instruction stringlengths 225 2.35k | input stringlengths 89 1.5k | response stringclasses 698 values |
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<Instruct>: Given the context 'Adenoviral delivery of ribozymes increases the proliferation of cardiac myocytes
We examined the effects of the ribozyme on the growth of cultured neonatal rat cardiac myocytes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rat (aka rattus) (aka rattus)
B: rattus norvegicus albus
C: house rat (aka rattus rattus)
D: rattus pyctoris (rattus rattoides) (aka rattus pyctoris)
E: rat (aka rattus norvegicus) (aka rattus norvegicus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Supporting evidence for the involvement of IGF-II in the proliferative effect resulting from loss of M6P/IGF2R function comes from studies of M6P/IGF2R knock-out mice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus castaneus (aka mus musculus castaneus)
B: mus <genus> (mice (aka mus <genus>))
C: mus sp. (mice (aka mus sp.))
D: mouse (aka mus musculus)
E: peromyscus
F: None of the above. | [D] |
<Instruct>: Given the context 'M6P/IGF2R-null mice display global hyperplasia that coincides with elevated levels of IGF-II.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mice]
<Options>: A: mus musculoides (mus musculoides enclavae) (aka mus musculoides)
B: peromyscus
C: mus cricetus (aka cricetus cricetus)
D: mus castaneus (aka mus musculus castaneus)
E: mouse (aka mus musculus)
F: None of the above. | [E] |
<Instruct>: Given the context 'The nucleotide numbers of the rat M6P/IGF2R sequence targeted by the hammerhead ribozyme is 1147–1160 after coding site (exon 9).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus norvegicus (rats (aka rattus norvegicus))
B: rats (aka rattus) (aka rattus)
C: rattus norvegicus albus
D: roof rat (aka rattus rattus)
E: rats (aka rattus sp.) (aka rattus sp.)
F: None of the above. | [A] |
<Instruct>: Given the context 'Cell cultures and infection with Ad-GFP/Rz-IGF2R and Ad-GFP
Cardiac myocytes were isolated from 1-day-old newborn rats using the Neonatal Cardiomyocyte Isolation System (Worthington).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rats]
<Options>: A: rattus rattus (rattus wroughtoni) (aka rattus rattus)
B: rattus sp. (rats (aka rattus sp.))
C: rattus norvegicus albus
D: rat (aka rattus norvegicus) (aka rattus norvegicus)
E: rattus rattoides (aka rattus pyctoris)
F: None of the above. | [D] |
<Instruct>: Given the context 'The isolated cells were plated in 6-well plates and cultured in F-10 medium containing 5% (vol/vol) FBS and 10% (vol/vol) horse serum at 37°C in a tissue culture incubator with 5% CO2 and 98% relative humidity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [horse]
<Options>: A: equus subg. equus (aka equus)
B: equetus
C: equus przewalskii (equus caballus przewalskii) (aka equus przewalskii)
D: equus caballus (equus przewalskii forma caballus) (aka equus caballus)
E: eques
F: None of the above. | [D] |
<Instruct>: Given the context 'The plasmid containing the rat M6P/IGF2R gene was linearized and used as a transcription template.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus norvegicus albus
B: rattus pyctoris (rattus rattoides) (aka rattus pyctoris)
C: norway rat (aka rattus norvegicus)
D: house rat (aka rattus rattus)
E: rattus sp. (rats (aka rattus sp.))
F: None of the above. | [C] |
<Instruct>: Given the context 'Antisense RNA probes were transcribed in vitro using [33P]-UTP, T7 polymerase (Riboprobea System T7 kit, Promega), hybridized with the total RNA extracted from the rat cardiomyocytes, and digested with ribonuclease to remove non-hybridized RNA and probe.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rat]
<Options>: A: rattus norvegicus albus
B: rat (aka rattus) (aka rattus)
C: brown rat (aka rattus norvegicus)
D: rattus sp. (rats (aka rattus sp.))
E: rattus rattoides (aka rattus pyctoris)
F: None of the above. | [C] |
<Instruct>: Given the context 'Briefly, cells were permeabilized with 0.25% saponin in 50 mM Hepes (pH 7.0), 150 mM NaCl, 5 mM β-glycerophosphate, 0.5% human serum albumin, and 10 mM mannose-6-phosphate (M6P) for 30 minutes on ice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: placental mammals (aka eutheria)
C: cellular organisms (biota) (aka cellular organisms)
D: homo (humans) (aka homo)
E: kingdom
F: None of the above. | [A] |
<Instruct>: Given the context 'They were incubated with 20,000 units/ml β-glucuronidase from bovine liver (Sigma) in 50 mM Hepes (pH 7.5) containing 150 mM NaCl, 5 mM β-glycerophosphate, 0.5% human serum albumin, 0.5% saponin with or without 10 mM M6P overnight on ice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bovine; human]
<Options>: A: bos (cattle) (aka bos)
B: boveria
C: bovidae
D: bos indicus (bos primigenius indicus) (aka bos indicus)
E: kingdom
F: bos primigenius taurus (aka bos taurus)
G: genus
H: human (aka homo sapiens)
I: primate (aka primates)
J: cellular organisms (biota) (aka cellular organisms)
K: None of the above. | [F; H] |
<Instruct>: Given the context 'They were incubated with 20,000 units/ml β-glucuronidase from bovine liver (Sigma) in 50 mM Hepes (pH 7.5) containing 150 mM NaCl, 5 mM β-glycerophosphate, 0.5% human serum albumin, 0.5% saponin with or without 10 mM M6P overnight on ice.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bovine; human]
<Options>: A: bos taurus x bos indicus (aka bos indicus x bos taurus)
B: bos taurus indicus (aka bos indicus)
C: bos (cattle) (aka bos)
D: bovinae
E: cow (aka bos taurus) (aka bos taurus)
F: human (aka homo sapiens)
G: kingdom
H: genus
I: biota (aka cellular organisms)
J: macrobiotus sapiens
K: None of the above. | [E; F] |
<Instruct>: Given the context 'Briefly, confluent cell cultures were washed twice with pre-warmed serum-free DMEM followed by incubation with DMEM containing 5 mg/ml human serum albumin and 10 mM M6P for 20 minutes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: macrobiotus sapiens
B: suborder
C: homo sapiens (human) (aka homo sapiens)
D: primate (aka primates)
E: birds (aka aves)
F: None of the above. | [C] |
<Instruct>: Given the context 'Cells were then incubated in DMEM containing 5 mg/ml human serum albumin alone or 4000 units β-glucuronidase with or without 10 mM M6P for 2 hours at 37°C.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: human (aka homo sapiens)
B: suborder
C: placental mammals (aka eutheria)
D: mammals (aka mammalia)
E: this
F: None of the above. | [A] |
<Instruct>: Given the context 'For example, Britto and Elliot reported that the loss of abductor pollicis longus and extensor pollicis brevis in their two patients did not show functional compromise of strength and grip strength', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [patients]
<Options>: A: homo sapiens (human) (aka homo sapiens)
B: homo (humans) (aka homo)
C: probles
D: other (aka unidentified)
E: mus <genus> (mice (aka mus <genus>))
F: None of the above. | [A] |
<Instruct>: Given the context 'Genomic-Bioinformatic Analysis of Transcripts Enriched in the Third-Stage Larva of the Parasitic Nematode Ascaris suum
