Datasets:
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GO

Dataset card Data Studio Files
xet
 Community
go_id
string
go_numeric_id
int64
name
string
namespace
string
definition
string
definition_xrefs
list
comment
string
synonyms
list
synonym_scopes
list
alt_ids
list
subsets
list
xrefs
list
is_a_ids
list
relationship_edges
list
relationship_types
list
relationship_target_ids
list
parent_ids
list
intersection_of
list
union_of
list
disjoint_from
list
replaced_by
list
consider
list
property_values
list
created_by
string
creation_date
string
is_obsolete
bool
in_go_basic
bool
split_bucket
int64
GO:0001029
1,029
obsolete RNA polymerase III type 3 promoter TFIIIB-type transcription factor activity
molecular_function
OBSOLETE. Binding to an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III type 3 promoter by SNAP-type and TFIIIC-type factors, binds to...
[ "GOC:txnOH-2018", "PMID:12381659" ]
null
[ "RNA polymerase III type 3 promoter polymerase recruiting transcription factor activity" ]
[ "RELATED" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
krc
2010-08-23T12:52:40Z
true
true
4
GO:0001039
1,039
RNA polymerase III hybrid type promoter sequence-specific DNA binding
molecular_function
Binding to a sequence of DNA that is a part of a hybrid type promoter that controls transcription by RNA polymerase III (Pol III). A hybrid Pol III promoter contains both regulatory elements both upstream and downstream of the transcription initiation site. An example gene with such a promoter is the S. cerevisiae U6 g...
[ "GOC:txnOH", "PMID:12381659" ]
null
[ "RNA polymerase III hybrid type promoter DNA binding" ]
[ "RELATED" ]
[ "GO:0001037" ]
[]
[]
[ "GO:0000992" ]
[]
[]
[]
[ "GO:0000992" ]
[]
[]
[]
[]
[]
[]
krc
2010-08-23T06:21:24Z
false
true
7
GO:0001040
1,040
obsolete RNA polymerase III hybrid type promoter TFIIIB-type transcription factor activity
molecular_function
OBSOLETE. Binding to an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III hybrid type promoter, binds to DNA, recruits RNA polymerase II...
[ "GOC:txnOH-2018", "PMID:12381659" ]
The reason for obsoletion is that there is a single TFIIIB activity; this is not dependent on the promoter.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
krc
2010-08-23T06:28:23Z
true
true
7
GO:0001042
1,042
RNA polymerase I core binding
molecular_function
Binding to a RNA polymerase I core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of seventeen subunits.
[ "GOC:txnOH" ]
null
[]
[]
[]
[]
[]
[ "GO:0043175" ]
[]
[]
[]
[ "GO:0043175" ]
[]
[]
[]
[]
[]
[]
krc
2010-09-23T01:39:23Z
false
true
5
GO:0001046
1,046
core promoter sequence-specific DNA binding
molecular_function
Binding to a sequence of DNA that is part of a core promoter region. The core promoter is composed of the transcription start site and binding sites for the RNA polymerase and the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon.
[ "GOC:pg", "GOC:txnOH" ]
null
[ "bacterial-type RNA polymerase core promoter sequence-specific DNA binding", "core promoter binding", "eubacterial-type RNA polymerase core promoter sequence-specific DNA binding" ]
[ "NARROW", "RELATED", "NARROW" ]
[ "GO:0000985", "GO:0001047" ]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19312\" xsd:anyURI" ]
krc
2010-08-25T04:17:44Z
false
true
7
GO:0001048
1,048
RNA polymerase IV core binding
molecular_function
Binding to RNA polymerase IV core enzyme, a multisubunit eukaryotic nuclear RNA polymerase found in plants and involved in siRNA production.
[ "GOC:txnOH", "PMID:19110459" ]
null
[]
[]
[]
[]
[]
[ "GO:0043175" ]
[]
[]
[]
[ "GO:0043175" ]
[]
[]
[]
[]
[]
[]
krc
2010-09-23T01:41:03Z
false
true
2
GO:0001049
1,049
RNA polymerase V core binding
molecular_function
Binding to RNA polymerase V core enzyme, a multisubunit eukaryotic nuclear RNA polymerase found in plants and involved in production of noncoding transcripts at target loci for silencing.
[ "GOC:txnOH", "PMID:19110459" ]
null
[]
[]
[]
[]
[]
[ "GO:0043175" ]
[]
[]
[]
[ "GO:0043175" ]
[]
[]
[]
[]
[]
[]
krc
2010-09-23T01:41:08Z
false
true
4
GO:0001050
1,050
single-subunit type RNA polymerase binding
molecular_function
Binding to a single subunit RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6.
[ "GOC:txnOH", "PMID:20701995" ]
null
[ "SP6-type RNA polymerase binding", "T3-type RNA polymerase binding", "T3/T7 type RNA polymerase binding", "T7-type RNA polymerase binding" ]
[ "EXACT", "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0070063" ]
[]
[]
[]
[ "GO:0070063" ]
[]
[]
[]
[]
[]
[]
krc
2010-09-23T02:33:45Z
false
true
9
GO:0001051
1,051
plastid single-subunit type RNA polymerase binding
molecular_function
Binding to a single subunit plastid RNA polymerase enzyme, which is composed of a single catalytic subunit similar to the RNA polymerase enzymes from phages T3, T7, and SP6.
[ "GOC:txnOH", "PMID:20701995" ]
null
[]
[]
[]
[]
[]
[ "GO:0001050" ]
[]
[]
[]
[ "GO:0001050" ]
[]
[]
[]
[]
[]
[]
krc
2010-09-23T02:42:57Z
false
true
4
GO:0001052
1,052
plastid PEP RNA polymerase core enzyme binding
molecular_function
Binding to a bacterial-type plastid PEP RNA polymerase core enzyme, typically consisting of two alpha, one beta, one beta prime, and one double prime subunit.
[ "GOC:txnOH", "PMID:20701995" ]
null
[]
[]
[]
[]
[]
[ "GO:0001000" ]
[]
[]
[]
[ "GO:0001000" ]
[]
[]
[]
[]
[]
[]
krc
2010-09-23T02:49:31Z
false
true
1
GO:0001054
1,054
obsolete RNA polymerase I activity
molecular_function
OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase I specific promoter to direct initiation and catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain ...
[ "GOC:txnOH" ]
The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity.
[ "DNA-directed RNA polymerase activity involved in transcription from RNA polymerase I promoter" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003899" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23779\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28520\" xsd:anyURI" ]
krc
2010-09-23T03:36:11Z
true
true
5
GO:0001055
1,055
obsolete RNA polymerase II activity
molecular_function
OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain...
[ "GOC:txnOH" ]
The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity.
[ "DNA-directed RNA polymerase activity involved in transcription from RNA polymerase II promoter" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003899" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23779\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28520\" xsd:anyURI" ]
krc
2010-09-23T03:44:23Z
true
true
6
GO:0001056
1,056
obsolete RNA polymerase III activity
molecular_function
OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase III specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chai...
[ "GOC:txnOH" ]
The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity.
[ "DNA-directed RNA polymerase activity involved in transcription from RNA polymerase III promoter" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003899" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23779\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28520\" xsd:anyURI" ]
krc
2010-09-23T03:44:47Z
true
true
6
GO:0001057
1,057
obsolete RNA polymerase IV activity
molecular_function
OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase IV specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain...
