Datasets:
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GO

Dataset card Data Studio Files
xet
 Community
go_id
string
go_numeric_id
int64
name
string
namespace
string
definition
string
definition_xrefs
list
comment
string
synonyms
list
synonym_scopes
list
alt_ids
list
subsets
list
xrefs
list
is_a_ids
list
relationship_edges
list
relationship_types
list
relationship_target_ids
list
parent_ids
list
intersection_of
list
union_of
list
disjoint_from
list
replaced_by
list
consider
list
property_values
list
created_by
string
creation_date
string
is_obsolete
bool
in_go_basic
bool
split_bucket
int64
GO:0000821
821
obsolete regulation of arginine metabolic process
biological_process
OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
[ "GOC:curators" ]
This term was obsoleted because it is an unnecessary grouping class.
[ "regulation of arginine metabolism" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30570\" xsd:anyURI" ]
null
null
true
true
1
GO:0000822
822
inositol hexakisphosphate binding
molecular_function
Binding to inositol hexakisphosphate.
[ "GOC:curators" ]
null
[ "InsP6 binding", "IP6 binding" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0043168", "GO:0043178" ]
[]
[]
[]
[ "GO:0043168", "GO:0043178" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000823
823
inositol-1,4,5-trisphosphate 6-kinase activity
molecular_function
Catalysis of the reaction: 1D-myo-inositol 1,4,5-trisphosphate + ATP = 1D-myo-inositol 1,4,5,6-tetrakisphosphate + ADP + H+.
[ "RHEA:17717" ]
null
[ "inositol polyphosphate multikinase activity", "inositol trisphosphate 6-kinase activity", "IpmK" ]
[ "BROAD", "BROAD", "BROAD" ]
[]
[]
[ "KEGG_REACTION:R05800", "MetaCyc:2.7.1.151-RXN", "RHEA:17717" ]
[ "GO:0051766" ]
[]
[]
[]
[ "GO:0051766" ]
[]
[]
[]
[]
[]
[ "skos:broadMatch EC:2.7.1.151", "skos:exactMatch KEGG_REACTION:R05800", "skos:exactMatch MetaCyc:2.7.1.151-RXN", "skos:exactMatch RHEA:17717", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28199\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issue...
null
null
false
true
5
GO:0000824
824
inositol-1,4,5,6-tetrakisphosphate 3-kinase activity
molecular_function
Catalysis of the reaction: 1D-myo-inositol 1,4,5,6-tetrakisphosphate + ATP = 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ADP + H+.
[ "RHEA:11856" ]
null
[ "1D-myo-inositol-tetrakisphosphate 3-kinase activity", "inositol 1,4,5,6-tetrakisphosphate 3-kinase activity", "inositol polyphosphate multikinase activity", "inositol tetrakisphosphate 3-kinase activity", "IpmK" ]
[ "BROAD", "EXACT", "BROAD", "BROAD", "BROAD" ]
[]
[]
[ "KEGG_REACTION:R05801", "MetaCyc:RXN-7162", "Reactome:R-HSA-1855185 \"I(1,4,5,6)P4 is phosphorylated to I(1,3,4,5,6)P5 by IPMK in the nucleus\"", "RHEA:11856" ]
[ "GO:0051765" ]
[]
[]
[]
[ "GO:0051765" ]
[]
[]
[]
[]
[]
[ "skos:broadMatch EC:2.7.1.151", "skos:exactMatch KEGG_REACTION:R05801", "skos:exactMatch MetaCyc:RXN-7162", "skos:exactMatch RHEA:11856", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28385\" xsd:anyURI" ]
null
null
false
true
7
GO:0000825
825
inositol-1,3,4,5-tetrakisphosphate 6-kinase activity
molecular_function
Catalysis of the reaction: 1D-myo-inositol 1,3,4,5-tetrakisphosphate + ATP = 1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ADP + H+.
[ "MetaCyc:RXN-7184" ]
null
[ "1D-myo-inositol-tetrakisphosphate 6-kinase activity", "inositol 1,3,4,5-tetrakisphosphate 6-kinase activity", "inositol tetrakisphosphate 6-kinase activity" ]
[ "BROAD", "EXACT", "BROAD" ]
[]
[]
[ "KEGG_REACTION:R10953", "MetaCyc:RXN-7184", "Reactome:R-HSA-1855206 \"I(1,3,4,5)P4 is phosphorylated to I(1,3,4,5,6)P5 by IPMK in the nucleus\"" ]
[ "GO:0051765" ]
[]
[]
[]
[ "GO:0051765" ]
[]
[]
[]
[]
[]
[ "skos:broadMatch EC:2.7.1.151", "skos:exactMatch KEGG_REACTION:R10953", "skos:exactMatch MetaCyc:RXN-7184", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28385\" xsd:anyURI" ]
null
null
false
true
8
GO:0000826
826
obsolete inositol pyrophosphate synthase activity
molecular_function
OBSOLETE. Catalysis of the phosphorylation of inositol phosphates which possess diphosphate bonds.
[ "GOC:elh", "PMID:16429326" ]
This term was made obsolete because it is incorrectly defined; 'inositol pyrophosphate' is a inositol derivative to which one (or more) pyrophosphate moieties are attached. 'Inositol pyrophosphate synthase' refers to a class of enzymes that catalyze various different reactions that result in the formation of an IP, so ...
[ "inositol diphosphate synthase activity", "inositol pyrophosphate synthase activity" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
9
GO:0000827
827
inositol-1,3,4,5,6-pentakisphosphate kinase activity
molecular_function
Catalysis of the reaction: ATP + 1D-myo-inositol 1,3,4,5,6-pentakisphosphate = ADP + diphospho-1D-myo-inositol tetrakisphosphate. The isomeric configuration of diphospho-1D-myo-inositol tetrakisphosphate is unknown.
[ "GOC:elh", "PMID:11311242" ]
null
[]
[]
[]
[]
[ "Reactome:R-HSA-1855181 \"I(1,3,4,5,6)P5 is phosphorylated to 5-PP-IP4 by IP6K1/2 in the nucleus\"", "Reactome:R-HSA-1855223 \"I(1,3,4,5,6)P5 is phosphorylated to 5-PP-IP4 by IP6K1/3 in the cytosol\"" ]
[ "GO:0016776", "GO:0180030" ]
[]
[]
[]
[ "GO:0016776", "GO:0180030" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28385\" xsd:anyURI" ]
null
null
false
true
8
GO:0000828
828
inositol hexakisphosphate kinase activity
molecular_function
Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + diphospho-1D-myo-inositol-pentakisphosphate. The isomeric configuration of diphospho-1D-myo-inositol-pentakisphosphate (PP-IP5) is unknown.
[ "GOC:elh", "GOC:vw", "PMID:16429326" ]
null
[ "IP6 kinase" ]
[ "EXACT" ]
[]
[]
[ "Reactome:R-HSA-1855207 \"IP6 is phosphorylated to 5-PP-IP5 by IP6K1/2 in the nucleus\"", "Reactome:R-HSA-1855216 \"IP6 is phosphorylated to 1-PP-IP5 by PPIP5K1/2 in the cytosol\"", "Reactome:R-HSA-1855227 \"IP6 is phosphorylated to 5-PP-IP5 by IP6K1/3 in the cytosol\"" ]
[ "GO:0016776", "GO:0180030" ]
[]
[]
[]
[ "GO:0016776", "GO:0180030" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/25136\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28385\" xsd:anyURI" ]
null
null
false
true
6
GO:0000829
829
diphosphoinositol pentakisphosphate kinase activity
molecular_function
Catalysis of the reaction: ATP + diphospho-1D-myo-inositol-pentakisphosphate = ADP + bis(diphospho)-1D-myo-inositol-tetrakisphosphate. The isomeric configurations of the diphospho-1D-myo-inositol-pentakisphosphate (PP-IP5) and bis(diphospho)-1D-myo-inositol-tetrakisphosphate (bis-PP-IP4) are unknown.