Abstract
Differential transcription in Ascaris suum was investigated using a genomic-bioinformatic approach.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ascaris suum]
<Options>: A: pig roundworm (aka ascaris suum)
B: anisakis simplex (ascaris simplex) (aka anisakis simplex)
C: ascaris dispar (aka heterakis dispar)
D: ascaris muris (aka mastophorus muris)
E: ascaris gallinarum (aka heterakis gallinarum)
F: None of the above. | [A] |
<Instruct>: Given the context 'A cDNA archive enriched for molecules in the infective third-stage larva (L3) of A. suum was constructed by suppressive-subtractive hybridization (SSH), and a subset of cDNAs from 3075 clones subjected to microarray analysis using cDNA probes derived from RNA from different developmental stages of A. suum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: sueus
B: suillus
C: suarius
D: eubacterium suis (aka actinobaculum suis)
E: suina (suiformes) (aka suina)
F: None of the above. | [F] |
<Instruct>: Given the context 'Of the 91 clusters assembled, 56 molecules (61.5%) had homologues/orthologues in the free-living nematodes Caenorhabditis elegans and C. briggsae and/or other organisms, whereas 35 (38.5%) had no significant similarity to any sequences available in current gene databases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans; c. briggsae]
<Options>: A: tomicodon briggsi
B: theocolax elegans
C: polyzonia elegans
D: [candida] gorgasii (candida gorgasii) (aka [candida] gorgasii)
E: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
F: rhabditis briggsae (aka caenorhabditis briggsae)
G: ectopsocus briggsi
H: rhabditis elegans (aka caenorhabditis elegans)
I: drosophila elegans
J: galactomyces britannicus (aka geotrichum candidum)
K: None of the above. | [H; F] |
<Instruct>: Given the context 'Of the 91 clusters assembled, 56 molecules (61.5%) had homologues/orthologues in the free-living nematodes Caenorhabditis elegans and C. briggsae and/or other organisms, whereas 35 (38.5%) had no significant similarity to any sequences available in current gene databases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans; c. briggsae]
<Options>: A: theocolax elegans
B: ectopsocus briggsi
C: tomicodon briggsi
D: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
E: drosophila elegans
F: galactomyces britannicus (aka geotrichum candidum)
G: polyzonia elegans
H: [candida] gorgasii (candida gorgasii) (aka [candida] gorgasii)
I: rhabditis elegans (aka caenorhabditis elegans)
J: None of the above. | [I; J] |
<Instruct>: Given the context 'Of the 91 clusters assembled, 56 molecules (61.5%) had homologues/orthologues in the free-living nematodes Caenorhabditis elegans and C. briggsae and/or other organisms, whereas 35 (38.5%) had no significant similarity to any sequences available in current gene databases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans; c. briggsae]
<Options>: A: galactomyces britannicus (aka geotrichum candidum)
B: myzomyia elegans (aka anopheles elegans)
C: rhabditis briggsae (aka caenorhabditis briggsae)
D: zodarion elegans (enyo elegans) (aka zodarion elegans)
E: briggsus
F: bactris elegans
G: caenorhabditis
H: rhabditis elegans (aka caenorhabditis elegans)
I: cryptococcus neoformans var. grubii
J: carinogammarinae
K: None of the above. | [H; C] |
<Instruct>: Given the context 'Transcripts encoding protein kinases, protein phosphatases (and their precursors), and enolases were abundantly represented in the L3 of A. suum, as were molecules involved in cellular processes, such as ubiquitination and proteasome function, gene transcription, protein–protein interactions, and function.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: actinomyces suis (aka actinobaculum suis)
B: actinobacillus suis
C: maratus suae
D: paracoccus suum
E: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
F: None of the above. | [F] |
<Instruct>: Given the context 'In silico analyses inferred the C. elegans orthologues/homologues (n = 50) to be involved in apoptosis and insulin signaling (2%), ATP synthesis (2%), carbon metabolism (6%), fatty acid biosynthesis (2%), gap junction (2%), glucose metabolism (6%), or porphyrin metabolism (2%), although 34 (68%) of them could not be mapped to a specific metabolic pathway.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: rhabditis elegans (aka caenorhabditis elegans)
B: drosophila elegans
C: caenorhabditis vulgaris (aka caenorhabditis remanei)
D: cyclostrongylus elegans
E: theocolax elegans
F: None of the above. | [A] |
<Instruct>: Given the context 'Functionally, 17 (34%) of them were predicted to be associated with (non-wild-type) RNAi phenotypes in C. elegans, the majority being embryonic lethality (Emb) (13 types; 58.8%), larval arrest (Lva) (23.5%) and larval lethality (Lvl) (47%).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: bactris elegans
B: myzomyia elegans (aka anopheles elegans)
C: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
D: rhabditis elegans (aka caenorhabditis elegans)
E: caromyxa elegans (aka mutinus elegans)
F: None of the above. | [D] |
<Instruct>: Given the context 'A genetic interaction network was predicted for these 17 C. elegans orthologues, revealing highly significant interactions for nine molecules associated with embryonic and larval development (66.9%), information storage and processing (5.1%), cellular processing and signaling (15.2%), metabolism (6.1%), and unknown function (6.7%).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: bactris elegans
B: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
C: rhabditis elegans (aka caenorhabditis elegans)
D: myzomyia elegans (aka anopheles elegans)
E: uca elegans (aka tubuca elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'The potential roles of these molecules in development are discussed in relation to the known roles of their homologues/orthologues in C. elegans and some other nematodes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
B: rhabditis elegans (aka caenorhabditis elegans)
C: cyclostrongylus elegans
D: elegans subgroup (in: flies)
E: caenorhabditis vulgaris (aka caenorhabditis remanei)
F: None of the above. | [B] |
<Instruct>: Given the context 'The results of the present study provide a basis for future functional genomic studies to elucidate molecular aspects governing larval developmental processes in A. suum and/or the transition to parasitism.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suarius
B: paracoccus suum
C: suaeda fruticosa mult. auct. (aka suaeda vera)
D: suiformes (aka suina)
E: suillus
F: None of the above. | [F] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: uromyces americanus
B: necator americanus (new world hookworm) (aka necator americanus)
C: ancylostoma caninum (dog hookworm) (aka ancylostoma caninum)
D: species group
E: homo sapiens (human) (aka homo sapiens)
F: trichocerca
G: trichoneura
H: ancylostoma duodenale (agchylostoma duodenale) (aka ancylostoma duodenale)
I: suborder
J: necator sp.