[ "GOC:txnOH" ]
The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity.
[ "DNA-directed RNA polymerase activity involved in transcription from RNA polymerase IV promoter" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003899" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23779\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28520\" xsd:anyURI" ]
krc
2010-09-23T03:44:55Z
true
true
6
GO:0001058
1,058
obsolete RNA polymerase V activity
molecular_function
OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains an RNA polymerase V specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain ...
[ "GOC:txnOH" ]
The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity.
[ "DNA-directed RNA polymerase activity involved in transcription from RNA polymerase V promoter" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003899" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23779\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28520\" xsd:anyURI" ]
krc
2010-09-23T03:45:01Z
true
true
6
GO:0001059
1,059
transcription by RNA polymerase IV
biological_process
The synthesis of RNA from a DNA template by RNA polymerase IV, originating at a Pol IV-specific promoter.
[ "GOC:txnOH", "PMID:19110459" ]
null
[ "transcription from RNA pol IV promoter", "transcription from RNA polymerase IV promoter" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006351" ]
[]
[]
[]
[ "GO:0006351" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/14854\" xsd:anyURI" ]
krc
2010-09-23T03:51:35Z
false
true
6
GO:0001060
1,060
transcription by RNA polymerase V
biological_process
The synthesis of RNA from a DNA template by RNA polymerase V, originating at a Pol V-specific promoter.
[ "GOC:txnOH", "PMID:19110459" ]
null
[ "transcription from RNA pol V promoter", "transcription from RNA polymerase V promoter" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0006351" ]
[]
[]
[]
[ "GO:0006351" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/14854\" xsd:anyURI" ]
krc
2010-09-23T03:54:04Z
false
true
3
GO:0001061
1,061
obsolete bacterial-type RNA polymerase activity
molecular_function
OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a bacterial-type specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de...
[ "GOC:txnOH" ]
This term was obsoleted because the activity is the same as its parent.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003899" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16738\" xsd:anyURI" ]
krc
2010-10-19T03:36:01Z
true
true
7
GO:0001062
1,062
obsolete plastid PEP-A RNA polymerase activity
molecular_function
OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a plastid PEP-A RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can ini...
[ "GOC:txnOH", "PMID:20701995" ]
This term was obsoleted because the activity is the same as its parent.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003899" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16738\" xsd:anyURI" ]
krc
2010-10-19T03:38:49Z
true
true
7
GO:0001063
1,063
obsolete plastid PEP-B RNA polymerase activity
molecular_function
OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a plastid PEP-B RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can ini...
[ "GOC:txnOH", "PMID:20701995" ]
This term was obsoleted because the activity is the same as its parent.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003899" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16738\" xsd:anyURI" ]
krc
2010-10-19T03:46:46Z
true
true
5
GO:0001064
1,064
obsolete single subunit type RNA polymerase activity
molecular_function
OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single-subunit-type RNA polymerase-specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can ...
[ "GOC:txnOH" ]
The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity.
[ "T3/T7 type RNA polymerase activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003899" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23779\" xsd:anyURI" ]
krc
2010-10-19T03:47:56Z
true
true
9
GO:0001065
1,065
obsolete mitochondrial single subunit type RNA polymerase activity
molecular_function
OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single-subunit-type mitochondrial RNA polymerase-specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide a...
[ "GOC:txnOH" ]
The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003899" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23779\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28520\" xsd:anyURI" ]
krc
2010-10-19T03:50:51Z
true
true
7
GO:0001066
1,066
obsolete plastid single subunit type RNA polymerase activity
molecular_function
OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a single subunit type plastid RNA polymerase specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a ti...
[ "GOC:txnOH", "PMID:20701995" ]
The reason for obsoletion is that this term is equivalent to DNA-directed 5'-3' RNA polymerase activity.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003899" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23779\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/28520\" xsd:anyURI" ]
krc
2010-10-19T03:54:57Z
true
true
3
GO:0001067
1,067
transcription regulatory region nucleic acid binding
molecular_function
Binding to a nucleic acid region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair.
[ "GOC:txnOH" ]
null
[ "regulatory region nucleic acid binding" ]
[ "RELATED" ]
[]
[]
[]
[ "GO:0003676" ]
[]
[]
[]
[ "GO:0003676" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20791\" xsd:anyURI" ]
krc
2010-10-21T04:08:56Z
false
true
6
GO:0001068
1,068
transcription regulatory region RNA binding
molecular_function
Binding to a RNA region within the transcript that regulates the transcription of a gene, cistron, or operon.
[ "GOC:txnOH" ]
null
[]
[]
[]
[]
[]
[ "GO:0001069" ]
[]
[]
[]
[ "GO:0001069" ]
[]
[]
[]
[]
[]
[]
krc
2010-10-21T04:15:32Z
false
true
1
GO:0001069
1,069
regulatory region RNA binding
molecular_function
Binding to a RNA region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair.
[ "GOC:txnOH" ]
null
[]
[]
[]
[]
[]
[ "GO:0001067", "GO:0003723" ]
[]
[]
[]
[ "GO:0001067", "GO:0003723" ]
[]
[]
[]
[]
[]
[]
krc
2010-10-21T04:17:01Z
false
true
1
GO:0001070
1,070
RNA-binding transcription regulator activity
molecular_function
A transcription regulator activity that modulates the transcription of specific gene sets via selective and non-covalent binding to a specific RNA sequence. This function is known to occur in phages and viruses, for example the lambda N and the HIV tat proteins are necessary to allow RNA polymerase to read through term...
[ "GOC:txnOH-2018", "PMID:1756726" ]
null
[ "RNA binding transcription factor activity", "RNA binding transcription regulator activity" ]
[ "RELATED", "EXACT" ]
[]
[]
[]
[ "GO:0140110" ]
[ "has_part GO:0001068", "part_of GO:0045893" ]
[ "has_part", "part_of" ]
[ "GO:0001068", "GO:0045893" ]
[ "GO:0001068", "GO:0045893", "GO:0140110" ]
[ "GO:0140110", "has_part GO:0001068", "part_of GO:0045893" ]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/14872\" xsd:anyURI" ]
krc
2010-10-21T04:19:17Z
false
true
3
GO:0001072
1,072
transcription antitermination factor activity, RNA binding
molecular_function
Binds to RNA, typically within the nascent RNA transcript, to promote readthrough of a transcription termination site and thus extending the length of the RNA transcript produced. Examples of antitermination factors which bind the nascent RNA include the lambda N protein and the HIV-1 tat protein.
[ "GOC:txnOH", "PMID:8332211" ]
null
[ "RNA binding transcription antitermination factor activity" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0140110" ]
[ "part_of GO:0031564" ]
[ "part_of" ]
[ "GO:0031564" ]
[ "GO:0031564", "GO:0140110" ]
[]
[]
[]
[]
[]
[]
krc
2010-10-21T04:48:17Z
false
true
4
GO:0001073
1,073
transcription antitermination factor activity, DNA binding
molecular_function
Binds to DNA, typically within region of the promoter and transcribed region, to promote readthrough of a transcription termination site and thus extending the length of the RNA transcript produced. Examples of antitermination factors which bind DNA include the lambda Q protein.