[ "GOC:elh", "PMID:16429326" ]
null
[ "inositol heptakisphosphate kinase activity", "PP-IP5 kinase activity" ]
[ "EXACT", "EXACT" ]
[]
[]
[ "Reactome:R-HSA-1855157 \"1-PP-IP5 is phosphorylated to 1,5-(PP)2-IP4 by IP6K1/2 in the nucleus\"", "Reactome:R-HSA-1855182 \"5-PP-IP5 is phosphorylated to 1,5-(PP)2-IP4 by PPIP5K1/2 in the cytosol\"", "Reactome:R-HSA-1855194 \"1-PP-IP5 is phosphorylated to 1,5-(PP)2-IP4 by IP6K1/3 in the cytosol\"" ]
[ "GO:0016776", "GO:0180030" ]
[]
[]
[]
[ "GO:0016776", "GO:0180030" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28385\" xsd:anyURI" ]
null
null
false
true
6
GO:0000831
831
inositol hexakisphosphate 6-kinase activity
molecular_function
Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 6-diphospho-1D-myo-inositol (1,2,3,4,5)pentakisphosphate.
[ "GOC:elh", "PMID:16429326" ]
null
[]
[]
[]
[]
[]
[ "GO:0000828" ]
[]
[]
[]
[ "GO:0000828" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0000832
832
inositol hexakisphosphate 5-kinase activity
molecular_function
Catalysis of the reaction: 1D-myo-inositol hexakisphosphate + ATP = 5-diphospho-1D-myo-inositol 1,2,3,4,6-pentakisphosphate + ADP.
[ "RHEA:12793" ]
null
[ "ATP:1D-myo-inositol-hexakisphosphate 5-phosphotransferase activity" ]
[ "EXACT" ]
[]
[]
[ "KEGG_REACTION:R09087", "MetaCyc:2.7.1.152-RXN", "RHEA:12793" ]
[ "GO:0000828" ]
[]
[]
[]
[ "GO:0000828" ]
[]
[]
[]
[]
[]
[ "skos:broadMatch EC:2.7.4.21", "skos:exactMatch KEGG_REACTION:R09087", "skos:exactMatch MetaCyc:2.7.1.152-RXN", "skos:exactMatch RHEA:12793", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28385\" xsd:anyURI" ]
null
null
false
true
6
GO:0000833
833
5-diphosphoinositol pentakisphosphate 4-kinase activity
molecular_function
Catalysis of the reaction: ATP + 5-diphospho-1D-myo-inositol (1,2,3,4,6)pentakisphosphate = ADP + 4,5-bis(diphospho)-1D-myo-inositol (1,2,3,6)tetrakisphosphate.
[ "GOC:elh", "PMID:16429326" ]
null
[ "diphosphoinositol-pentakisphosphate 4-kinase activity", "inositol heptakisphosphate 4-kinase activity", "IP7 4-kinase activity" ]
[ "BROAD", "BROAD", "EXACT" ]
[]
[]
[]
[ "GO:0000829" ]
[]
[]
[]
[ "GO:0000829" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28385\" xsd:anyURI" ]
null
null
false
true
9
GO:0000835
835
ER ubiquitin ligase complex
cellular_component
A ubiquitin ligase complex found in the ER.
[ "GOC:elh" ]
null
[]
[]
[]
[]
[]
[ "GO:0000153", "GO:0098796", "GO:0140534" ]
[ "part_of GO:0005789" ]
[ "part_of" ]
[ "GO:0005789" ]
[ "GO:0000153", "GO:0005789", "GO:0098796", "GO:0140534" ]
[ "GO:0000151", "part_of GO:0005783" ]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000836
836
Hrd1p ubiquitin ligase complex
cellular_component
A multiprotein complex that recognizes and ubiquitinates proteins with misfolded luminal and membrane domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Hrd1p. In mammals, this complex contains the ubiquitin ligase HRD1 (Synoviolin) or AMFR (gp78).
[ "GOC:bf", "GOC:elh", "PMID:16619026", "PMID:16873066", "PMID:21454652" ]
null
[ "HRD1 ubiquitin ligase complex" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0000835" ]
[]
[]
[]
[ "GO:0000835" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0000837
837
Doa10p ubiquitin ligase complex
cellular_component
A multiprotein complex that recognizes and ubiquitinates membrane proteins with misfolded cytosolic domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Ssm4p/Doa10p.
[ "GOC:elh", "PMID:16873066" ]
null
[ "Ssm4p ubiquitin ligase complex" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0000835" ]
[]
[]
[]
[ "GO:0000835" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0000838
838
Hrd1p ubiquitin ligase ERAD-M complex
cellular_component
A multiprotein complex that recognizes and ubiquitinates proteins with misfolded membrane domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Hrd1p.
[ "GOC:elh", "PMID:16873066" ]
null
[]
[]
[]
[]
[]
[ "GO:0000836" ]
[]
[]
[]
[ "GO:0000836" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0000839
839
Hrd1p ubiquitin ligase ERAD-L complex
cellular_component
A multiprotein complex that recognizes and ubiquitinates proteins with misfolded luminal domains during ER-associated protein degradation (ERAD). In S. cerevisiae, this complex contains the ubiquitin ligase Hrd1p.
[ "GOC:elh", "PMID:16873065", "PMID:16873066" ]
null
[]
[]
[]
[]
[]
[ "GO:0000836" ]
[]
[]
[]
[ "GO:0000836" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0000901
901
translation repressor activity, non-nucleic acid binding
molecular_function
Antagonizes the ribosome-mediated translation of mRNA into a polypeptide but does not bind directly to nucleic acid.
[ "GOC:clt" ]
null
[]
[]
[]
[]
[]
[ "GO:0030371" ]
[]
[]
[]
[ "GO:0030371" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/29089\" xsd:anyURI" ]
null
null
false
true
7
GO:0000902
902
cell morphogenesis
biological_process
The developmental process in which the size or shape of a cell is generated and organized.
[ "GOC:clt", "GOC:curators", "GOC:dph", "GOC:tb" ]
null
[ "cellular morphogenesis" ]
[ "EXACT" ]
[ "GO:0007148", "GO:0045790", "GO:0045791" ]
[ "goslim_chembl", "goslim_drosophila", "goslim_yeast" ]
[]
[ "GO:0009653" ]
[]
[]
[]
[ "GO:0009653" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0000903
903
obsolete regulation of cell shape during vegetative growth phase
biological_process
OBSOLETE. Any process that modulates the surface configuration of a cell during the vegetative growth phase. The vegetative growth phase is the growth phase during which single celled organisms reproduce by budding or other asexual methods.
[ "GOC:clt", "GOC:curators", "GOC:vw" ]
The reason for obsoletion is that biological phases should be captured as extensions.
[ "cell morphogenesis during vegetative growth phase", "cellular morphogenesis during vegetative growth", "regulation of cell morphogenesis during vegetative growth phase" ]
[ "RELATED", "RELATED", "RELATED" ]
[ "GO:0090061" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
null
null
true
true
9
GO:0000904
904
obsolete cell morphogenesis involved in differentiation
biological_process
OBSOLETE. The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism...
[ "GOC:curators" ]
This term is equivalent to cell morphogenesis.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000902" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/24299\" xsd:anyURI" ]
null
null
true
true
2
GO:0000905
905
sporocarp development involved in asexual reproduction
biological_process
The formation of a spore-bearing structure by fungus where spores will arise from asexual reproduction.