K: other (aka unidentified)
L: trichuris vulpis (trichocephalus vulpis) (aka trichuris vulpis)
M: humans (aka homo)
N: human whipworm (aka trichuris trichiura)
O: trichuris ovis (trichocephalus ovis) (aka trichuris ovis)
P: ancylostoma
Q: xiphinema americanum (american dagger nematode) (aka xiphinema americanum)
R: ancylodes
S: campsicnemus americanus
T: ancylus
U: None of the above. | [E; H; B; N] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: ancylodes
B: ancylis diminutana (ancylis diminuatana) (aka ancylis diminutana)
C: kingdom
D: trichuris sp. (trichuris sp) (aka trichuris sp.)
E: ancylostomatinae
F: uromyces americanus
G: ascaris trichiura (aka trichuris trichiura)
H: esox americanus
I: pleuronectes americanus (aka pseudopleuronectes americanus)
J: necator americanus (new world hookworm) (aka necator americanus)
K: human (aka homo sapiens)
L: ancylomia disparalis (aka ancylolomia disparalis)
M: spiralomyces americanus
N: trichuridae
O: trichuris suis (trichocephalus suis) (aka trichuris suis)
P: species group
Q: psyche
R: agchylostoma duodenale (aka ancylostoma duodenale)
S: trichocerca
T: animals (aka metazoa)
U: None of the above. | [K; R; J; G] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: trichocephalus muris (aka trichuris muris)
B: this
C: graphomya americana
D: ascaris trichiura (aka trichuris trichiura)
E: biota (aka cellular organisms)
F: agchylostoma duodenale (aka ancylostoma duodenale)
G: neomysis americana (mysis americana) (aka neomysis americana)
H: suborder
I: trichocephalus
J: echinothrips americanus
K: trichuris sp (aka trichuris sp.)
L: ancyloscelis
M: necator americanus (new world hookworm) (aka necator americanus)
N: ancylis diminuatana (aka ancylis diminutana)
O: musculus
P: homo sapiens (human) (aka homo sapiens)
Q: pleuronectes americanus (aka pseudopleuronectes americanus)
R: trichocephalus ovis (aka trichuris ovis)
S: ancylostoma
T: ancylis
U: None of the above. | [P; F; M; D] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: graphomya americana
B: ancylis
C: ancylis diminuatana (aka ancylis diminutana)
D: necator americanus (new world hookworm) (aka necator americanus)
E: musculus
F: ascaris trichiura (aka trichuris trichiura)
G: biota (aka cellular organisms)
H: trichocephalus ovis (aka trichuris ovis)
I: trichocephalus muris (aka trichuris muris)
J: trichuris sp (aka trichuris sp.)
K: neomysis americana (mysis americana) (aka neomysis americana)
L: this
M: agchylostoma duodenale (aka ancylostoma duodenale)
N: suborder
O: echinothrips americanus
P: trichocephalus
Q: ancyloscelis
R: pleuronectes americanus (aka pseudopleuronectes americanus)
S: ancylostoma
T: None of the above. | [T; M; D; F] |
<Instruct>: Given the context 'For example, hundreds of millions of people are infected with geohelminths (soil-transmitted worms), such as blood-feeding hookworms Ancylostoma duodenale and/or Necator americanus, Trichuris trichiura and Ascaris spp.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [people; ancylostoma duodenale; necator americanus; trichuris trichiura]
<Options>: A: human (aka homo sapiens)
B: trichocephaloidis
C: trichuris sp (aka trichuris sp.)
D: ancylis diminuatana (aka ancylis diminutana)
E: genus
F: suborder
G: ancylis sp. a
H: trichocephalus suis (aka trichuris suis)
I: neomysis americana (mysis americana) (aka neomysis americana)
J: necator americanus (new world hookworm) (aka necator americanus)
K: other (aka unidentified)
L: human whipworm (aka trichuris trichiura)
M: ancylostoma duodenale (agchylostoma duodenale) (aka ancylostoma duodenale)
N: ancylostoma caninum (dog hookworm) (aka ancylostoma caninum)
O: avian (aka aves)
P: campsicnemus americanus
Q: trichiura
R: echinothrips americanus
S: entomoscelis americana
T: ancylostoma braziliense
U: None of the above. | [A; M; J; L] |
<Instruct>: Given the context '[1], causing serious adverse effects on human health, particularly in children.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; children]
<Options>: A: chicken (aka gallus gallus)
B: animals (aka metazoa)
C: menetus
D: primate (aka primates)
E: species
F: superclass
G: human (aka homo sapiens)
H: genus
I: None of the above. | [G; G] |
<Instruct>: Given the context '[1], causing serious adverse effects on human health, particularly in children.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; children]
<Options>: A: human (aka homo sapiens)
B: suborder
C: superclass
D: species
E: animals (aka metazoa)
F: humans (aka homo)
G: probles
H: mammals (aka mammalia)
I: neonetus
J: None of the above. | [A; A] |
<Instruct>: Given the context 'Similarly, parasitic nematodes of livestock, such as pigs, also cause substantial economic losses due to subclinical and clinical diseases, with billions of dollars spent annually on the treatment and control of gastro-intestinal nematodes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: mus porcellus (aka cavia porcellus)
B: sus scrofa domesticus (sus scrofa domestica) (aka sus scrofa domesticus)
C: gallus domesticus (aka gallus gallus)
D: pig (aka sus scrofa) (aka sus scrofa)
E: gallus
F: None of the above. | [D] |
<Instruct>: Given the context 'Compared with the free-living nematode Caenorhabditis elegans, there is very little information on fundamental molecular aspects of development in parasitic nematodes [6]–[8].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans]
<Options>: A: elegans subgroup (in: mosquitos)
B: drosophila elegans
C: polyzonia elegans
D: bactris elegans
E: rhabditis elegans (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'Compared with the free-living nematode Caenorhabditis elegans, there is very little information on fundamental molecular aspects of development in parasitic nematodes [6]–[8].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [caenorhabditis elegans]
<Options>: A: elegans subgroup (in: mosquitos)
B: bactris elegans
C: drosophila elegans
D: polyzonia elegans
E: None of the above. | [E] |
<Instruct>: Given the context 'Since the genome sequence of C. elegans was published in 1998 [9], many aspects of the molecular biology of this nematode have been elucidated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: bactris elegans
B: drosophila elegans
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: elegans subgroup (in: mosquitos)
E: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'For instance, microarray analyses have been used to examine developmental and gender-enriched gene expression [10],[11], and the functions of more than 96% of the C. elegans genes have been assessed by double-stranded RNA interference (RNAi, or gene silencing;', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: bactris elegans
B: caromyxa elegans (aka mutinus elegans)
C: rhabditis elegans (aka caenorhabditis elegans)
D: enyo elegans (aka zodarion elegans)
E: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'Comparative analyses of genetic data sets have shown that parasitic nematodes usually share ∼50–70% of genes with C. elegans (e.g., [19],[20]).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: elegans subgroup (in: flies)
B: theocolax elegans
C: elegans subgroup (in: mosquitos)
D: rhabditis elegans (aka caenorhabditis elegans)
E: myzomyia elegans (aka anopheles elegans)
F: None of the above. | [D] |
<Instruct>: Given the context 'There is similarity in other features (such as basic body plan and moulting) between C. elegans and parasitic nematodes, suggesting that some molecular pathways are relatively conserved [8],[21].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: bactris elegans
B: caenorhabditis sp.