[ "GOC:txnOH", "PMID:8332211" ]
null
[ "DNA binding transcription antitermination factor activity" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0140110" ]
[ "part_of GO:0031564" ]
[ "part_of" ]
[ "GO:0031564" ]
[ "GO:0031564", "GO:0140110" ]
[]
[]
[]
[]
[]
[]
krc
2010-10-21T05:18:52Z
false
true
1
GO:0001074
1,074
obsolete transcription factor activity, RNA polymerase II proximal promoter sequence-specific DNA binding involved in preinitiation complex assembly
molecular_function
OBSOLETE. Binding to a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase II (RNAP II) in order to promote assembly of the transcriptional preinitiation complex (PIC), the formation of which is a prerequisite for transcription from an RNA polymerase II promoter.
[ "GOC:txnOH" ]
This term has been obsoleted because it represents a GO-CAM model.
[ "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly", "transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding involved in preinitiation complex assembly" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16554\" xsd:anyURI" ]
krc
2010-10-22T02:30:43Z
true
true
3
GO:0001076
1,076
obsolete transcription factor activity, RNA polymerase II transcription factor binding
molecular_function
OBSOLETE. Binding to an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
[ "GOC:txnOH" ]
The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent.
[ "RNA polymerase II transcription factor binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0061629", "GO:0140110" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16053\" xsd:anyURI" ]
krc
2010-10-22T02:49:32Z
true
true
7
GO:0001080
1,080
nitrogen catabolite activation of transcription from RNA polymerase II promoter
biological_process
A transcription regulation process in which the presence of one nitrogen source leads to an increase in the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources.
[ "GOC:mah", "GOC:txnOH", "PMID:19104072" ]
null
[ "positive regulation of transcription from RNA polymerase II promoter by nitrogen catabolites" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0001079", "GO:0090294" ]
[]
[]
[]
[ "GO:0001079", "GO:0090294" ]
[]
[]
[]
[]
[]
[]
krc
2010-10-27T03:32:34Z
false
true
1
GO:0001081
1,081
nitrogen catabolite repression of transcription from RNA polymerase II promoter
biological_process
A transcription regulation process in which the presence of one nitrogen source leads to a decrease in the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources.
[ "GOC:mah", "GOC:txnOH", "PMID:19104072" ]
null
[ "negative regulation of transcription from RNA polymerase II promoter by nitrogen catabolites" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0001079", "GO:0090295" ]
[]
[]
[]
[ "GO:0001079", "GO:0090295" ]
[]
[]
[]
[]
[]
[]
krc
2010-10-27T03:38:05Z
false
true
6
GO:0001082
1,082
obsolete transcription factor activity, RNA polymerase I transcription factor binding
molecular_function
OBSOLETE. Binding to an RNA polymerase I transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
[ "GOC:txnOH" ]
This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child.
[ "RNA polymerase I transcription factor binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
krc
2010-10-27T04:03:47Z
true
true
9
GO:0001083
1,083
obsolete transcription factor activity, RNA polymerase II basal transcription factor binding
molecular_function
OBSOLETE. Binding to a basal RNA polymerase II transcription factor, which may be a single protein or a complex, in order to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.
[ "GOC:txnOH" ]
This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child.
[ "RNA polymerase II basal transcription factor binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
krc
2010-10-27T04:12:55Z
true
true
5
GO:0001084
1,084
obsolete transcription factor activity, TFIID-class binding
molecular_function
OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIID class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well.
[ "GOC:txnOH" ]
This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child.
[ "TFIID-class binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0001094" ]
[]
krc
2010-10-27T04:15:22Z
true
true
9
GO:0001086
1,086
obsolete transcription factor activity, TFIIA-class binding
molecular_function
OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIIA class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well.
[ "GOC:txnOH" ]
This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child.
[ "TFIIA-class binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0001092" ]
[]
krc
2010-10-28T02:14:59Z
true
true
7
GO:0001087
1,087
obsolete transcription factor activity, TFIIB-class binding
molecular_function
OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIIB class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well.
[ "GOC:txnOH" ]
This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child.
[ "TFIIB-class binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0001093" ]
[]
krc
2010-10-28T02:18:00Z
true
true
1
GO:0001088
1,088
obsolete transcription factor activity, TFIIE-class binding
molecular_function
OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIIE class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well.
[ "GOC:txnOH" ]
This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child.
[ "TFIIE-class binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0001095" ]
[]
krc
2010-10-28T02:25:22Z
true
true
9
GO:0001089
1,089
obsolete transcription factor activity, TFIIF-class transcription factor binding
molecular_function
OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIIF class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well.
[ "GOC:txnOH" ]
This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child.
[ "TFIIF-class binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0001096" ]
[]
krc
2010-10-28T02:27:12Z
true
true
4
GO:0001090
1,090
obsolete transcription factor activity, TFIIH-class binding
molecular_function
OBSOLETE. Binding to a basal RNA polymerase II transcription factor of the TFIIH class in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well.
[ "GOC:txnOH" ]
This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child.
[ "TFIIH-class binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
krc
2010-10-28T02:28:01Z
true
true
1
GO:0001091
1,091
RNA polymerase II general transcription initiation factor binding
molecular_function
Binding to a basal RNA polymerase II transcription factor, any of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor.
[ "GOC:txnOH", "PMID:16858867" ]
null
[ "RNA polymerase II basal transcription factor binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0000993", "GO:0140296" ]
[]
[]
[]
[ "GO:0000993", "GO:0140296" ]
[]
[]
[]
[]
[]
[]
krc
2010-10-28T02:30:02Z
false
true
4
GO:0001092
1,092
TFIIA-class transcription factor complex binding
molecular_function
Binding to a general RNA polymerase II transcription factor belonging to the TFIIA complex, one of the complexes involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor.
[ "GOC:krc", "PMID:16858867" ]
null
[ "TFIIA-class transcription factor binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0001091" ]
[]
[]
[]
[ "GO:0001091" ]
[]
[]
[]
[]
[]
[]
krc
2010-10-28T02:37:19Z
false
true
6
GO:0001093
1,093
TFIIB-class transcription factor binding
molecular_function
Binding to a general RNA polymerase II transcription factor of the TFIIB class, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
[ "GOC:krc", "PMID:16858867" ]
null
[]
[]
[]
[]
[]
[ "GO:0001091" ]
[]
[]
[]
[ "GO:0001091" ]
[]
[]
[]
[]
[]
[]
krc
2010-10-28T02:46:15Z
false
true
7
GO:0001094
1,094
TFIID-class transcription factor complex binding
molecular_function
Binding to a general RNA polymerase II transcription factor belonging to the TFIID complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
[ "GOC:krc", "PMID:16858867" ]
null
[ "TFIID-class transcription factor binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0001091" ]
[]
[]
[]
[ "GO:0001091" ]
[]
[]
[]
[]
[]
[]
krc
2010-10-28T02:48:33Z
false
true
9
GO:0001096
1,096
TFIIF-class transcription factor complex binding
molecular_function
Binding to a general RNA polymerase II transcription factor belonging to the TFIIF complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
[ "GOC:krc", "PMID:16858867" ]
null
[ "TFIIF-class transcription factor binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0001091" ]
[]
[]
[]
[ "GO:0001091" ]
[]
[]
[]
[]
[]
[]
krc
2010-10-28T02:51:20Z
false
true
4
GO:0001097
1,097
TFIIH-class transcription factor complex binding
molecular_function
Binding to a general RNA polymerase II transcription factor belonging to the TFIIH complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
[ "GOC:krc", "PMID:16858867" ]
null
[ "TFIIH-class transcription factor binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0001091" ]
[]
[]
[]
[ "GO:0001091" ]
[]
[]
[]
[]
[]
[]
krc
2010-10-28T02:51:41Z
false
true
7
GO:0001098
1,098
obsolete basal transcription machinery binding
molecular_function
OBSOLETE. Binding to a component of the basal transcription machinery which is composed of the RNA polymerase core enzyme and the basal transcription factor(s), the minimal set of factors required for formation of the preinitiation complex (PIC) by the RNA polymerase.