[ "GOC:clt", "GOC:mtg_sensu" ]
null
[ "conidium development", "fruiting body formation involved in asexual reproduction", "haploid fruiting", "homokaryotic fruiting", "imperfect stage fruiting body development", "monokaryotic fruiting" ]
[ "NARROW", "BROAD", "RELATED", "RELATED", "NARROW", "RELATED" ]
[]
[]
[]
[ "GO:0030584" ]
[ "part_of GO:0019954" ]
[ "part_of" ]
[ "GO:0019954" ]
[ "GO:0019954", "GO:0030584" ]
[ "GO:0030584", "part_of GO:0019954" ]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000906
906
6,7-dimethyl-8-ribityllumazine synthase activity
molecular_function
Catalysis of the reaction: 3,4-dihydroxy-2-butanone-4-phosphate + 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione = 6,7-dimethyl-8-ribityllumazine + phosphate.
[ "PMID:7559556" ]
null
[ "lumazine synthase activity" ]
[ "BROAD" ]
[]
[]
[ "EC:2.5.1.78", "MetaCyc:LUMAZINESYN-RXN", "RHEA:26152" ]
[ "GO:0016765" ]
[]
[]
[]
[ "GO:0016765" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:2.5.1.78", "skos:exactMatch RHEA:26152", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
2
GO:0000907
907
sulfonate dioxygenase activity
molecular_function
Catalysis of the reaction: sulfonate + 2-oxoglutarate + O2 = sulfite + aminoacetaldehyde + succinate + CO2.
[ "GOC:clt", "PMID:10482536" ]
null
[ "sulfonate/alpha-ketoglutarate dioxygenase activity", "sulphonate dioxygenase activity" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0016706" ]
[]
[]
[]
[ "GO:0016706" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0000908
908
taurine dioxygenase activity
molecular_function
Catalysis of the reaction: 2-oxoglutarate + O2 + taurine = aminoacetaldehyde + CO2 + succinate + sulfite.
[ "EC:1.14.11.17", "RHEA:15909" ]
null
[ "2-aminoethanesulfonate dioxygenase activity", "alpha-ketoglutarate-dependent taurine dioxygenase activity", "taurine, 2-oxoglutarate:O2 oxidoreductase (sulfite-forming)" ]
[ "RELATED", "RELATED", "RELATED" ]
[]
[]
[ "EC:1.14.11.17", "KEGG_REACTION:R05320", "MetaCyc:RXN0-299", "RHEA:15909" ]
[ "GO:0016706" ]
[]
[]
[]
[ "GO:0016706" ]
[]
[]
[]
[]
[]
[ "skos:exactMatch EC:1.14.11.17", "skos:exactMatch RHEA:15909", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30193\" xsd:anyURI" ]
null
null
false
true
7
GO:0000909
909
sporocarp development involved in sexual reproduction
biological_process
The process whose specific outcome is the progression of a fruiting body organ over time, from its formation to the mature structure. The fruiting body is a spore bearing structure. In fungi, the sporocarp (also known as fruiting body) is a multicellular structure on which spore-producing structures, such as basidia or...
[ "GOC:clt", "GOC:mtg_sensu" ]
null
[ "ascus development", "fruiting body development involved in sexual reproduction", "fruiting body formation involved in sexual reproduction", "perfect stage fruiting body development" ]
[ "NARROW", "BROAD", "BROAD", "NARROW" ]
[]
[]
[]
[ "GO:0030584" ]
[ "part_of GO:0019953" ]
[ "part_of" ]
[ "GO:0019953" ]
[ "GO:0019953", "GO:0030584" ]
[ "GO:0030584", "part_of GO:0019953" ]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000912
912
assembly of actomyosin apparatus involved in cytokinesis
biological_process
The assembly and arrangement of an apparatus composed of actin, myosin, and associated proteins that will function in cytokinesis.
[ "GOC:mtg_cell_cycle" ]
null
[ "actomyosin apparatus assembly involved in cytokinesis", "cytokinesis, formation of actomyosin apparatus", "formation of actomyosin apparatus involved in cytokinesis" ]
[ "EXACT", "EXACT", "RELATED" ]
[]
[]
[]
[ "GO:0022607", "GO:0032506" ]
[ "part_of GO:0061640" ]
[ "part_of" ]
[ "GO:0061640" ]
[ "GO:0022607", "GO:0032506", "GO:0061640" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0000913
913
preprophase band assembly
biological_process
The aggregation, arrangement and bonding together of a set of components to form the preprophase band, a dense band of microtubules that marks the position in the cell where cytokinesis will occur in cells that perform cytokinesis by cell plate formation.
[ "GOC:clt", "GOC:mah" ]
null
[ "preprophase band formation" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0022402", "GO:0022607" ]
[ "part_of GO:0000911" ]
[ "part_of" ]
[ "GO:0000911" ]
[ "GO:0000911", "GO:0022402", "GO:0022607" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0000914
914
phragmoplast assembly
biological_process
The formation of a structure composed of actin, myosin, and associated proteins that will function in cytokinesis in cells that perform cytokinesis by cell plate formation. The structure usually contains antiparallel microtubules and membrane (often visible as vesicles).
[ "GOC:clt" ]
null
[ "phragmoplast formation" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:1902407" ]
[ "part_of GO:0000911" ]
[ "part_of" ]
[ "GO:0000911" ]
[ "GO:0000911", "GO:1902407" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000915
915
actomyosin contractile ring assembly
biological_process
The process of assembly of a ring composed of actin, myosin, and associated proteins that will function in cytokinesis.
[ "GOC:clt", "GOC:dph", "GOC:tb" ]
null
[ "constriction ring assembly", "contractile ring assembly", "cytokinesis, actomyosin contractile ring assembly", "cytokinesis, actomyosin contractile ring formation", "cytokinesis, actomyosin ring biosynthesis", "cytokinesis, actomyosin ring formation", "cytokinesis, contractile ring assembly", "myosin...
[ "NARROW", "EXACT", "EXACT", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED" ]
[ "GO:0045573", "GO:2000708" ]
[]
[]
[ "GO:0000912", "GO:0044837" ]
[]
[]
[]
[ "GO:0000912", "GO:0044837" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0000916
916
actomyosin contractile ring contraction
biological_process
The process of an actomyosin ring getting smaller in diameter, in the context of cytokinesis that takes place as part of a cell cycle.
[ "GOC:clt", "GOC:dph", "GOC:mah", "GOC:tb" ]
null
[ "actomyosin contractile ring constriction", "contractile ring contraction involved in cell cycle cytokinesis", "cytokinesis, actomyosin ring contraction", "cytokinesis, contractile ring contraction" ]
[ "EXACT", "EXACT", "EXACT", "BROAD" ]
[]
[]
[]
[ "GO:0036213" ]
[ "part_of GO:0044837" ]
[ "part_of" ]
[ "GO:0044837" ]
[ "GO:0036213", "GO:0044837" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/21855\" xsd:anyURI" ]
null
null
false
true
6
GO:0000917
917
division septum assembly
biological_process
The assembly and arrangement of a septum that spans the plasma membrane interface between progeny cells following cytokinesis. The progeny cells that form a division septum are not able to exchange intracellular material.
[ "GOC:mtg_cell_cycle" ]
null
[ "division septum assembly involved in cell cycle cytokinesis", "division septum assembly involved in cell cycle cytokinesis involved in mitotic cell cycle", "division septum formation", "division septum formation involved in cell cycle cytokinesis", "division septum formation involved in cell cycle cytokine...
[ "NARROW", "NARROW", "EXACT", "NARROW", "NARROW", "NARROW", "EXACT", "NARROW", "NARROW", "BROAD", "RELATED", "NARROW", "RELATED", "NARROW" ]
[ "GO:0071937", "GO:1902411" ]
[]
[]
[ "GO:0090529" ]
[]
[]
[]
[ "GO:0090529" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000918
918
division septum site selection
biological_process
The process of marking the site where a division septum will form.