C: myzomyia elegans (aka anopheles elegans)
D: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
E: elegans subgroup (in: flies)
F: None of the above. | [D] |
<Instruct>: Given the context 'Despite the advances in genomic technologies [7], [22]–[29] and the study of C. elegans, there is a paucity of information on the genomics of parasitic nematodes of animals, particularly in relation to development.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: drosophila elegans
B: uca elegans (aka tubuca elegans)
C: caenorhabditis sp.
D: rhabditis elegans (aka caenorhabditis elegans)
E: zodarion elegans (enyo elegans) (aka zodarion elegans)
F: None of the above. | [D] |
<Instruct>: Given the context 'Also considering the major socioeconomic impact of Ascaris and ascariasis in humans and pigs [30]–[32], several characteristics, including the large size of the adult worm (providing the opportunity of investigating individual organ systems and tissues), the ability to maintain Ascaris in the pig, store eggs and culture larvae in vitro for relatively long periods of time (months to years)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans; pigs; pig]
<Options>: A: bovidae
B: gallus
C: genus
D: human (aka homo sapiens)
E: pig (aka sus scrofa) (aka sus scrofa)
F: sus domesticus (aka sus scrofa domesticus)
G: guinea-pigs (aka cavia)
H: hominoidea (apes (aka hominoidea))
I: mammals (aka mammalia)
J: gallus domesticus (aka gallus gallus)
K: birds (aka aves)
L: guinea pig (aka cavia porcellus)
M: None of the above. | [D; E; E] |
<Instruct>: Given the context 'Also considering the major socioeconomic impact of Ascaris and ascariasis in humans and pigs [30]–[32], several characteristics, including the large size of the adult worm (providing the opportunity of investigating individual organ systems and tissues), the ability to maintain Ascaris in the pig, store eggs and culture larvae in vitro for relatively long periods of time (months to years)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans; pigs; pig]
<Options>: A: gallus
B: swine (aka sus scrofa)
C: sus domestica (aka sus scrofa domesticus)
D: animals (aka metazoa)
E: human (aka homo sapiens)
F: hominoidea (apes (aka hominoidea))
G: primate (aka primates)
H: homo (humans) (aka homo)
I: guinea-pigs (aka cavia)
J: sus scrofa domesticus (sus scrofa domestica) (aka sus scrofa domesticus)
K: mus porcellus (aka cavia porcellus)
L: bovidae
M: boars (aka suidae)
N: None of the above. | [E; B; B] |
<Instruct>: Given the context 'Also considering the major socioeconomic impact of Ascaris and ascariasis in humans and pigs [30]–[32], several characteristics, including the large size of the adult worm (providing the opportunity of investigating individual organ systems and tissues), the ability to maintain Ascaris in the pig, store eggs and culture larvae in vitro for relatively long periods of time (months to years)', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [humans; pigs; pig]
<Options>: A: domestic guinea pig (aka cavia porcellus)
B: pigs (aka suidae) (aka suidae)
C: macrobiotus sapiens
D: homo sapiens (human) (aka homo sapiens)
E: chickens (aka gallus gallus)
F: gallus
G: pig (aka sus scrofa) (aka sus scrofa)
H: gallus domesticus (aka gallus gallus)
I: primate (aka primates)
J: avian (aka aves)
K: sus domestica (aka sus scrofa domesticus)
L: domestic pig (aka sus scrofa domesticus)
M: guinea-pigs (aka cavia)
N: neanderthal man (aka homo sapiens neanderthalensis)
O: None of the above. | [D; G; G] |
<Instruct>: Given the context 'In the present study, Ascaris from pigs was used to study molecules abundantly transcribed in the infective third-stage larva (L3).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: suidae (pigs (aka suidae))
B: sus scrofa domesticus (sus scrofa domestica) (aka sus scrofa domesticus)
C: gallus
D: sus scrofa (pigs (aka sus scrofa))
E: guinea-pigs (aka cavia)
F: None of the above. | [D] |
<Instruct>: Given the context 'Following the oral ingestion of Ascaris eggs by the host (human or pig), L3s are released and then invade/penetrate predominantly the caecal wall', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; pig]
<Options>: A: birds (aka aves)
B: sus scrofa domesticus (sus scrofa domestica) (aka sus scrofa domesticus)
C: homo (humans) (aka homo)
D: wild boar (aka sus scrofa)
E: animals (aka metazoa)
F: human (aka homo sapiens)
G: gallus
H: chickens (aka gallus gallus)
I: bovidae
J: species
K: None of the above. | [F; D] |
<Instruct>: Given the context 'Following the oral ingestion of Ascaris eggs by the host (human or pig), L3s are released and then invade/penetrate predominantly the caecal wall', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; pig]
<Options>: A: pigs (aka sus scrofa) (aka sus scrofa)
B: birds (aka aves)
C: macrobiotus sapiens
D: suidae (pigs (aka suidae))
E: sus domesticus (aka sus scrofa domesticus)
F: species
G: homo sapiens (human) (aka homo sapiens)
H: gallus
I: mus porcellus (aka cavia porcellus)
J: mammals (aka mammalia)
K: None of the above. | [G; A] |
<Instruct>: Given the context 'Here, we constructed an L3-enriched cDNA library using the method of suppressive-subtractive hybridization (SSH), explored transcription of a representative subset of molecules by microarray analysis and conducted bioinformatic analyses to characterize these molecules, map them to biochemical pathways and predict genetic interactions based on comparisons with C. elegans and/or other organisms.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis vulgaris (aka caenorhabditis remanei)
B: caromyxa elegans (aka mutinus elegans)
C: uca elegans (aka tubuca elegans)
D: uronema elegans
E: rhabditis elegans (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'Here, we constructed an L3-enriched cDNA library using the method of suppressive-subtractive hybridization (SSH), explored transcription of a representative subset of molecules by microarray analysis and conducted bioinformatic analyses to characterize these molecules, map them to biochemical pathways and predict genetic interactions based on comparisons with C. elegans and/or other organisms.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis vulgaris (aka caenorhabditis remanei)
B: uronema elegans
C: caromyxa elegans (aka mutinus elegans)
D: uca elegans (aka tubuca elegans)
E: None of the above. | [E] |
<Instruct>: Given the context 'Materials and Methods
Production of Different Developmental Stages of Ascaris
Experimental pigs (8–12 weeks of age) were purchased from and maintained in the Experimental Animal Center of South China Agricultural University.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: gallus