[ "GOC:txnOH" ]
This term was obsoleted because it is an unnecessary grouping term.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16062\" xsd:anyURI" ]
krc
2010-11-24T12:50:49Z
true
true
4
GO:0001099
1,099
obsolete basal RNA polymerase II transcription machinery binding
molecular_function
OBSOLETE. Binding to a component of the basal transcription machinery for RNA polymerase II which is composed of the RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits, and the basal RNA polymerase II transcription factors, the minimal set of factors re...
[ "GOC:txnOH" ]
This term was obsoleted because it is equivalent to RNA polymerase II complex binding ; GO:0000993.
[ "basal RNAP II transcription machinery binding" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0000993" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16062\" xsd:anyURI" ]
krc
2010-11-24T12:54:33Z
true
true
9
GO:0001100
1,100
negative regulation of exit from mitosis
biological_process
Any process involved in the inhibition of progression from anaphase/telophase (high mitotic CDK activity) to G1 (low mitotic CDK activity).
[ "GOC:rn" ]
null
[ "down regulation of exit from mitosis", "down-regulation of exit from mitosis", "downregulation of exit from mitosis", "inhibition of exit from mitosis" ]
[ "EXACT", "EXACT", "EXACT", "NARROW" ]
[]
[]
[]
[ "GO:0007096", "GO:1901991" ]
[ "negatively_regulates GO:0010458" ]
[ "negatively_regulates" ]
[ "GO:0010458" ]
[ "GO:0007096", "GO:0010458", "GO:1901991" ]
[ "GO:0065007", "negatively_regulates GO:0010458" ]
[]
[]
[]
[]
[]
null
null
false
true
4
GO:0001101
1,101
response to acid chemical
biological_process
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by the chemical structure of the anion portion of a dissociated acid (rather than the acid acting as a proton donor). The acid chemical...
[ "GOC:curators", "GOC:rn" ]
This term should be used to describe a response to a specific acid as a chemical. E.g., if an organism were responding to glutamate, then the response would be glutamate-specific; the organism is actually responding to the chemical structure of the anion portion of the dissociated acid. Note that this term is in the su...
[ "response to acid", "response to acid anion", "response to oxoanion" ]
[ "BROAD", "RELATED", "RELATED" ]
[]
[ "gocheck_do_not_annotate" ]
[]
[ "GO:0042221" ]
[]
[]
[]
[ "GO:0042221" ]
[]
[]
[]
[]
[]
[]
null
null
false
true
5
GO:0001108
1,108
bacterial-type RNA polymerase holo enzyme binding
molecular_function
Binding to a component of the basal transcription machinery which is composed of a bacterial-type RNA polymerase core enzyme and a sigma factor, the minimal set of factors required for formation of the preinitiation complex (PIC) by a bacterial-type RNA polymerase.
[ "GOC:txnOH" ]
null
[ "basal bacterial-type RNA polymerase transcription machinery binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0070063" ]
[]
[]
[]
[ "GO:0070063" ]
[]
[]
[]
[]
[]
[]
krc
2010-11-30T04:26:04Z
false
true
2
GO:0001109
1,109
promoter clearance during DNA-templated transcription
biological_process
Any process involved in the transition from the initiation to the elongation phases of transcription by a DNA-dependent RNA polymerase, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription facto...
[ "GOC:txnOH", "PMID:15020047", "PMID:18280161" ]
null
[ "promoter clearance during DNA-dependent transcription", "promoter clearance from bacterial-type RNA polymerase promoter", "promoter escape" ]
[ "EXACT", "NARROW", "BROAD" ]
[ "GO:0001122" ]
[]
[]
[ "GO:0032774" ]
[ "has_part GO:0001119", "part_of GO:0006351" ]
[ "has_part", "part_of" ]
[ "GO:0001119", "GO:0006351" ]
[ "GO:0001119", "GO:0006351", "GO:0032774" ]
[]
[]
[]
[]
[]
[]
krc
2010-12-01T02:13:09Z
false
true
5
GO:0001110
1,110
RNA polymerase III promoter clearance
biological_process
A process that mediates the transition from the initiation to the elongation phases of transcription by RNA polymerase III, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved ...
[ "GOC:txnOH" ]
null
[ "promoter clearance from RNA polymerase III promoter" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0001109" ]
[ "part_of GO:0006383" ]
[ "part_of" ]
[ "GO:0006383" ]
[ "GO:0001109", "GO:0006383" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23386\" xsd:anyURI" ]
krc
2010-12-01T03:08:29Z
false
true
5
GO:0001111
1,111
RNA polymerase II promoter clearance
biological_process
A process that mediates the transition from the initiation to the elongation phases of transcription by RNA polymerase II, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved o...
[ "GOC:txnOH", "PMID:15020047", "PMID:22982364", "PMID:31628251" ]
null
[ "promoter clearance from RNA polymerase II promoter", "promoter escape from RNA polymerase II promoter", "promoter-paused RNA polymerase II release" ]
[ "EXACT", "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0001109" ]
[ "part_of GO:0006366" ]
[ "part_of" ]
[ "GO:0006366" ]
[ "GO:0001109", "GO:0006366" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23386\" xsd:anyURI" ]
krc
2010-12-01T03:09:31Z
false
true
5
GO:0001112
1,112
DNA-templated transcription open complex formation
biological_process
Any process involved in the melting of the DNA hybrid of the core promoter region within the transcriptional closed complex of an RNA polymerase preinitiation complex (PIC) to produce an open complex where the DNA duplex around the transcription initiation site is unwound to form the transcription bubble.
[ "GOC:txnOH", "PMID:15020047", "PMID:18280161" ]
null
[ "DNA-dependent transcriptional open complex formation", "DNA-templated transcriptional open complex formation", "promoter melting", "transcription open complex formation at bacterial-type RNA polymerase promoter", "transcriptional open complex formation at bacterial-type RNA polymerase promoter" ]
[ "EXACT", "EXACT", "BROAD", "NARROW", "NARROW" ]
[ "GO:0001127" ]
[]
[]
[ "GO:0001120" ]
[ "part_of GO:0006352" ]
[ "part_of" ]
[ "GO:0006352" ]
[ "GO:0001120", "GO:0006352" ]
[]
[]
[]
[]
[]
[]
krc
2010-12-02T02:15:04Z
false
true
4
GO:0001113
1,113
transcription open complex formation at RNA polymerase II promoter
biological_process
Any process involved in the melting of the DNA hybrid of the core promoter region within the transcriptional closed complex of an RNA polymerase II preinitiation complex (PIC) to produce an open complex where the DNA duplex around the transcription initiation site is unwound to form the transcription bubble.