[ "GOC:clt" ]
null
[ "selection of site for barrier cell septum biosynthesis", "selection of site for barrier cell septum formation", "selection of site for division septum formation", "septin assembly and septum biosynthesis", "septin assembly and septum formation", "septum positioning" ]
[ "EXACT", "EXACT", "EXACT", "BROAD", "BROAD", "EXACT" ]
[]
[]
[]
[ "GO:0032506" ]
[ "part_of GO:0000917" ]
[ "part_of" ]
[ "GO:0000917" ]
[ "GO:0000917", "GO:0032506" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000920
920
septum digestion after cytokinesis
biological_process
The process of physically separating the septal cell wall material by enzymatic digestion, that occurs after daughter cells are separated by cytokinesis.
[ "GOC:mtg_cell_cycle", "GOC:vw" ]
This term should not be used to describe the last step of cytokinesis in organisms without a cell wall, ie, the cell resealing of the plasma membrane via abscission. Consider annotating to 'GO:0061952 midbody abscission' to capture this process.
[ "cell separation after cytokinesis", "cell separation following cytokinesis", "cytokinetic cell separation", "daughter cell separation", "mitotic cytokinetic cell separation" ]
[ "RELATED", "EXACT", "RELATED", "RELATED", "BROAD" ]
[ "GO:1902409", "GO:2000695" ]
[]
[]
[ "GO:0009987" ]
[ "part_of GO:0051301" ]
[ "part_of" ]
[ "GO:0051301" ]
[ "GO:0009987", "GO:0051301" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0000921
921
septin ring assembly
biological_process
The aggregation, arrangement and bonding together of septins and associated proteins to form an organized structure resembling a ring at the cell cortex.
[ "GOC:clt" ]
null
[ "septin assembly and septum biosynthesis", "septin assembly and septum formation" ]
[ "BROAD", "BROAD" ]
[]
[]
[]
[ "GO:0031106", "GO:0065003", "GO:0140694" ]
[]
[]
[]
[ "GO:0031106", "GO:0065003", "GO:0140694" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0000922
922
spindle pole
cellular_component
Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
[ "GOC:clt" ]
null
[]
[]
[ "GO:0030615" ]
[]
[]
[ "GO:0110165" ]
[ "part_of GO:0005819" ]
[ "part_of" ]
[ "GO:0005819" ]
[ "GO:0005819", "GO:0110165" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0000930
930
gamma-tubulin complex
cellular_component
A multiprotein complex composed of gamma-tubulin and other non-tubulin proteins. Gamma-tubulin complexes are localized to microtubule organizing centers, and play an important role in the nucleation of microtubules. The number and complexity of non-tubulin proteins associated with these complexes varies between species...
[ "GOC:clt", "PMID:12134075" ]
null
[]
[]
[]
[ "goslim_pir" ]
[]
[ "GO:0032991" ]
[ "part_of GO:0005815" ]
[ "part_of" ]
[ "GO:0005815" ]
[ "GO:0005815", "GO:0032991" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0000931
931
gamma-tubulin ring complex
cellular_component
A complex of gamma tubulin and associated proteins thought to be formed by multimerization of gamma-tubulin small complexes. An example of this structure is found in Schizosaccharomyces pombe.
[ "GOC:mtg_sensu", "PMID:12134075", "PMID:17021256" ]
null
[ "gamma-tubulin large complex", "gamma-tubulin large complex, centrosomal", "gamma-tubulin large complex, eMTOC", "gamma-tubulin large complex, equatorial microtubule organizing center", "gamma-tubulin large complex, equatorial microtubule organizing centre", "gamma-tubulin large complex, iMTOC", "gamma-...
[ "RELATED", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "EXACT" ]
[ "GO:0000924", "GO:0000925", "GO:0000926", "GO:0000929", "GO:0008274", "GO:0055031", "GO:0055032", "GO:0055033", "GO:0061494" ]
[]
[]
[ "GO:0000930" ]
[ "has_part GO:0008275" ]
[ "has_part" ]
[ "GO:0008275" ]
[ "GO:0000930", "GO:0008275" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20967\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23586\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23740\" xsd:anyURI" ]
null
null
false
true
1
GO:0000932
932
P-body
cellular_component
A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
[ "GOC:clt", "PMID:12730603" ]
null
[ "cytoplasmic foci", "cytoplasmic mRNA processing body", "P body" ]
[ "RELATED", "EXACT", "EXACT" ]
[]
[]
[ "Wikipedia:P_body" ]
[ "GO:0036464" ]
[]
[]
[]
[ "GO:0036464" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0000933
933
adventitious septum
cellular_component
A cell septum whose formation is independent of nuclear division.
[ "GOC:clt", "ISBN:0471940526" ]
null
[]
[]
[]
[]
[]
[ "GO:0030428" ]
[]
[]
[]
[ "GO:0030428" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0000934
934
porous cell septum
cellular_component
A septum or cross wall which does not entirely span the space between two portions of cell wall and may contain a specialized central pore structure. A porous septum allows the movement of organelles and/or cytoplasm between compartments.
[ "GOC:clt" ]
null
[ "porous septum" ]
[ "BROAD" ]
[]
[]
[]
[ "GO:0030428" ]
[]
[]
[]
[ "GO:0030428" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0000935
935
division septum
cellular_component
A cell septum which forms as part of the division site and functions in the compartmentalization of a cell into two daughter cells at division. A division septum spans a cell and does not allow exchange of organelles or cytoplasm between compartments.
[ "GOC:clt", "GOC:vw" ]
null
[ "cell septum surface", "complete septum", "septum surface" ]
[ "RELATED", "EXACT", "BROAD" ]
[ "GO:0043187" ]
[]
[]
[ "GO:0030428" ]
[ "part_of GO:0032153" ]
[ "part_of" ]
[ "GO:0032153" ]
[ "GO:0030428", "GO:0032153" ]
[ "GO:0030428", "part_of GO:0032153" ]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19434\" xsd:anyURI" ]
null
null
false
true
1
GO:0000936
936
primary cell septum
cellular_component
A cell septum that forms following nuclear division.
[ "GOC:clt", "ISBN:0471940526" ]
null
[ "primary septum" ]
[ "BROAD" ]
[]
[]
[]
[ "GO:0000935" ]
[]
[]
[]
[ "GO:0000935" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0000937
937
dolipore septum
cellular_component
A septum, or cross-wall, between two portions of a cell or hypha; contains a central pore around which the septum is swollen to form a barrel-shaped structure; pore is covered on each side of the septum by a septal pore cap (parenthosome).
[ "GOC:clt" ]
null
[]
[]
[]
[]
[]
[ "GO:0000934" ]
[]
[]
[]
[ "GO:0000934" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0000940
940
outer kinetochore
cellular_component
The region of a kinetochore most external to centromeric DNA; this outer region mediates kinetochore-microtubule interactions.
[ "GOC:clt", "PMID:11483983" ]
null
[ "condensed chromosome outer kinetochore", "condensed nuclear chromosome outer kinetochore", "outer kinetochore of condensed chromosome", "outer kinetochore of condensed nuclear chromosome", "outer kinetochore plate" ]
[ "EXACT", "EXACT", "EXACT", "EXACT", "NARROW" ]
[ "GO:0000942" ]
[]
[]
[ "GO:0032991" ]
[ "part_of GO:0000776" ]
[ "part_of" ]
[ "GO:0000776" ]
[ "GO:0000776", "GO:0032991" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/21126\" xsd:anyURI" ]
null
null
false
true
1
GO:0000943
943
retrotransposon nucleocapsid
cellular_component
A complex of the retrotransposon RNA genome, reverse transcriptase, integrase, and associated molecules required for reproduction and integration of the retrotransposon into the host genome; the main structural molecule of the nucleocapsid is often a gag protein homolog.