B: pigs (aka suidae) (aka suidae)
C: guinea-pigs (aka cavia)
D: wild boar (aka sus scrofa)
E: sus domesticus (aka sus scrofa domesticus)
F: None of the above. | [D] |
<Instruct>: Given the context 'These pigs were treated humanely, according to the Animal Ethics procedures and guidelines of the People's Republic of China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: guinea-pigs (aka cavia)
B: wild boar (aka sus scrofa)
C: sus domestica (aka sus scrofa domesticus)
D: mus porcellus (aka cavia porcellus)
E: pigs (aka suidae) (aka suidae)
F: None of the above. | [B] |
<Instruct>: Given the context 'Adult worms (males and females) of A. suum were collected from the small intestines of pigs from an abattoir in Shenzhen, China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; pigs]
<Options>: A: paracoccus suum
B: actinobacillus suis
C: pigs (aka suidae) (aka suidae)
D: gallus domesticus (aka gallus gallus)
E: aerococcus suis
F: swine (aka sus scrofa)
G: maratus suae
H: sus domestica (aka sus scrofa domesticus)
I: gallus
J: guinea-pigs (aka cavia)
K: None of the above. | [K; F] |
<Instruct>: Given the context 'Adult worms (males and females) of A. suum were collected from the small intestines of pigs from an abattoir in Shenzhen, China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; pigs]
<Options>: A: sus domesticus (aka sus scrofa domesticus)
B: suillus
C: suillia
D: sueus
E: pigs (aka suidae) (aka suidae)
F: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
G: guinea-pigs (aka cavia)
H: mus porcellus (aka cavia porcellus)
I: pigs (aka sus scrofa) (aka sus scrofa)
J: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
K: None of the above. | [K; I] |
<Instruct>: Given the context 'Infective eggs and infective L3s of A. suum were produced according to the methods described previously [38].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: actinobacillus suis
B: maratus suae
C: suillia
D: suaeda fruticosa mult. auct. (aka suaeda vera)
E: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
F: None of the above. | [F] |
<Instruct>: Given the context 'In brief, eggs from the uteri of adult females of A. suum were collected and incubated at 28°C for 28 days to allow them to develop to infective eggs (containing infective L3s).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: eubacterium suis (aka actinobaculum suis)
B: pigs (aka suidae) (aka suidae)
C: maratus suae
D: suillus indica (aka suillus indicus)
E: aerococcus suis
F: None of the above. | [F] |
<Instruct>: Given the context 'Following the experimental infection of helminth-free pigs with infective Ascaris eggs as described previously [39], the L3s from livers and in lungs as well as L4s in intestines were isolated according to an established method [40].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pigs]
<Options>: A: domestic guinea pig (aka cavia porcellus)
B: gallus
C: guinea-pigs (aka cavia)
D: pigs (aka sus scrofa) (aka sus scrofa)
E: chickens (aka gallus gallus)
F: None of the above. | [D] |
<Instruct>: Given the context 'Construction of the cDNA Library by Subtractive-Suppressive Hybridization (SSH)
Total RNA was isolated from adult females and males, different larval stages or eggs of A. suum using TriPure reagent (Roche) as recommended by the manufacturer.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suaeda fruticosa mult. auct. (aka suaeda vera)
B: sueus
C: suillia
D: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
E: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
F: None of the above. | [F] |
<Instruct>: Given the context 'The cDNA obtained following SSH was cloned into the pGEM-T Easy plasmid vector (Promega) and competent Escherichia coli (JM109) transformed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
B: bacteria (ex cavalier-smith 1987) (aka bacteria)
C: enterobacteriaceae bacterium
D: e. coli (aka escherichia coli)
E: enterobacterales (enterobacteriaceae and related endosymbionts) (aka enterobacterales)
F: None of the above. | [D] |
<Instruct>: Given the context 'Sixteen blanks (using spotting solution only) and the same number of negative (irrelevant cDNAs with no relationship to Ascaris) were also printed on to slides and served as negative controls; β-actin of A. suum served as a positive control to assess the efficiency of labeling and hybridization.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suaeda vera (suaeda fruticosa mult. auct.) (aka suaeda vera)
B: pigs (aka suidae) (aka suidae)
C: suillia
D: sueus
E: paracoccus suum
F: None of the above. | [F] |
<Instruct>: Given the context 'Labeling of cDNA Probes with Fluorescent Dyes, and Microarray Analysis
The cDNAs produced from total RNA from A. suum eggs, infective L3s, L3s isolated from pig liver or lung, fourth-stage larvae (L4s), adult males or females [as described in the section ‘Construction of the cDNA Library by Subtractive-Suppressive Hybridization (SSH)’] were labeled with cyanine dyes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; pig]
<Options>: A: maratus suae
B: gallus
C: paracoccus suum
D: sueus
E: actinobacillus suis
F: gallus domesticus (aka gallus gallus)
G: suina (suiformes) (aka suina)
H: domestic guinea pig (aka cavia porcellus)
I: sus domesticus (aka sus scrofa domesticus)
J: pigs (aka sus scrofa) (aka sus scrofa)
K: None of the above. | [K; J] |
<Instruct>: Given the context 'Labeling of cDNA Probes with Fluorescent Dyes, and Microarray Analysis
The cDNAs produced from total RNA from A. suum eggs, infective L3s, L3s isolated from pig liver or lung, fourth-stage larvae (L4s), adult males or females [as described in the section ‘Construction of the cDNA Library by Subtractive-Suppressive Hybridization (SSH)’] were labeled with cyanine dyes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; pig]
<Options>: A: suina (suiformes) (aka suina)
B: sus domestica (aka sus scrofa domesticus)
C: bovidae
D: suillus
E: paracoccus suum
F: suillus indicus (suillus indica) (aka suillus indicus)
G: suidae (pigs (aka suidae))
H: sus scrofa (pigs (aka sus scrofa))
I: suaeda vera (suaeda fruticosa mult. auct.) (aka suaeda vera)
J: mus porcellus (aka cavia porcellus)
K: None of the above. | [K; H] |
<Instruct>: Given the context 'Microarray slides were incubated with a pre-hybridization solution [5×SSC, 1% bovine serum albumin (BSA), 0.1% sodium dodecyl-sulphate (SDS)] for 6 h at 42°C.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bovine]
<Options>: A: bos bovis (aka bos taurus)
B: bovidae
C: bos bubalis bubalis (aka bubalus bubalis bubalis)
D: bovinae
E: cattle (aka bos)
F: None of the above. | [A] |