[ "GOC:txnOH", "PMID:15020047", "PMID:18280161" ]
null
[ "RNA polymerase II promoter melting", "transcriptional open complex formation at RNA polymerase II promoter" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0001112" ]
[ "part_of GO:0006367" ]
[ "part_of" ]
[ "GO:0006367" ]
[ "GO:0001112", "GO:0006367" ]
[]
[]
[]
[]
[]
[]
krc
2010-12-02T02:27:19Z
false
true
8
GO:0001114
1,114
protein-DNA-RNA complex
cellular_component
A macromolecular complex containing protein, DNA, and RNA molecules.
[ "GOC:txnOH" ]
null
[]
[]
[]
[]
[]
[ "GO:0032991" ]
[]
[]
[]
[ "GO:0032991" ]
[]
[]
[]
[]
[]
[]
krc
2010-12-03T02:09:38Z
false
true
2
GO:0001115
1,115
protein-DNA-RNA complex organization
biological_process
Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein-DNA-RNA complex.
[ "GOC:txnOH" ]
null
[ "protein-DNA-RNA complex subunit organisation" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0043933" ]
[]
[]
[]
[ "GO:0043933" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/25143\" xsd:anyURI" ]
krc
2010-12-03T04:00:02Z
false
true
7
GO:0001116
1,116
protein-DNA-RNA complex assembly
biological_process
The aggregation, arrangement and bonding together of proteins, DNA, and RNA molecules to form a protein-DNA-RNA complex.
[ "GOC:txnOH" ]
null
[]
[]
[]
[]
[]
[ "GO:0001115", "GO:0065003" ]
[]
[]
[]
[ "GO:0001115", "GO:0065003" ]
[]
[]
[]
[]
[]
[]
krc
2010-12-03T04:01:38Z
false
true
2
GO:0001117
1,117
protein-DNA-RNA complex disassembly
biological_process
The disaggregation of a protein-DNA-RNA complex into its constituent components.
[ "GOC:txnOH" ]
null
[]
[]
[]
[]
[]
[ "GO:0001115", "GO:0032984" ]
[]
[]
[]
[ "GO:0001115", "GO:0032984" ]
[]
[]
[]
[]
[]
[]
krc
2010-12-03T04:04:07Z
false
true
2
GO:0001118
1,118
transcription ternary complex disassembly
biological_process
The disaggregation of a transcription ternary complex, composed of RNA polymerase, template DNA, and an RNA transcript, into its constituent components.
[ "GOC:txnOH" ]
null
[ "transcription protein-DNA-RNA complex disassembly" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0001117" ]
[ "part_of GO:0006353" ]
[ "part_of" ]
[ "GO:0006353" ]
[ "GO:0001117", "GO:0006353" ]
[]
[]
[]
[]
[]
[]
krc
2010-12-03T04:11:34Z
false
true
6
GO:0001119
1,119
protein-DNA-RNA complex remodeling
biological_process
The acquisition, loss, or modification of macromolecules within a protein-DNA-RNA complex, resulting in the alteration of an existing complex.
[ "GOC:txnOH" ]
null
[]
[]
[]
[]
[]
[ "GO:0001115", "GO:0034367" ]
[]
[]
[]
[ "GO:0001115", "GO:0034367" ]
[]
[]
[]
[]
[]
[]
krc
2010-12-03T04:15:52Z
false
true
3
GO:0001120
1,120
protein-DNA complex remodeling
biological_process
The acquisition, loss, or modification of macromolecules within a protein-DNA complex, resulting in the alteration of an existing complex.
[ "GOC:txnOH" ]
null
[ "protein-DNA complex remodelling" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0034367", "GO:0071824" ]
[]
[]
[]
[ "GO:0034367", "GO:0071824" ]
[]
[]
[]
[]
[]
[]
krc
2010-12-03T04:17:15Z
false
true
3
GO:0001128
1,128
obsolete RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
molecular_function
OBSOLETE. Binding to an RNA polymerase II (RNAP II) regulatory transcription factor and also with the RNAP II basal transcription machinery in order to increase the frequency, rate or stability of the aggregation, arrangement and bonding together of proteins on RNA polymerase II promoter DNA to form the transcriptional...
[ "GOC:txnOH", "PMID:16858867" ]
This term was obsoleted because it represented a mix of function and process and is not annotated consistently
[ "RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
krc
2011-01-20T02:13:36Z
true
true
4
GO:0001129
1,129
obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
molecular_function
OBSOLETE. Binding to a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs), to facilitate the aggregation, arrangement and bonding together of proteins on RNA polymerase II promoter DNA to form the transcriptional preinitiation complex (PIC), the formation of which is a p...
[ "GOC:txnOH", "PMID:16858867" ]
The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent.
[ "TATA-binding protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly", "TBP-class protein binding RNA polymerase II transcription factor activity involved in preinitiation complex assembly" ]
[ "NARROW", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16053\" xsd:anyURI" ]
krc
2011-01-20T02:53:35Z
true
true
3
GO:0001132
1,132
obsolete RNA polymerase II transcription factor activity, TBP-class protein binding
molecular_function
OBSOLETE. Binding to a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs), in order to modulate transcription. The transcription factor may or may not also interact selectively with DNA as well.
[ "GOC:txnOH", "PMID:16858867" ]
The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent.
[ "TATA-binding protein binding RNA polymerase II transcription factor activity", "TBP-class protein binding RNA polymerase II transcription factor activity", "TRF protein binding RNA polymerase II transcription factor activity" ]
[ "NARROW", "EXACT", "NARROW" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16053\" xsd:anyURI" ]
krc
2011-01-20T04:15:44Z
true
true
8
GO:0001134
1,134
obsolete transcription regulator recruiting activity
molecular_function
OBSOLETE. The function of binding to an RNA polymerase (RNAP) transcription regulator and recruiting it to the general transcription machinery complex in order to modulate transcription initiation.
[ "GOC:txnOH-2018", "PMID:16858867" ]
The reason for obsoletion is that this function is redundant with other terms, most often 'transcription co-regulator activity; GO:0003712'.
[ "transcription factor activity, transcription factor recruiting", "transcription factor recruiting activity", "transcription factor recruiting transcription factor activity" ]
[ "RELATED", "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003712" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/15577\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/18561\" xsd:anyURI" ]
krc
2011-01-20T04:57:59Z
true
true
5
GO:0001135
1,135
obsolete RNA polymerase II transcription regulator recruiting activity
molecular_function
OBSOLETE. The function of binding to an RNA polymerase II (RNAP II) transcription regulator and recruiting it to the general transcription machinery complex in order to modulate transcription initiation.
[ "GOC:txnOH-2018", "PMID:16858867" ]
The reason for obsoletion is that this function is redundant with other terms, most often 'transcription co-regulator activity; GO:0003712'.
[ "RNA polymerase II transcription factor recruiting activity", "RNA polymerase II transcription factor recruiting transcription factor activity", "TFIIE-class transcription factor recruiting transcription factor activity", "TFIIF-class transcription factor recruiting transcription factor activity", "TFIIH-cl...