[ "GOC:clt", "PMID:10861903" ]
null
[ "Virus-like particle", "VLP" ]
[ "EXACT", "EXACT" ]
[]
[]
[ "Wikipedia:Virus-like_particle" ]
[ "GO:0110165" ]
[ "part_of GO:0005634" ]
[ "part_of" ]
[ "GO:0005634" ]
[ "GO:0005634", "GO:0110165" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0000948
948
amino acid catabolic process to carboxylic acid via Ehrlich pathway
biological_process
The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. Often referred to as the Ehrlich pathwa...
[ "GOC:krc", "PMID:18281432" ]
null
[]
[]
[]
[]
[]
[ "GO:0000955", "GO:0046394" ]
[]
[]
[]
[ "GO:0000955", "GO:0046394" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0000949
949
aromatic amino acid family catabolic process to alcohol via Ehrlich pathway
biological_process
The chemical reactions and pathways involving the catabolism of aromatic amino acids to produce aromatic alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When an aromatic family amino...
[ "GOC:krc", "PMID:18281432" ]
null
[]
[]
[]
[]
[]
[ "GO:0000947", "GO:0009074" ]
[]
[]
[]
[ "GO:0000947", "GO:0009074" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000950
950
branched-chain amino acid catabolic process to alcohol via Ehrlich pathway
biological_process
The chemical reactions and pathways involving the catabolism of branched chain amino acids to produce branched chain alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When a branched c...
[ "GOC:krc", "PMID:18281432" ]
null
[ "branched chain family amino acid catabolic process to alcohol via Ehrlich pathway" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0000947", "GO:0009083" ]
[]
[]
[]
[ "GO:0000947", "GO:0009083" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0000951
951
obsolete L-methionine catabolic process to 3-methylthiopropanol
biological_process
OBSOLETE. The chemical reactions and pathways involving the catabolism of branched chain amino acids to produce branched chain alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When L-...
[ "GOC:krc", "PMID:18281432" ]
This term was obsoleted because it represents a specific instance of a pathway that should be captured as a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0009087" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30202\" xsd:anyURI" ]
null
null
true
true
4
GO:0000952
952
aromatic amino acid family catabolic process to carboxylic acid via Ehrlich pathway
biological_process
The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When an aromatic family amino acid, phe...
[ "GOC:krc", "PMID:18281432" ]
null
[]
[]
[]
[]
[]
[ "GO:0000948", "GO:0009074" ]
[]
[]
[]
[ "GO:0000948", "GO:0009074" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
6
GO:0000953
953
branched-chain amino acid catabolic process to carboxylic acid via Ehrlich pathway
biological_process
The chemical reactions and pathways involving the catabolism of amino acids to produce carboxylic acids with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. When a branched chain family amino acid...
[ "GOC:krc", "PMID:18281432" ]
null
[ "branched chain family amino acid catabolic process to carboxylic acid via Ehrlich pathway" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0000948", "GO:0009083" ]
[]
[]
[]
[ "GO:0000948", "GO:0009083" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000955
955
amino acid catabolic process via Ehrlich pathway
biological_process
The chemical reactions and pathways involving the catabolism of amino acids to produce alcohols or carboxylic acids containing one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. Often referred to as ...
[ "GOC:krc", "PMID:18281432" ]
null
[]
[]
[]
[]
[]
[ "GO:0009063" ]
[]
[]
[]
[ "GO:0009063" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0000956
956
nuclear-transcribed mRNA catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells.
[ "GOC:krc" ]
null
[ "nuclear mRNA breakdown", "nuclear mRNA catabolism", "nuclear mRNA degradation" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006402" ]
[]
[]
[]
[ "GO:0006402" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0000957
957
mitochondrial RNA catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of RNA transcribed from the mitochondrial genome and occurring in the mitochondrion.
[ "GOC:krc", "GOC:mah" ]
null
[]
[]
[]
[]
[ "Reactome:R-HSA-9836573 \"Mitochondrial RNA degradation\"" ]
[ "GO:0000959", "GO:0006401" ]
[]
[]
[]
[ "GO:0000959", "GO:0006401" ]
[ "GO:0006401", "occurs_in GO:0005739" ]
[]
[]
[]
[]
[]
null
null
false
true
7
GO:0000958
958
mitochondrial mRNA catabolic process
biological_process
The chemical reactions and pathways resulting in the breakdown of mRNA transcribed from the mitochondrial genome and occurring in the mitochondrion.
[ "GOC:krc", "GOC:mah" ]
null
[]
[]
[]
[]
[]
[ "GO:0000957", "GO:0006402" ]
[]
[]
[]
[ "GO:0000957", "GO:0006402" ]
[ "GO:0006402", "occurs_in GO:0005739" ]
[]
[]
[]
[]
[]
null
null
false
true
8
GO:0000959
959
mitochondrial RNA metabolic process
biological_process
The chemical reactions and pathways involving RNA transcribed from the mitochondrial genome and occurring in the mitochondrion.
[ "GOC:krc", "GOC:mah" ]
null
[]
[]
[]
[]
[]
[ "GO:0016070" ]
[ "occurs_in GO:0005739" ]
[ "occurs_in" ]
[ "GO:0005739" ]
[ "GO:0005739", "GO:0016070" ]
[ "GO:0016070", "occurs_in GO:0005739" ]
[]
[]
[]
[]
[]
null
null
false
true
3
GO:0000961
961
negative regulation of mitochondrial RNA catabolic process
biological_process
Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving catabolism in the mitochondrion of RNA transcribed from the mitochondrial genome.
[ "GOC:krc", "GOC:mah" ]
null
[]
[]
[]
[]
[]
[ "GO:0000960", "GO:1902369" ]
[ "negatively_regulates GO:0000957" ]
[ "negatively_regulates" ]
[ "GO:0000957" ]
[ "GO:0000957", "GO:0000960", "GO:1902369" ]
[ "GO:0065007", "negatively_regulates GO:0000957" ]
[]
[]
[]
[]
[]
null
null
false
true
2
GO:0000962
962
positive regulation of mitochondrial RNA catabolic process
biological_process
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving catabolism in the mitochondrion of RNA transcribed from the mitochondrial genome.
[ "GOC:krc", "GOC:mah" ]
null
[]
[]
[]
[]
[]
[ "GO:0000960", "GO:0009896", "GO:0051254" ]
[ "positively_regulates GO:0000957" ]
[ "positively_regulates" ]
[ "GO:0000957" ]
[ "GO:0000957", "GO:0000960", "GO:0009896", "GO:0051254" ]
[ "GO:0065007", "positively_regulates GO:0000957" ]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0000963
963
mitochondrial RNA processing
biological_process
The conversion of a primary RNA molecule transcribed from a mitochondrial genome into one or more mature RNA molecules; occurs in the mitochondrion.
[ "GOC:krc", "GOC:mah" ]
null
[]
[]
[]
[]
[]
[ "GO:0006396", "GO:0140053" ]
[ "part_of GO:0000959" ]
[ "part_of" ]
[ "GO:0000959" ]
[ "GO:0000959", "GO:0006396", "GO:0140053" ]
[ "GO:0006396", "occurs_in GO:0005739" ]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/30320\" xsd:anyURI" ]
null
null
false
true
8
GO:0000964
964
mitochondrial RNA 5'-end processing
biological_process
Any process involved in forming the mature 5' end of an RNA molecule transcribed from a mitochondrial genome; occurs in the mitochondrion.