<Instruct>: Given the context 'Double-stranded cDNA was synthesized from total RNA (separately) from each stage or sex of A. suum using reverse transcriptase (Superscript III, Invitrogen).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillus indica (aka suillus indicus)
B: suiformes (aka suina)
C: actinobacillus suis
D: suidae (pigs (aka suidae))
E: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
F: None of the above. | [F] |
<Instruct>: Given the context 'The PCR amplification of a portion (209 bp) of the β-actin gene (accession no. BI594141) using forward primer (5′-CTCGAAACAAGAATACGATG-3′) and reverse primer (5′- ACATGTGCCGTTGTATGATG-3′), previously determined to be present in all developmental stages and both sexes of A. suum', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: aerococcus suis
B: suarius
C: suaeda vera (suaeda fruticosa mult. auct.) (aka suaeda vera)
D: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
E: actinomyces suis (aka actinobaculum suis)
F: None of the above. | [F] |
<Instruct>: Given the context 'Following the processing of the sequences (i.e., removal of vector sequences, quality assurance and clustering), contigs or singletons from individual clusters were subjected to BLASTx (NCBI: www.ncbi.nlm.nih.gov) and BLASTn (EMBL-EBI Parasite Genome Blast Server: www.ebi.ac.uk) analysis to identify putative homologues in C. elegans, other nematodes and other organisms (e-value of ≤1e-05).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
B: enyo elegans (aka zodarion elegans)
C: bactris elegans
D: caenorhabditis
E: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
F: None of the above. | [A] |
<Instruct>: Given the context 'Following the processing of the sequences (i.e., removal of vector sequences, quality assurance and clustering), contigs or singletons from individual clusters were subjected to BLASTx (NCBI: www.ncbi.nlm.nih.gov) and BLASTn (EMBL-EBI Parasite Genome Blast Server: www.ebi.ac.uk) analysis to identify putative homologues in C. elegans, other nematodes and other organisms (e-value of ≤1e-05).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis
B: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
C: bactris elegans
D: enyo elegans (aka zodarion elegans)
E: None of the above. | [E] |
<Instruct>: Given the context 'WormBase (www.wormbase.org) was interrogated extensively for relevant information on C. elegans homologues/orthologues, including RNAi phenotypic, transcriptomic, proteomic and interactomic data.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
B: enyo elegans (aka zodarion elegans)
C: elegans subgroup (in: mosquitos)
D: caenorhabditis vulgaris (aka caenorhabditis remanei)
E: rhabditis elegans (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'ESTs with homologues/orthologues in C. elegans and other nematodes were also subjected to analysis employing the KEGG Orthology-Based Annotation System (KOBAS) (www.kobas.cbi.pku.edu.cn), which predicts the biochemical pathways in which molecules are involved.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis vulgaris (aka caenorhabditis remanei)
B: myzomyia elegans (aka anopheles elegans)
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: elegans subgroup (in: mosquitos)
E: drosophila elegans
F: None of the above. | [C] |
<Instruct>: Given the context 'The open reading frames (ORFs) inferred from selected ESTs with orthologues in C. elegans were also subjected to “secretome analysis” using the program SignalP v.2.0 www.cbs.dtu.dk/services/SignalP/), employing both the neural network and hidden Markov models to predict signal peptides and/or anchors [46]–[48].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: uronema elegans
B: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
C: caenorhabditis
D: theocolax elegans
E: elegans subgroup (in: mosquitos)
F: None of the above. | [B] |
<Instruct>: Given the context 'The method established by Zhong and Sternberg [53] was used to predict the interactions for C. elegans orthologues of the L3-enriched molecules from Ascaris.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: elegans subgroup (in: flies)
B: elegans subgroup (in: mosquitos)
C: uca elegans (aka tubuca elegans)
D: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
E: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: saccharomyces sp.
B: homo sapiens (human) (aka homo sapiens)
C: biota (aka cellular organisms)
D: placental mammals (aka eutheria)
E: diptera (flies) (aka diptera)
F: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
G: mice (aka mus sp.) (aka mus sp.)
H: drosophila (aka drosophila <basidiomycete fungi>)
I: mus <subgenus> (mus (aka mus <subgenus>))
J: animals (aka metazoa)
K: saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (aka saccharomyces cerevisiae)
L: saccharomyces albicans (aka candida albicans)
M: saccharomycodes
N: fruit fly (aka drosophila melanogaster)
O: mouse (aka mus <genus>)
P: mammals (aka mammalia)
Q: saccharomyces cf. cerevisiae
R: lepidoptera (butterflies and moths) (aka lepidoptera)
S: mouse (aka mus musculus)
T: drosophila (aka drosophila <flies,subgenus>)
U: None of the above. | [N; K; S; B] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: mus musculus (house mouse) (aka mus musculus)
B: fruit fly (aka drosophila melanogaster)
C: peromyscus
D: drosophila <basidiomycete fungi> (drosophila) (aka drosophila <basidiomycete fungi>)
E: human (aka homo sapiens)
F: baker's yeast (aka saccharomyces cerevisiae)
G: primate (aka primates)
H: biota (aka cellular organisms)
I: saccharomyces cerevisiae x saccharomyces mikatae
J: mus (aka mus <subgenus>) (aka mus <subgenus>)
K: mus cricetus (aka cricetus cricetus)
L: saccharomycodes
M: mouse (aka mus <genus>)
N: species
O: saccharomyces albicans (aka candida albicans)
P: saccharomyces sp.
Q: flies (aka diptera)
R: homo (humans) (aka homo)
S: bactrocera melanogaster (bactrocera (bactrocera) melanogaster) (aka bactrocera melanogaster)
T: drosophila <flies,subgenus> (drosophila) (aka drosophila <flies,subgenus>)
U: None of the above. | [B; F; A; E] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: drosophila <flies,genus> (fruit flies) (aka drosophila <flies,genus>)
B: true yeasts (aka saccharomycotina)
C: peromyscus
D: baker's yeast (aka saccharomyces cerevisiae)
E: candida/saccharomycetales (aka candida/saccharomycales clade)
F: bactrocera melanogaster (bactrocera (bactrocera) melanogaster) (aka bactrocera melanogaster)
G: genus
H: homo (humans) (aka homo)
I: mus cricetus (aka cricetus cricetus)
J: saccharomyces cf. cerevisiae
K: probles
L: fruit fly (aka drosophila melanogaster)
M: saccharomyces sp.
N: suborder
O: diptera (flies) (aka diptera)
P: bactrocera (aka bactrocera <genus>)
Q: mice (aka mus sp.) (aka mus sp.)