[ "EXACT", "EXACT", "NARROW", "NARROW", "NARROW", "RELATED", "NARROW", "NARROW", "NARROW" ]
[ "GO:0001136", "GO:0001137", "GO:0001138" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003712" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/15795\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/18561\" xsd:anyURI" ]
krc
2011-01-20T05:13:12Z
true
true
2
GO:0001139
1,139
obsolete RNA polymerase II complex recruiting activity
molecular_function
OBSOLETE. Binding to an RNA polymerase II (Pol II) complex, typically composed of twelve subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way in order to facilitate the aggregation, arrangement and bonding together of proteins on an RNA polymerase II...
[ "GOC:txnOH", "PMID:16858867" ]
This term was obsoleted because it is now represented by transcription coactivator activity ; GO:0003713.
[ "core RNA polymerase II recruiting transcription factor activity", "transcription factor activity, core RNA polymerase II recruiting" ]
[ "EXACT", "RELATED" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003713" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/31456\" xsd:anyURI" ]
krc
2011-01-20T05:55:01Z
true
true
2
GO:0001147
1,147
transcription termination site sequence-specific DNA binding
molecular_function
Binding to a sequence of DNA that promotes termination by RNA polymerase. The transcribed region might be described as a gene, cistron, or operon.
[ "GOC:txnOH", "PMID:18280161", "PMID:18391175" ]
Transcription termination sites can be recognized by the RNA polymerase (RNAP) itself or by another protein which interacts with the RNAP to promote transcription termination. Note that not all genes have a DNA specific sequence that functions as a termination site; for most mRNAs transcribed by RNAP II termination is ...
[ "bacterial-type RNA polymerase termination site sequence-specific DNA binding", "mitochondrial RNA polymerase termination site sequence-specific DNA binding", "mitochondrial RNA polymerase terminator site sequence-specific DNA binding transcription factor activity", "transcription factor activity, mitochondri...
[ "NARROW", "NARROW", "NARROW", "NARROW", "RELATED" ]
[ "GO:0001145", "GO:0001146", "GO:0001148", "GO:0001160" ]
[]
[]
[ "GO:0000976" ]
[ "part_of GO:0006353" ]
[ "part_of" ]
[ "GO:0006353" ]
[ "GO:0000976", "GO:0006353" ]
[]
[]
[]
[]
[]
[]
krc
2011-01-27T02:42:23Z
false
true
7
GO:0001149
1,149
obsolete transcription factor activity, bacterial-type RNA polymerase termination site sequence-specific binding
molecular_function
OBSOLETE. Binding to a sequence of DNA that is a termination site for bacterial-type RNA polymerase in order to promote transcription termination by bacterial-type RNA polymerase.
[ "GOC:txnOH", "PMID:18280161" ]
null
[ "bacterial-type RNA polymerase termination site sequence-specific DNA binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16730\" xsd:anyURI" ]
krc
2011-01-27T03:08:41Z
true
true
9
GO:0001153
1,153
obsolete transcription factor activity, RNA polymerase III transcription factor recruiting
molecular_function
OBSOLETE. The function of binding to an RNA polymerase III (RNAP III) transcription factor and recruiting it to the transcription machinery complex in order to modulate transcription by RNAP III.
[ "GOC:txnOH" ]
This term was made obsolete in the 2018 Transcription branch revision. This term was redundant with other terms.
[ "RNA polymerase III transcription factor recruiting transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
krc
2011-01-27T04:45:37Z
true
true
2
GO:0001154
1,154
TFIIIB-class transcription factor complex binding
molecular_function
Binding to a general RNA polymerase III transcription factor belonging to the TFIIB complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase III.
[ "GOC:txnOH", "PMID:12381659" ]
null
[ "TFIIIB-class transcription factor binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0001025" ]
[]
[]
[]
[ "GO:0001025" ]
[]
[]
[]
[]
[]
[]
krc
2011-01-27T04:53:50Z
false
true
2
GO:0001155
1,155
TFIIIA-class transcription factor binding
molecular_function
Binding to an RNA polymerase III transcription factor of the TFIIIA class, one of the factors involved in formation of the preinitiation complex (PIC) at RNA polymerase III promoters.
[ "GOC:txnOH", "PMID:12381659" ]
null
[]
[]
[]
[]
[]
[ "GO:0001025" ]
[]
[]
[]
[ "GO:0001025" ]
[]
[]
[]
[]
[]
[]
krc
2011-01-27T04:57:49Z
false
true
5
GO:0001156
1,156
TFIIIC-class transcription factor complex binding
molecular_function
Binding to a general RNA polymerase III transcription factor belonging to the TFIIC complex, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase III.
[ "GOC:txnOH", "PMID:12381659" ]
null
[ "TFIIIC-class transcription factor binding" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0001025" ]
[]
[]
[]
[ "GO:0001025" ]
[]
[]
[]
[]
[]
[]
krc
2011-01-27T05:02:22Z
false
true
6
GO:0001161
1,161
intronic transcription regulatory region sequence-specific DNA binding
molecular_function
Binding to an intronic DNA sequence that regulates the transcription of the transcript it is contained within.
[ "GOC:txnOH" ]
To minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter p...
[ "intronic transcription regulatory region DNA binding" ]
[ "RELATED" ]
[ "GO:0044213" ]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19312\" xsd:anyURI" ]
krc
2011-01-28T03:44:02Z
false
true
3
GO:0001162
1,162
RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
molecular_function
Binding to an RNA polymerase II intronic DNA sequence that regulates the transcription of the transcript it is contained within.
[ "GOC:txnOH" ]
To minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter p...
[]
[]
[]
[]
[]
[ "GO:0000977", "GO:0001161" ]
[]
[]
[]
[ "GO:0000977", "GO:0001161" ]
[]
[]
[]
[]
[]
[]
krc
2011-01-28T03:46:19Z
false
true
3
GO:0001163
1,163
RNA polymerase I transcription regulatory region sequence-specific DNA binding
molecular_function
Binding to a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase I.
[ "GOC:txnOH" ]
null
[ "RNA polymerase I regulatory region DNA binding" ]
[ "RELATED" ]
[ "GO:0001013" ]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[ "GO:0000976" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/19312\" xsd:anyURI" ]
krc
2011-01-31T04:12:06Z
false
true
6
GO:0001165
1,165
RNA polymerase I cis-regulatory region sequence-specific DNA binding
molecular_function
Binding to a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in cis relative to the transcription start site (i.e., on the same strand of DNA) of a gene transcribed by RNA polymerase I. RNA polymerase I elements are referred to either enhancers or upstream c...
[ "GOC:txnOH", "PMID:12865296", "PMID:14969726", "PMID:8057832" ]
null
[ "RNA polymerase I enhancer sequence-specific DNA binding", "RNA polymerase I upstream control element sequence-specific DNA binding", "RNA polymerase I upstream element sequence-specific DNA binding" ]
[ "RELATED", "RELATED", "RELATED" ]
[ "GO:0001166" ]
[]
[]
[ "GO:0001163" ]
[]
[]
[]
[ "GO:0001163" ]
[]
[]
[]
[]
[]
[]
krc
2011-01-31T05:29:59Z
false
true
4
GO:0001167
1,167
obsolete RNA polymerase I transcription factor activity, sequence-specific DNA binding
molecular_function
OBSOLETE. Binding to a specific DNA sequence in order to modulate transcription by RNA polymerase I. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
[ "GOC:txnOH" ]
This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child.