[ "GOC:krc", "GOC:mah" ]
null
[ "mitochondrial RNA 5' end processing" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0000963", "GO:0000966" ]
[]
[]
[]
[ "GO:0000963", "GO:0000966" ]
[ "GO:0000966", "occurs_in GO:0005739" ]
[]
[]
[]
[]
[]
null
null
false
true
9
GO:0000965
965
mitochondrial RNA 3'-end processing
biological_process
Any process involved in forming the mature 3' end of an RNA molecule transcribed from a mitochondrial genome; occurs in the mitochondrion.
[ "GOC:krc", "GOC:mah" ]
null
[ "mitochondrial RNA 3' end processing" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0000963", "GO:0031123" ]
[]
[]
[]
[ "GO:0000963", "GO:0031123" ]
[ "GO:0031123", "occurs_in GO:0005739" ]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0000967
967
rRNA 5'-end processing
biological_process
Any process involved in forming the mature 5' end of an rRNA molecule.
[ "GOC:krc" ]
null
[ "rRNA 5' end processing" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0000966", "GO:0006364" ]
[]
[]
[]
[ "GO:0000966", "GO:0006364" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
1
GO:0000968
968
tRNA exon ligation
biological_process
An RNA exon ligation process that rejoins two exons of a pre-tRNA which has had the intron removed.
[ "GOC:krc" ]
null
[]
[]
[]
[]
[]
[ "GO:0000378" ]
[ "part_of GO:0006388" ]
[ "part_of" ]
[ "GO:0006388" ]
[ "GO:0000378", "GO:0006388" ]
[]
[]
[]
[]
[]
[]
krc
2009-04-28T10:22:40Z
false
true
2
GO:0000970
970
obsolete tRNA exon ligation utilizing GTP as source of linkage phosphate
biological_process
OBSOLETE. A tRNA exon ligation process in which the splice junction phosphate is derived from exogenous GTP. This type of ligation to rejoin the 5' and 3' exons of a tRNA is observed in the yeast Saccharomyces cerevisiae where the ligation reaction also produces a 2'-phosphate at the splice junction which is subsequent...
[ "GOC:krc", "PMID:18217203", "PMID:9299409" ]
The reason for obsoletion is that this term is a molecular function
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000968" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27438\" xsd:anyURI" ]
krc
2009-04-28T10:33:25Z
true
true
3
GO:0000971
971
obsolete tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate
biological_process
OBSOLETE. A tRNA exon ligation process in which the splice junction phosphate is derived from the 2',3' cyclic phosphate at the 3'-end of the 5'-exon. This type of ligation to rejoin the 5' and 3' exons of a tRNA is observed in wheat, Chlamydomonas, and vertebrate species including humans.
[ "GOC:krc", "PMID:17786051", "PMID:18217203", "PMID:9299409" ]
The reason for obsoletion is that this term is a molecular function.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000968" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/27438\" xsd:anyURI" ]
krc
2009-04-28T10:36:17Z
true
true
3
GO:0000972
972
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
biological_process
The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery. In S. cerevisiae, this process involves cis-acting DNA sequences such as the TATA box and upstream activating sequence (UAS) elements, trans-act...
[ "GOC:krc", "PMID:18614049" ]
null
[]
[]
[]
[]
[]
[ "GO:0051276" ]
[]
[]
[]
[ "GO:0051276" ]
[]
[]
[]
[]
[]
[]
krc
2009-09-10T12:25:11Z
false
true
1
GO:0000973
973
post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery
biological_process
The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery even after transcription has been repressed.
[ "GOC:krc", "PMID:17373856", "PMID:18614049" ]
null
[ "posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0000972" ]
[]
[]
[]
[ "GO:0000972" ]
[]
[]
[]
[]
[]
[]
krc
2009-09-10T12:28:04Z
false
true
2
GO:0000974
974
Prp19 complex
cellular_component
A protein complex consisting of Prp19 and associated proteins that is involved in the transition from the precatalytic spliceosome to the activated form that catalyzes step 1 of splicing, and which remains associated with the spliceosome through the second catalytic step. It is widely conserved, found in both yeast and...
[ "GOC:krc", "PMID:16540691", "PMID:19239890" ]
null
[ "MOS4-Associated Complex", "nineteen complex", "NTC", "Prp19/CDC5 complex" ]
[ "NARROW", "NARROW", "RELATED", "NARROW" ]
[]
[]
[]
[ "GO:0032991" ]
[]
[]
[]
[ "GO:0032991" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/26661\" xsd:anyURI" ]
krc
2009-10-12T10:01:30Z
false
true
4
GO:0000976
976
transcription cis-regulatory region binding
molecular_function
Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
[ "GOC:txnOH" ]
Note that this term is meant to also capture non-specific binding to regulatory regions. Also, to minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may ...
[ "bacterial-type RNA polymerase regulatory region DNA binding", "bacterial-type RNA polymerase transcription regulatory region sequence-specific DNA binding", "eubacterial-type RNA polymerase regulatory region DNA binding", "eubacterial-type RNA polymerase regulatory region sequence-specific DNA binding", "r...
[ "NARROW", "NARROW", "NARROW", "NARROW", "BROAD", "RELATED", "EXACT" ]
[ "GO:0000975", "GO:0000984", "GO:0001017", "GO:0044212" ]
[]
[]
[ "GO:0001067", "GO:1990837" ]
[]
[]
[]
[ "GO:0001067", "GO:1990837" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19312\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20791\" xsd:anyURI" ]
krc
2010-08-10T02:58:18Z
false
true
8
GO:0000977
977
RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function
Binding to a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
[ "GOC:txnOH" ]
To minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter p...
[ "RNA polymerase II regulatory region DNA binding" ]
[ "RELATED" ]
[ "GO:0001012" ]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19312\" xsd:anyURI" ]
krc
2010-08-10T11:05:36Z
false
true
5
GO:0000978
978
RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function
Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase II.
[ "GOC:txnOH-2018" ]
Note that the phrase "upstream activating sequence", or UAS is often used in S. cerevisiae literature to refer to cis-regulatory sequences. In bacteria such as E. coli, the phrase "upstream activating sequence", or UAS is usually a synonym for "enhancer".
[ "RNA polymerase II core promoter proximal region sequence-specific DNA binding", "RNA polymerase II distal enhancer sequence-specific DNA binding", "RNA polymerase II promoter proximal region sequence-specific DNA binding", "RNA polymerase II proximal promoter sequence-specific DNA binding", "RNA polymerase...
[ "RELATED", "RELATED", "RELATED", "RELATED", "RELATED" ]
[ "GO:0000980" ]
[]
[ "Reactome:R-HSA-400204 \"PPARA binds RXRA\"" ]
[ "GO:0000977", "GO:0000987" ]
[]
[]
[]
[ "GO:0000977", "GO:0000987" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-10T02:17:19Z
false
true
4
GO:0000979
979
RNA polymerase II core promoter sequence-specific DNA binding
molecular_function
Binding to a DNA sequence that is part of the core promoter of a RNA polymerase II-transcribed gene.
[ "GOC:pg", "GOC:txnOH", "PMID:12381658" ]
null
[]
[]
[]
[]
[]
[ "GO:0000977", "GO:0001046" ]
[]
[]
[]
[ "GO:0000977", "GO:0001046" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-10T02:17:28Z
false
true
6
GO:0000981
981
DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function
A DNA-binding transcription factor activity that modulates the transcription of specific gene sets transcribed by RNA polymerase II.
[ "GOC:txnOH-2018" ]
For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.
[ "copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity", "metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity", "metal ion regulated sequence-specific DNA bindin...