R: house mouse (aka mus musculus)
S: human (aka homo sapiens)
T: mus musculus domesticus (western european house mouse) (aka mus musculus domesticus)
U: None of the above. | [L; D; R; S] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: genus
B: saccharomycetes (hemiascomycetes) (aka saccharomycetes)
C: drosophila <flies,subgenus> (drosophila) (aka drosophila <flies,subgenus>)
D: saccharomycodes
E: mice (aka mus <genus>) (aka mus <genus>)
F: suborder
G: mus (aka mus <subgenus>) (aka mus <subgenus>)
H: saccharomyceta
I: homo sapiens (human) (aka homo sapiens)
J: melanogaster <flies> (melanogaster) (aka melanogaster <flies>)
K: species
L: brewer's yeast (aka saccharomyces cerevisiae)
M: bactrocera <genus> (bactrocera) (aka bactrocera <genus>)
N: saccharomyces cf. cerevisiae
O: flies (aka diptera)
P: western european house mouse (aka mus musculus domesticus)
Q: biota (aka cellular organisms)
R: peromyscus
S: mouse (aka mus musculus)
T: fruit fly (aka drosophila melanogaster)
U: None of the above. | [T; L; S; I] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [fruitfly; yeast; mouse; human]
<Options>: A: mus (aka mus <subgenus>) (aka mus <subgenus>)
B: melanogaster <flies> (melanogaster) (aka melanogaster <flies>)
C: saccharomycodes
D: saccharomyceta
E: fruit fly (aka drosophila melanogaster)
F: mice (aka mus <genus>) (aka mus <genus>)
G: homo sapiens (human) (aka homo sapiens)
H: suborder
I: biota (aka cellular organisms)
J: genus
K: saccharomyces cf. cerevisiae
L: bactrocera <genus> (bactrocera) (aka bactrocera <genus>)
M: species
N: western european house mouse (aka mus musculus domesticus)
O: peromyscus
P: flies (aka diptera)
Q: saccharomycetes (hemiascomycetes) (aka saccharomycetes)
R: drosophila <flies,subgenus> (drosophila) (aka drosophila <flies,subgenus>)
S: brewer's yeast (aka saccharomyces cerevisiae)
T: None of the above. | [E; S; T; G] |
<Instruct>: Given the context 'In brief, interaction, phenotypic, expression and gene ontology data from fruitfly, yeast, mouse and human were integrated using a naïve Bayesian model to predict genetic interactions among C. elegans genes ([45],[53]; Zhong and Sternberg, unpublished).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: enyo elegans (aka zodarion elegans)
B: drosophila elegans
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: uca elegans (aka tubuca elegans)
E: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'Results
To identify molecules transcribed abundantly in the L3 of A. suum, an enriched cDNA library was constructed by SSH.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillia
B: suarius
C: actinobacillus suis
D: paracoccus suum
E: sueus
F: None of the above. | [F] |
<Instruct>: Given the context 'Of the 2671 (duplicate) spots, 1526 had a significant difference in hybridization between infective L3 cDNA and cDNAs from all other stages or sexes of A. suum, of which 515 had a >2.0-fold increased hybridization for the L3.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suillia
B: suiformes (aka suina)
C: suarius
D: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
E: sueus
F: None of the above. | [F] |
<Instruct>: Given the context 'Of 56 molecules (61.5%) with significant similarity to sequences other than A. suum in the databases interrogated, 50 (54.9%) had C. elegans or C. briggsae homologues, and six had similarity to ESTs already sequenced from ascaridoid and/or other parasitic nematodes, and/or other organisms (Table 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; c. elegans; c. briggsae]
<Options>: A: rasbora brigittae (aka boraras brigittae)
B: caenorhabditis briggsae (rhabditis briggsae) (aka caenorhabditis briggsae)
C: suillia
D: [candida] broadrunensis (candida broadrunensis) (aka [candida] broadrunensis)
E: elegans subgroup (in: flies)
F: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
G: bactris elegans
H: sabacon briggsi
I: elegans subgroup (in: mosquitos)
J: suillus indica (aka suillus indicus)
K: briggsus
L: suina (suiformes) (aka suina)
M: aerococcus suis
N: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
O: uronema elegans
P: None of the above. | [P; N; B] |
<Instruct>: Given the context 'Of 56 molecules (61.5%) with significant similarity to sequences other than A. suum in the databases interrogated, 50 (54.9%) had C. elegans or C. briggsae homologues, and six had similarity to ESTs already sequenced from ascaridoid and/or other parasitic nematodes, and/or other organisms (Table 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; c. elegans; c. briggsae]
<Options>: A: drosophila elegans
B: [candida] broadrunensis (candida broadrunensis) (aka [candida] broadrunensis)
C: suidae (pigs (aka suidae))
D: suiformes (aka suina)
E: trichomycterus brigadeirensis
F: theocolax elegans
G: myzomyia elegans (aka anopheles elegans)
H: pseudochaetosphaeronema briggsiae
I: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
J: aerococcus suis
K: paracoccus suum
L: [candida] gorgasii (candida gorgasii) (aka [candida] gorgasii)
M: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
N: rhabditis briggsae (aka caenorhabditis briggsae)
O: uca elegans (aka tubuca elegans)
P: None of the above. | [P; M; N] |
<Instruct>: Given the context 'Of 56 molecules (61.5%) with significant similarity to sequences other than A. suum in the databases interrogated, 50 (54.9%) had C. elegans or C. briggsae homologues, and six had similarity to ESTs already sequenced from ascaridoid and/or other parasitic nematodes, and/or other organisms (Table 1).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum; c. elegans; c. briggsae]
<Options>: A: cryptococcus neoformans var. grubii x cryptococcus neoformans var. neoformans
B: theocolax elegans
C: enyo elegans (aka zodarion elegans)
D: rhabditis briggsae (aka caenorhabditis briggsae)
E: maratus suae
F: sueus
G: pseudochaetosphaeronema briggsiae
H: suillus
I: caenorhabditis vulgaris (aka caenorhabditis remanei)
J: suarius
K: carinogammarinae
L: suina (suiformes) (aka suina)
M: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
N: briggsus
O: caromyxa elegans (aka mutinus elegans)
P: None of the above. | [P; M; D] |
<Instruct>: Given the context 'Comparative analysis specifically against A. suum EST data sets (n∼42,000) available in public databases confirmed independently that the majority of molecules (>60%) were present exclusively in the infective L3 stage or were orphans.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: aerococcus suis
B: sueus
C: suillus
D: suillia
E: suillus suilloides (gastroboletus suilloides) (aka suillus suilloides)
F: None of the above. | [F] |
<Instruct>: Given the context '[54], this approach was employed to predict the classification and gene function of molecules enriched in infective L3 of A. suum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
B: maratus suae
C: suaeda vera (suaeda fruticosa mult. auct.) (aka suaeda vera)
D: paracoccus suum
E: suarius
F: None of the above. | [F] |
<Instruct>: Given the context 'A focused KOBAS analysis inferred the 50 C. elegans orthologues/homologues to be involved in apoptosis and insulin signaling (2%), ATP synthesis (2%), carbon metabolism (6%), fatty acid biosynthesis (2%), gap junction (2%), glucose metabolism (6%) or porphyrin metabolism (2%), although 34 (68%) of them could not be mapped to a specific metabolic pathway (Table 2).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis sp.