[ "sequence-specific DNA binding RNA polymerase I transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/15787\" xsd:anyURI" ]
krc
2011-02-03T04:07:46Z
true
true
6
GO:0001168
1,168
obsolete transcription factor activity, RNA polymerase I upstream control element sequence-specific binding
molecular_function
OBSOLETE. Binding to a upstream control element (UCE, or alternately referred to as the upstream element, UE), a sequence of DNA that is in cis with and relatively close to a core promoter for RNA polymerase I in order to modulate transcription by RNA polymerase I.
[ "GOC:txnOH", "PMID:12865296", "PMID:14969726", "PMID:8057832" ]
This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child.
[ "RNA polymerase I upstream control element sequence-specific DNA binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/15787\" xsd:anyURI" ]
krc
2011-02-03T04:10:23Z
true
true
2
GO:0001169
1,169
obsolete transcription factor activity, RNA polymerase I CORE element sequence-specific binding
molecular_function
OBSOLETE. Binding to CORE element, a regulatory region composed of the transcription start site and binding sites for transcription factors of the RNA polymerase I transcription machinery in order to modulate transcription by RNA polymerase I.
[ "GOC:txnOH", "PMID:12865296", "PMID:14969726", "PMID:8057832" ]
This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child.
[ "RNA polymerase I CORE element sequence-specific DNA binding transcription factor activity", "RNA polymerase I core promoter sequence-specific DNA binding transcription factor" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/15787\" xsd:anyURI" ]
krc
2011-02-03T04:10:42Z
true
true
1
GO:0001170
1,170
obsolete transcription factor activity, RNA polymerase I enhancer sequence-specific binding
molecular_function
OBSOLETE. Binding to a RNA polymerase I (Pol I) enhancer in order to modulate transcription by RNA polymerase I.
[ "GOC:txnOH", "PMID:12865296", "PMID:14969726", "PMID:8057832" ]
This term was obsoleted because it represents two separate functions. The corresponding 'binding' term should be used in combination with a transcription regulator activity child.
[ "RNA polymerase I enhancer sequence-specific DNA binding transcription factor activity" ]
[ "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/15787\" xsd:anyURI" ]
krc
2011-02-03T04:10:59Z
true
true
4
GO:0001171
1,171
reverse transcription
biological_process
A DNA synthesis process that uses RNA as the initial template for synthesis of DNA, but which also includes an RNase activity to remove the RNA strand of an RNA-DNA heteroduplex produced by the RNA-dependent synthesis step and use of the initial DNA strand as a template for DNA synthesis.
[ "GOC:txnOH", "PMID:20358252" ]
null
[]
[]
[]
[]
[ "Wikipedia:Reverse_transcription" ]
[ "GO:0006278" ]
[ "has_part GO:0003964", "has_part GO:0004533" ]
[ "has_part", "has_part" ]
[ "GO:0003964", "GO:0004533" ]
[ "GO:0003964", "GO:0004533", "GO:0006278" ]
[]
[]
[]
[]
[]
[]
krc
2011-03-14T03:51:08Z
false
true
8
GO:0001172
1,172
RNA-templated transcription
biological_process
The synthesis of an RNA transcript from an RNA template.
[ "GOC:txnOH" ]
null
[ "transcription, RNA-dependent", "transcription, RNA-templated" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0032774" ]
[ "part_of GO:0010467" ]
[ "part_of" ]
[ "GO:0010467" ]
[ "GO:0010467", "GO:0032774" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/22555\" xsd:anyURI" ]
krc
2011-03-14T03:54:46Z
false
true
8
GO:0001174
1,174
transcriptional start site selection at RNA polymerase II promoter
biological_process
Any process involved in the selection of the specific location within the template strand of an RNA polymerase II promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript.
[ "GOC:txnOH", "PMID:16826228", "PMID:18846104" ]
null
[]
[]
[]
[]
[]
[ "GO:0001173" ]
[ "part_of GO:0006367" ]
[ "part_of" ]
[ "GO:0006367" ]
[ "GO:0001173", "GO:0006367" ]
[]
[]
[]
[]
[]
[]
krc
2011-06-20T01:35:28Z
false
true
2
GO:0001175
1,175
transcriptional start site selection at RNA polymerase III promoter
biological_process
Any process involved in the selection of the specific location within the template strand of an RNA polymerase III promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript.
[ "GOC:txnOH" ]
null
[]
[]
[]
[]
[]
[ "GO:0001173" ]
[ "part_of GO:0006384" ]
[ "part_of" ]
[ "GO:0006384" ]
[ "GO:0001173", "GO:0006384" ]
[]
[]
[]
[]
[]
[]
krc
2011-06-20T01:47:38Z
false
true
6
GO:0001177
1,177
regulation of transcription open complex formation at RNA polymerase II promoter
biological_process
Any process that modulates the rate, frequency or extent of a process involved the melting of the DNA hybrid of the core promoter region within the transcriptional closed complex of an RNA polymerase II preinitiation complex (PIC) to produce an open complex where the DNA duplex around the transcription initiation site ...
[ "GOC:txnOH" ]
null
[ "regulation of transcriptional open complex formation at RNA polymerase II promoter" ]
[ "EXACT" ]
[]
[]
[]
[ "GO:0051128" ]
[ "regulates GO:0001113" ]
[ "regulates" ]
[ "GO:0001113" ]
[ "GO:0001113", "GO:0051128" ]
[ "GO:0065007", "regulates GO:0001113" ]
[]
[]
[]
[]
[]
krc
2011-06-20T02:01:18Z
false
true
1
GO:0001179
1,179
RNA polymerase I general transcription initiation factor binding
molecular_function
Binding to an RNA polymerase I transcription factor, a protein required to initiate or regulate transcription by RNA polymerase I.
[ "GOC:txnOH" ]
null
[ "RNA polymerase I transcription factor binding" ]
[ "BROAD" ]
[]
[]
[]
[ "GO:0140296" ]
[]
[]
[]
[ "GO:0140296" ]
[]
[]
[]
[]
[]
[]
krc
2011-08-12T03:03:03Z
false
true
8
GO:0001181
1,181
RNA polymerase I general transcription initiation factor activity
molecular_function
A general transcription initiation factor activity that contributes to transcription start site selection and transcription initiation of genes transcribed by RNA polymerase I. Factors required for RNA polymerase I transcription initiation include upstream activation factor (UAF), core factor (CF), TATA binding protein...
[ "GOC:txnOH-2018", "PMID:11500378", "PMID:17972917", "PMID:25346433", "PMID:28340337", "PMID:28842442", "PMID:31358304" ]
null
[ "core RNA polymerase I binding transcription factor activity", "general RNA polymerase I transcription factor activity", "RNA polymerase I transcription general initiation factor activity", "transcription factor activity, core RNA polymerase I binding" ]
[ "BROAD", "EXACT", "EXACT", "BROAD" ]
[]
[]
[]
[ "GO:0140223" ]
[ "part_of GO:0006360" ]
[ "part_of" ]
[ "GO:0006360" ]
[ "GO:0006360", "GO:0140223" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/14736\" xsd:anyURI", "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/20253\" xsd:anyURI" ]
krc
2011-08-12T04:13:30Z
false
true
1
GO:0001182
1,182
RNA polymerase I promoter clearance
biological_process
A process that mediates the transition from the initiation to the elongation phases of transcription by RNA polymerase I, generally including a conformational change from the initiation conformation to the elongation conformation. Promoter clearance often involves breaking contact with transcription factors involved on...