[ "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "EXACT", "EXACT", "NARROW", "NARROW", "NARROW", "EXACT", "RELATED", "BROAD", "NARROW", "NARROW", "NARROW", "NARROW" ]
[ "GO:0000982", "GO:0001133", "GO:0001200", "GO:0001201", "GO:0001202", "GO:0001203", "GO:0003705" ]
[]
[]
[ "GO:0003700" ]
[ "has_part GO:0000977", "occurs_in GO:0000785", "part_of GO:0006357" ]
[ "has_part", "occurs_in", "part_of" ]
[ "GO:0000977", "GO:0000785", "GO:0006357" ]
[ "GO:0000785", "GO:0000977", "GO:0003700", "GO:0006357" ]
[ "GO:0140110", "has_part GO:0000977", "part_of GO:0006357" ]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/15530\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16131\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16152\" xsd:anyURI" ]
krc
2010-08-10T02:37:21Z
false
true
9
GO:0000987
987
cis-regulatory region sequence-specific DNA binding
molecular_function
Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site, located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by some RNA polymerase. Cis-regulatory sites are often referred to as a sequence motifs, enha...
[ "GOC:txnOH-2018" ]
null
[ "bacterial-type cis-regulatory region sequence-specific DNA binding", "bacterial-type proximal promoter sequence-specific DNA binding", "bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding", "bacterial-type RNA polymerase enhancer sequence-specific DNA binding", "bacter...
[ "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "RELATED", "NARROW", "NARROW", "RELATED", "RELATED", "NARROW", "NARROW", "NARROW" ]
[ "GO:0000986", "GO:0001150", "GO:0001158", "GO:0001159", "GO:0035326" ]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[]
[]
[]
bf
2010-02-26T10:17:00Z
false
true
9
GO:0000988
988
obsolete transcription factor activity, protein binding
molecular_function
OBSOLETE. Binding to a protein or protein complex, to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
[ "GOC:txnOH" ]
The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent.
[ "protein binding transcription factor activity", "transcription factor activity" ]
[ "EXACT", "BROAD" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0005515", "GO:0140110" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16053\" xsd:anyURI" ]
krc
2010-08-10T04:03:22Z
true
true
1
GO:0000989
989
obsolete transcription factor activity, transcription factor binding
molecular_function
OBSOLETE. Binding to a specific transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
[ "GOC:txnOH" ]
The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent.
[ "transcription factor binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0008134", "GO:0140110" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16053\" xsd:anyURI" ]
krc
2010-08-10T04:57:43Z
true
true
7
GO:0000990
990
obsolete transcription factor activity, core RNA polymerase binding
molecular_function
OBSOLETE. Binding to an RNA polymerase in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
[ "GOC:txnOH" ]
The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent.
[ "core RNA polymerase binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0043175", "GO:0140110" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16053\" xsd:anyURI" ]
krc
2010-08-10T05:01:03Z
true
true
1
GO:0000991
991
obsolete transcription factor activity, core RNA polymerase II binding
molecular_function
OBSOLETE. Binding to an RNA polymerase II (Pol II) complex, typically composed of twelve subunits, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
[ "GOC:txnOH" ]
The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent.
[ "core RNA polymerase II binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000993", "GO:0140110" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16053\" xsd:anyURI" ]
krc
2010-08-10T05:03:45Z
true
true
6
GO:0000992
992
RNA polymerase III cis-regulatory region sequence-specific DNA binding
molecular_function
Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase III. The transcribed region might be contain a single gene or a cistron con...
[ "GOC:txnOH", "PMID:12381659" ]
null
[]
[]
[]
[]
[]
[ "GO:0000987", "GO:0001016" ]
[]
[]
[]
[ "GO:0000987", "GO:0001016" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-11T03:49:28Z
false
true
9
GO:0000993
993
RNA polymerase II complex binding
molecular_function
Binding to an RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits.
[ "GOC:txnOH" ]
null
[ "RNA polymerase II core binding", "RNAP II core binding" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0043175" ]
[]
[]
[]
[ "GO:0043175" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-11T03:57:27Z
false
true
4
GO:0000994
994
RNA polymerase III core binding
molecular_function
Binding to an RNA polymerase III core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of seventeen subunits.
[ "GOC:txnOH" ]
null
[]
[]
[]
[]
[]
[ "GO:0043175" ]
[]
[]
[]
[ "GO:0043175" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-11T03:58:58Z
false
true
3
GO:0000995
995
RNA polymerase III general transcription initiation factor activity
molecular_function
A general transcription initiation factor activity that contributes to transcription start site selection and transcription initiation of genes transcribed by RNA polymerase III. Factors required for RNA polymerase III transcription initiation include TFIIIA, TFIIIB and TFIIIC. RNA polymerase III transcribes genes enco...
[ "GOC:txnOH-2018", "PMID:12381659", "PMID:17977614", "PMID:20413673", "PMID:27068803", "PMID:40762516", "Wikipedia:RNA_polymerase_III" ]
null
[ "core RNA polymerase III binding transcription factor activity", "RNA polymerase III general initiation factor activity", "RNA polymerase III transcription factor activity, sequence-specific DNA binding", "sequence-specific DNA binding RNA polymerase III transcription factor activity", "transcription factor...
[ "NARROW", "EXACT", "NARROW", "NARROW", "NARROW" ]
[ "GO:0001034" ]
[]
[]
[ "GO:0140223" ]
[ "part_of GO:0006383" ]
[ "part_of" ]
[ "GO:0006383" ]
[ "GO:0006383", "GO:0140223" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/15789\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/15862\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20253\" xsd:anyURI", "term_tracker_item \"https://gi...
krc
2010-08-23T03:41:48Z
false
true
1
GO:0001000
1,000
bacterial-type RNA polymerase core enzyme binding
molecular_function
Binding to a bacterial-type RNA polymerase core enzyme, typically consisting of two alpha, one beta, one beta prime, and one omega subunit.
[ "GOC:txnOH" ]
Should omega be included here?
[ "eubacterial-type RNA polymerase core enzyme binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0043175" ]
[]
[]
[]
[ "GO:0043175" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-17T04:59:00Z
false
true
9
GO:0001001
1,001
mitochondrial single-subunit type RNA polymerase binding
molecular_function
Binding to a single subunit mitochondrial RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6.
[ "GOC:txnOH", "PMID:20701995", "PMID:2088182" ]
null
[]
[]
[]
[]
[]
[ "GO:0001050" ]
[]
[]
[]
[ "GO:0001050" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-17T05:01:28Z
false
true
5
GO:0001002
1,002
RNA polymerase III type 1 promoter sequence-specific DNA binding
molecular_function
Binding to a sequence of DNA that is a part of a type 1 promoter that controls transcription by RNA polymerase III. Type 1 promoters are found in 5S rRNA genes, downstream of the transcription start site within the sequence of the mature RNA, and require TFIIIA for recognition.
[ "GOC:txnOH", "PMID:12381659" ]
null
[ "RNA polymerase III type 1 promoter DNA binding" ]
[ "RELATED" ]
[ "GO:0001030" ]
[]
[]
[ "GO:0000992", "GO:0080084" ]
[]
[]
[]
[ "GO:0000992", "GO:0080084" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-18T05:38:20Z
false
true
1
GO:0001003
1,003
RNA polymerase III type 2 promoter sequence-specific DNA binding
molecular_function
Binding to a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well...
[ "GOC:txnOH", "PMID:12381659" ]
null
[ "RNA polymerase III type 2 promoter DNA binding" ]
[ "RELATED" ]
[ "GO:0001031" ]
[]
[]
[ "GO:0000992" ]
[]
[]
[]
[ "GO:0000992" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-18T05:51:18Z
false
true
4
GO:0001004
1,004
obsolete RNA polymerase III transcription regulator recruiting activity
molecular_function
OBSOLETE. Initiating the assembly of the RNA polymerase III pre-initiation complex by binding to a control sequence in the intragenic region. This allows to recruit TFIIIB to the DNA at a site centered approximately 26 base pairs upstream of the start site of transcription. For tRNA genes, TFIIIC first associates with ...
