular carbohydrate transport
biological_process
OBSOLETE. The directed extracellular movement of carbohydrates.
[ "GOC:ai" ]
This term was obsoleted because there is no evidence that this process exists.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20569\" xsd:anyURI" ]
null
null
true
true
6
GO:0006860
6,860
extracellular amino acid transport
biological_process
The directed extracellular movement of amino acids.
[ "GOC:ai" ]
null
[]
[]
[]
[]
[]
[ "GO:0006858", "GO:0006865" ]
[]
[]
[]
[ "GO:0006858", "GO:0006865" ]
[ "GO:0006865", "occurs_in GO:0005576" ]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0006862
6,862
nucleotide transport
biological_process
The directed movement of a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate, into, out of or within a cell.
[ "ISBN:0198506732" ]
null
[]
[]
[]
[]
[]
[ "GO:0015748", "GO:0015931" ]
[]
[]
[]
[ "GO:0015748", "GO:0015931" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0006863
6,863
purine nucleobase transport
biological_process
The directed movement of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
[ "ISBN:0198506732" ]
null
[ "purine base transmembrane transport", "purine base transport", "purine transmembrane transport", "purine transport" ]
[ "EXACT", "EXACT", "RELATED", "RELATED" ]
[ "GO:0015852" ]
[]
[]
[ "GO:0015851" ]
[]
[]
[]
[ "GO:0015851" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0006864
6,864
pyrimidine nucleotide transport
biological_process
The directed movement of a pyrimidine nucleotide, any compound consisting of a pyrimidine nucleoside esterified with (ortho)phosphate, into, out of or within a cell.
[ "GOC:ai" ]
null
[]
[]
[]
[]
[]
[ "GO:0006862" ]
[]
[]
[]
[ "GO:0006862" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
3