[ "GOC:txnOH", "PMID:18559419" ]
null
[ "promoter clearance from RNA polymerase I promoter", "promoter clearance from RNA polymerase I promoter for nuclear large rRNA transcript", "RNA polymerase I promoter escape" ]
[ "EXACT", "RELATED", "EXACT" ]
[ "GO:0001184" ]
[]
[]
[ "GO:0001109" ]
[ "part_of GO:0006360" ]
[ "part_of" ]
[ "GO:0006360" ]
[ "GO:0001109", "GO:0006360" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23386\" xsd:anyURI" ]
krc
2011-08-15T03:49:28Z
false
true
3
GO:0001186
1,186
obsolete RNA polymerase I transcription regulator recruiting activity
molecular_function
OBSOLETE. The function of binding to an RNA polymerase I (RNAP I) transcription regulator and recruiting it to the general transcription machinery complex in order to modulate transcription initiation.
[ "GOC:txnOH-2018", "PMID:12381659", "PMID:14969726", "PMID:8057832" ]
The reason for obsoletion is that this function is redundant with other terms, most often 'transcription co-regulator activity; GO:0003712'.
[ "RNA polymerase I transcription factor recruiting activity", "RNA polymerase I transcription factor recruiting transcription factor activity", "transcription factor activity, RNA polymerase I transcription factor recruiting" ]
[ "EXACT", "EXACT", "RELATED" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0003712" ]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/18561\" xsd:anyURI" ]
krc
2011-08-24T04:00:18Z
true
true
1
GO:0001188
1,188
RNA polymerase I preinitiation complex assembly
biological_process
The formation of a large multiprotein-DNA complex that self-assembles on gene promoter through the sequential recruitment of the general initiation factors that compose the preinitiation complex (PIC) (which includes including UBF, SL1, RRN3 and TBP in human). The PIC engages RNA polymerase I on its DNA template strand...
[ "GOC:txnOH", "PMID:14969726" ]
null
[ "RNA polymerase I transcriptional preinitiation complex assembly", "RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nuclear large rRNA transcript", "RNA polymerase I transcriptional preinitiation complex assembly at the promoter for the nucleolar primary rRNA transcript" ...
[ "EXACT", "NARROW", "NARROW" ]
[ "GO:0001189" ]
[]
[]
[ "GO:0070897" ]
[ "part_of GO:0006361" ]
[ "part_of" ]
[ "GO:0006361" ]
[ "GO:0006361", "GO:0070897" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/25954\" xsd:anyURI" ]
krc
2011-08-24T04:16:28Z
false
true
8
GO:0001190
1,190
obsolete transcriptional activator activity, RNA polymerase II transcription factor binding
molecular_function
OBSOLETE. Binding to an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to increase the frequency, rate or extent of transcription from an RNA polymerase II promoter. A protein binding transcription factor may or may not also interact with the template nucleic acid (either D...
[ "GOC:txnOH" ]
The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent.
[ "RNA polymerase II transcription factor binding transcription activator activity", "RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0001228", "GO:0061629" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16053\" xsd:anyURI" ]
krc
2011-08-25T02:07:14Z
true
true
8
GO:0001191
1,191
obsolete transcriptional repressor activity, RNA polymerase II transcription factor binding
molecular_function
OBSOLETE. Binding to an RNA polymerase II transcription factor, which may be a single protein or a complex, in order to stop, prevent, or reduce the frequency, rate or extent of transcription from an RNA polymerase II promoter. A protein binding transcription factor may or may not also interact with the template nuclei...
[ "GOC:txnOH", "PMID:9811836" ]
The reason for obsoletion is that this concept is partly covered by other concepts in the ontology and usage has been inconsistent.
[ "RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription", "RNA polymerase II transcription factor binding transcription repressor activity", "RNA polymerase II transcription repressor activity" ]
[ "EXACT", "EXACT", "BROAD" ]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "GO:0001227", "GO:0061629" ]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/16053\" xsd:anyURI" ]
krc
2011-08-25T02:12:30Z
true
true
8
GO:0001192
1,192
maintenance of transcriptional fidelity during transcription elongation
biological_process
Suppression of the occurrence of transcriptional errors, such as substitutions and/or insertions of nucleotides that do not correctly match the template base, during the process of transcription elongation on a DNA template.
[ "GOC:txnOH" ]
null
[ "maintenance of transcriptional fidelity during DNA-dependent transcription elongation", "maintenance of transcriptional fidelity during DNA-dependent transcription elongation from bacterial-type RNA polymerase promoter", "maintenance of transcriptional fidelity during DNA-templated transcription elongation", ...
[ "EXACT", "EXACT", "EXACT", "NARROW" ]
[ "GO:0001194" ]
[]
[]
[ "GO:0032774" ]
[ "part_of GO:0006354" ]
[ "part_of" ]
[ "GO:0006354" ]
[ "GO:0006354", "GO:0032774" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23386\" xsd:anyURI" ]
krc
2011-09-02T02:25:30Z
false
true
5
GO:0001193
1,193
maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II
biological_process
Suppression of the occurrence of transcriptional errors, such as substitutions and/or insertions of nucleotides that do not correctly match the template base, during the process of transcription elongation from an RNA polymerase II promoter.
[ "GOC:txnOH", "PMID:14531857", "PMID:16492753", "PMID:17535246" ]
null
[ "maintenance of transcriptional fidelity during DNA-dependent transcription elongation from RNA polymerase II promoter", "maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0001192" ]
[ "part_of GO:0006368" ]
[ "part_of" ]
[ "GO:0006368" ]
[ "GO:0001192", "GO:0006368" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23386\" xsd:anyURI" ]
krc
2011-09-02T02:31:00Z
false
true
5
GO:0001195
1,195
maintenance of transcriptional fidelity during transcription elongation by RNA polymerase III
biological_process
Suppression of the occurrence of transcriptional errors, such as substitutions and/or insertions of nucleotides that do not correctly match the template base, during the process of transcription elongation from a RNA polymerase III promoter.
[ "GOC:txnOH" ]
null
[ "maintenance of transcriptional fidelity during DNA-dependent transcription elongation from RNA polymerase III promoter", "maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase III promoter" ]
[ "EXACT", "EXACT" ]
[]
[]
[]
[ "GO:0001192" ]
[ "part_of GO:0006385" ]
[ "part_of" ]
[ "GO:0006385" ]
[ "GO:0001192", "GO:0006385" ]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/23386\" xsd:anyURI" ]
krc
2011-09-02T02:41:29Z
false
true
5
GO:0001196
1,196
obsolete regulation of mating-type specific transcription from RNA polymerase II promoter
biological_process
OBSOLETE. Any mating-type specific process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
[ "GOC:txnOH" ]
This term was obsoleted because it represents a GO-CAM model.
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[]
[ "term_tracker_item \"https://github.com/geneontology/go-ontology/issues/12739\" xsd:anyURI" ]
krc
2011-11-23T09:25:32Z
true
true
4