[ "GOC:txnOH-2018", "PMID:12381659", "PMID:23063749", "PMID:27911719", "Wikipedia:RNA_polymerase_III" ]
The reason for obsoletion is that this function is redundant with other terms, most often 'transcription co-regulator activity; GO:0003712'.
[ "RNA polymerase III assembly factor activity", "RNA polymerase III assembly factor activity, TFIIIB recruiting", "RNA polymerase III hybrid type promoter TFIIIB recruiting transcription factor activity", "RNA polymerase III promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity...
[ "RELATED", "RELATED", "NARROW", "NARROW", "EXACT", "NARROW", "NARROW", "NARROW", "RELATED", "RELATED", "RELATED", "EXACT", "NARROW", "RELATED", "NARROW", "NARROW", "NARROW", "NARROW" ]
[ "GO:0001005", "GO:0001008", "GO:0001033", "GO:0001038", "GO:0001157" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/14852\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/18561\" xsd:anyURI" ]
krc
2010-08-18T05:53:32Z
true
true
6
GO:0001006
1,006
RNA polymerase III type 3 promoter sequence-specific DNA binding
molecular_function
Binding to a sequence of DNA that is a part of a type 3 promoter that controls transcription by RNA polymerase III (Pol III). A type 3 Pol III promoter is composed of elements upstream of the transcription start site, including a TATA box. The human U6 snRNA gene has a type 3 promoter. Type 3 Pol III promoters have not...
[ "GOC:txnOH", "PMID:12381659" ]
null
[ "RNA polymerase III type 3 promoter DNA binding" ]
[ "RELATED" ]
[ "GO:0001032" ]
[]
[]
[ "GO:0000992" ]
[]
[]
[]
[ "GO:0000992" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-18T06:02:26Z
false
true
9
GO:0001010
1,010
obsolete RNA polymerase II sequence-specific DNA-binding transcription factor recruiting activity
molecular_function
OBSOLETE. The function of binding to a specific DNA sequence and recruiting another transcription factor to the DNA in order to modulate transcription. The recruited factor may bind DNA directly, or may be colocalized via protein-protein interactions.
[ "GOC:txnOH" ]
This term was obsoleted because it was not clearly defined.
[ "sequence-specific DNA binding transcription factor recruiting transcription factor activity", "transcription factor activity, sequence-specific DNA binding transcription factor recruiting", "transcription factor activity, sequence-specific DNA-binding transcription factor recruiting" ]
[ "EXACT", "EXACT", "RELATED" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003712", "GO:0140463" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31456\" xsd:anyURI" ]
krc
2010-08-18T06:46:33Z
true
true
4
GO:0001011
1,011
obsolete transcription factor activity, sequence-specific DNA binding, RNA polymerase recruiting
molecular_function
OBSOLETE. Binding to a specific DNA sequence and recruiting RNA polymerase to the DNA in order to form the preinitiation complex (PIC).
[ "GOC:txnOH" ]
This term was obsoleted because it was not clearly defined and usage has been inconsistent.
[ "sequence-specific DNA binding RNA polymerase recruiting transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0140223" ]
[]
krc
2010-08-18T06:49:16Z
true
true
8
GO:0001014
1,014
snoRNA transcription by RNA polymerase III
biological_process
The synthesis of small nucleolar RNA (snoRNA) from a DNA template by RNA polymerase III, originating at a type 2 RNA polymerase III promoter.
[ "GOC:txnOH" ]
null
[ "snoRNA transcription from a type 2 RNA polymerase III promoter" ]
[ "NARROW" ]
[]
[]
[]
[ "GO:0006383", "GO:0009302" ]
[]
[]
[]
[ "GO:0006383", "GO:0009302" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-18T07:13:45Z
false
true
1
GO:0001015
1,015
snoRNA transcription by RNA polymerase II
biological_process
The synthesis of small nucleolar RNA (snoRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.
[ "GOC:txnOH" ]
null
[ "snoRNA transcription from an RNA polymerase II promoter" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0006366", "GO:0009302" ]
[]
[]
[]
[ "GO:0006366", "GO:0009302" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/14854\" xsd:anyURI" ]
krc
2010-08-18T07:21:18Z
false
true
5
GO:0001016
1,016
RNA polymerase III transcription regulatory region sequence-specific DNA binding
molecular_function
Binding to a DNA region that controls the transcription of a gene by RNA polymerase III. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
[ "GOC:txnOH", "GOC:vw", "PMID:12381659" ]
null
[ "RNA polymerase III regulatory region DNA binding" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-19T09:36:17Z
false
true
8
GO:0001018
1,018
mitochondrial promoter sequence-specific DNA binding
molecular_function
Binding to a DNA region that controls the transcription of the mitochondrial DNA.
[ "GOC:txnOH", "GOC:vw", "PMID:20056105" ]
null
[ "HSP coding strand binding", "HSP non-coding strand binding", "HSPas binding", "HSPs binding", "LSP coding strand binding", "LSP non-coding strand binding", "LSPas binding", "LSPs binding", "mitochondrial heavy strand promoter anti-sense binding", "mitochondrial heavy strand promoter sense binding...
[ "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "NARROW", "RELATED", "RELATED", "RELATED", "RELATED", "RELATED" ]
[ "GO:0000997", "GO:0001044", "GO:0001045", "GO:0070361", "GO:0070362", "GO:0070363", "GO:0070364" ]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-25T04:11:49Z
false
true
9
GO:0001019
1,019
plastid promoter transcription regulatory region sequence-specific DNA binding
molecular_function
Binding to a DNA region that controls transcription by a plastid RNA polymerase. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
[ "GOC:txnOH", "GOC:vw" ]
plastid promoter regulatory region sequence-specific DNA binding
[]
[]
[]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-19T09:46:27Z
false
true
2
GO:0001025
1,025
RNA polymerase III general transcription initiation factor binding
molecular_function
Binding to an RNA polymerase III transcription factor, a protein required to initiate or regulate transcription by RNA polymerase III.
[ "GOC:txnOH" ]
null
[ "RNA polymerase III transcription factor binding" ]
[ "BROAD" ]
[]
[]
[]
[ "GO:0140296" ]
[]
[]
[]
[ "GO:0140296" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-20T03:26:50Z
false
true
3
GO:0001026
1,026
obsolete TFIIIB-type transcription factor activity
molecular_function
OBSOLETE. Binding to an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way, Once recruited to an RNA polymerase III promoter by one or more other transcription factors, binds to ...
[ "GOC:txnOH" ]
This term was obsoleted because it represents a gene product.
[ "RNA polymerase III recruiting transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
krc
2010-08-23T12:24:31Z
true
true
2
GO:0001027
1,027
obsolete RNA polymerase III type 1 promoter TFIIIB-type transcription factor activity
molecular_function
OBSOLETE. Binding to an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III type 1 promoter by TFIIIA-type and TFIIIC-type factors, binds ...
[ "GOC:txnOH-2018", "PMID:12381659" ]
The reason for obsoletion is that there is a single TFIIIB activity; this is not dependent on the promoter.
[ "RNA polymerase III type 1 promoter polymerase recruiting transcription factor activity" ]
[ "RELATED" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
krc
2010-08-23T12:50:20Z
true
true
5
GO:0001028
1,028
obsolete RNA polymerase III type 2 promoter TFIIIB-type transcription factor activity
molecular_function
OBSOLETE. Binding to an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III type 2 promoter by a TFIIIC-type factor, binds to DNA, recruit...
[ "GOC:txnOH-2018", "PMID:12381659" ]
The reason for obsoletion is that there is a single TFIIIB activity; this is not dependent on the promoter.
[ "RNA polymerase III type 2 promoter polymerase recruiting transcription factor activity" ]
[ "RELATED" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
krc
2010-08-23T12:52:01Z
true
true
7