B: myzomyia elegans (aka anopheles elegans)
C: elegans subgroup (in: mosquitos)
D: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
E: rhabditis elegans (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'Functionally, 17 (34%) of the 50 molecules were associated with (non-wild-type) RNAi phenotypes in C. elegans, the majority displaying embryonic lethality (Emb) (13 types; 58.8%), larval arrest (Lva) (23.5%) and larval lethality (Lvl) (47%) (Table 2).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: elegans subgroup (in: mosquitos)
B: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
C: caromyxa elegans (aka mutinus elegans)
D: cyclostrongylus elegans
E: rhabditis elegans (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'Extending this analysis, a relatively complex genetic interaction network was predicted for the 17 C. elegans orthologues (i.e., with non-wild-type RNAi phenotypes) (see Table S2).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
B: drosophila elegans
C: rhabditis elegans (aka caenorhabditis elegans)
D: uronema elegans
E: bactris elegans
F: None of the above. | [C] |
<Instruct>: Given the context 'Statistically highly significant interactions were predicted for nine of the C. elegans genes; the top five interactors are displayed in Fig.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: uronema elegans
B: caenorhabditis vulgaris (aka caenorhabditis remanei)
C: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
D: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
E: uca elegans (aka tubuca elegans)
F: None of the above. | [D] |
<Instruct>: Given the context 'The gene ontology categories for eight selected C. elegans genes (F33D11.10, F55A12.8, kin-2, mec-12, mup-2, pab-1, rpl-22 and T21B10.2) included: embryonic development, egg hatching, larval development and/or growth.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: rhabditis elegans (aka caenorhabditis elegans)
B: cyclostrongylus elegans
C: caenorhabditis sp.
D: caenorhabditis
E: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
F: None of the above. | [A] |
<Instruct>: Given the context 'The C. elegans homologue egl-3 was predicted to be involved in proteolysis (see www.wormbase.org).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: myzomyia elegans (aka anopheles elegans)
B: drosophila elegans
C: caenorhabditis sp.
D: rhabditis elegans (aka caenorhabditis elegans)
E: theocolax elegans
F: None of the above. | [D] |
<Instruct>: Given the context 'The C. elegans homologue egl-3 was predicted to be involved in proteolysis (see www.wormbase.org).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: myzomyia elegans (aka anopheles elegans)
B: caenorhabditis sp.
C: theocolax elegans
D: drosophila elegans
E: None of the above. | [E] |
<Instruct>: Given the context 'All nine C. elegans orthologues were predicted to interact directly with a total of 296 (range: 5–75) other genes and, in particular, a direct genetic interaction was predicted between pab-1 and T21B10.2 (Fig. 2).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: cyclostrongylus elegans
B: uronema elegans
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
E: caromyxa elegans (aka mutinus elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'Discussion
The present study investigated transcripts in infective L3s of A. suum using a genomic-bioinformatic platform.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: pigs (aka suidae) (aka suidae)
B: actinobacillus suis
C: suiformes (aka suina)
D: suaeda fruticosa mult. auct. (aka suaeda vera)
E: suillus indica (aka suillus indicus)
F: None of the above. | [F] |
<Instruct>: Given the context 'The focus was on comparisons with C. elegans homologues/orthologues, because the entire genome sequence of this nematode is known [9] and because there is a wealth of information on the localization and functionality of its molecules (www.wormbase.org; http://elegans.bcgsc.bc.ca/knockout.shtml).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: uca elegans (aka tubuca elegans)
B: drosophila elegans
C: myzomyia elegans (aka anopheles elegans)
D: rhabditis elegans (aka caenorhabditis elegans)
E: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
F: None of the above. | [D] |
<Instruct>: Given the context 'The functions of most genes in C. elegans have been assessed using RNAi (e.g., [14],[15],[17],[55],[56]) in the hermaphroditic stage, whereas there is a paucity of functional information available for Ascaris and other parasitic nematodes of animals', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: drosophila elegans
B: rhabditis elegans (aka caenorhabditis elegans)
C: elegans subgroup (in: flies)
D: caenorhabditis
E: caromyxa elegans (aka mutinus elegans)
F: None of the above. | [B] |
<Instruct>: Given the context 'Of the 91 clusters of molecules categorized, 50 (54.9%) had C. elegans homologues/orthologues with loss-of-function phenotypes could be mapped to key pathways.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
B: elegans subgroup (in: mosquitos)
C: theocolax elegans
D: bactris elegans
E: myzomyia elegans (aka anopheles elegans)
F: None of the above. | [A] |
<Instruct>: Given the context 'The statistically significant genetic interactions predicted for 9 of the 50 C. elegans orthologues [namely egl-3, F33D11.10, F55A12.8, kin-2, mec-12, mup-2, pab-1, rpl-22 and T21B10.2 ( = enol-1)] and the interaction network included genes encoding kinases, alpha-tubulins, enolases, troponin and other named and unnamed proteins.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: elegans subgroup (in: mosquitos)
B: caenorhabditis
C: uronema elegans
D: myzomyia elegans (aka anopheles elegans)
E: rhabditis elegans (aka caenorhabditis elegans)
F: None of the above. | [E] |
<Instruct>: Given the context 'Eight of these molecules (enol-1, pab-1, F33D11.10, rpl-22, F55A12.8 mec-12, mup-2 and kin-2) have known or predicted roles in embryonic and larval growth and development, gamete generation, locomotory behaviour or other biological processes in C. elegans (see www.wormbase.org).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
B: caenorhabditis
C: elegans subgroup (in: flies)
D: caenorhabditis sp.
E: urocitellus elegans elegans (spermophilus elegans elegans) (aka urocitellus elegans elegans)
F: None of the above. | [A] |
<Instruct>: Given the context 'Nonetheless, enolases are often detected in the excretory/secretory (ES) products of parasitic helminths, including adult A. suum', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. suum]
<Options>: A: sueus
B: suaeda salsa (suaeda maritima subsp. salsa) (aka suaeda salsa)
C: suillus indica (aka suillus indicus)
D: actinobacillus suis
E: suarius
F: None of the above. | [F] |
<Instruct>: Given the context 'The enol-1 orthologue of C. elegans has been predicted to interact specifically with the polyadenylate binding protein gene, pab-1, inferred to be involved in coordinated gene transcription and expression during normal larval development', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: gongylostoma elegans elegans (clausilia elegans elegans) (aka gongylostoma elegans elegans)
B: cyclostrongylus elegans
C: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
D: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
E: myzomyia elegans (aka anopheles elegans)
F: None of the above. | [C] |
<Instruct>: Given the context 'Present evidence suggests that the expression of PAB-1 is regulated by an oligo-pyrimidine tract in response to cell growth and relates to coordinated growth regulation in C. elegans [62].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: theocolax elegans
B: uca elegans (aka tubuca elegans)
C: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
D: caenorhabditis elegans (rhabditis elegans) (aka caenorhabditis elegans)
E: elegans subgroup (in: mosquitos)
F: None of the above. | [D] |
<Instruct>: Given the context 'Present evidence suggests that the expression of PAB-1 is regulated by an oligo-pyrimidine tract in response to cell growth and relates to coordinated growth regulation in C. elegans [62].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. elegans]
<Options>: A: elegans subgroup (in: mosquitos)
B: theocolax elegans
C: caenorhabditis drosophilae (rhabditis drosophilae) (aka caenorhabditis drosophilae)
D: uca elegans (aka tubuca elegans)
E: None of the above. | [E] |
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