query stringlengths 53 100 | positive listlengths 1 5 | negative listlengths 1 4 | system stringlengths 68 790 |
|---|---|---|---|
What is the biomedical concept corresponding to 'ustilago maydis'? | [
"ustilago maydis (mycosarcoma maydis)",
"mycosarcoma maydis (ustilago maydis)",
"uredo maydis (mycosarcoma maydis)",
"corn smut (mycosarcoma maydis)"
] | [
"ustilago avenae (ustilago aegilopsidis)",
"ustilago aegilopsidis (ustilago avenae)",
"ustilago nigra (ustilago avenae)",
"ustilago vinosa"
] | Given the context 'Molecular analysis revealed that the gene responsible for the phenotypes, designated Cc.ubc2, encodes a protein similar to Ubc2, an adaptor protein for filamentous growth, pheromone response and virulence in the smut fungus Ustilago maydis.', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcus pneumoniae'? | [
"streptococcus pneumoniae (diplococcus pneumoniae)",
"micrococcus pneumoniae (streptococcus pneumoniae)",
"diplococcus pneumoniae (streptococcus pneumoniae)"
] | [
"streptococcus parasuis",
"streptococcus pasteuri ('streptococcus pasteuri')",
"'streptococcus pasteuri' (streptococcus pasteuri)",
"streptococcus hemolyticus (streptococcus pyogenes)"
] | Given the context 'Genome annotation and intraviral interactome for the Streptococcus pneumoniae virulent phage Dp-1.
Streptococcus pneumoniae causes several diseases, including pneumonia, septicemia, and meningitis.', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcus pneumoniae'? | [
"streptococcus pneumoniae (diplococcus pneumoniae)",
"micrococcus pneumoniae (streptococcus pneumoniae)",
"diplococcus pneumoniae (streptococcus pneumoniae)"
] | [
"streptococcus parasuis",
"streptococcus pasteuri ('streptococcus pasteuri')",
"'streptococcus pasteuri' (streptococcus pasteuri)",
"streptococcus hemolyticus (streptococcus pyogenes)"
] | Given the context 'Genome annotation and intraviral interactome for the Streptococcus pneumoniae virulent phage Dp-1.
Streptococcus pneumoniae causes several diseases, including pneumonia, septicemia, and meningitis.', answer the user's query. |
What is the biomedical concept corresponding to 's. pneumoniae'? | [
"streptococcus pneumoniae (diplococcus pneumoniae)",
"diplococcus pneumoniae (streptococcus pneumoniae)",
"micrococcus pneumoniae (streptococcus pneumoniae)"
] | [
"streptococcus hemolyticus (streptococcus pyogenes)",
"streptococcus parasuis",
"streptococcus pyogenes (streptococcus erysipelatos)",
"bacillus pneumoniae (klebsiella pneumoniae)"
] | Given the context 'Phage Dp-1 is one of the very few isolated virulent S. pneumoniae bacteriophages, but only a partial characterization is currently available.', answer the user's query. |
What is the biomedical concept corresponding to 'leavenworthia crassa'? | [
"leavenworthia crassa"
] | [
"lepidium crassum",
"leonia crassa",
"lulworthia crassa (kohlmeyeriella crassa)",
"tryella crassa"
] | Given the context 'Possible contributions of TERMINAL FLOWER 1 to the evolution of rosette flowering in Leavenworthia (Brassicaceae).
Leavenworthia crassa is a rosette flowering species that differs from inflorescence flowering species, such as Arabidopsis thaliana, in having elongated pedicels and shortened interfloral internodes on the main axis.', answer the user's query. |
What is the biomedical concept corresponding to 'arabidopsis thaliana'? | [
"arabidopsis thaliana (mouse-ear cress)",
"arabis thaliana (arabidopsis thaliana)"
] | [
"arabis lyrata (arabidopsis lyrata)",
"euxoa agricola (noctua agricola)",
"noctua agricola (euxoa agricola)",
"plantago africana"
] | Given the context 'Possible contributions of TERMINAL FLOWER 1 to the evolution of rosette flowering in Leavenworthia (Brassicaceae).
Leavenworthia crassa is a rosette flowering species that differs from inflorescence flowering species, such as Arabidopsis thaliana, in having elongated pedicels and shortened interfloral internodes on the main axis.', answer the user's query. |
What is the biomedical concept corresponding to 'a. thaliana'? | [
"arabidopsis thaliana (mouse-ear cress)",
"arabis thaliana (arabidopsis thaliana)"
] | [
"euxoa agricola (noctua agricola)",
"noctua agricola (euxoa agricola)",
"arabis lyrata (arabidopsis lyrata)",
"amaranthus aureus"
] | Given the context 'We isolated LcrTFL1 and introduced a genomic construct into tfl1 mutant A. thaliana plants.', answer the user's query. |
What is the biomedical concept corresponding to 'a. thaliana'? | [
"arabidopsis thaliana (mouse-ear cress)",
"arabis thaliana (arabidopsis thaliana)"
] | [
"euxoa agricola (noctua agricola)",
"noctua agricola (euxoa agricola)",
"arabis lyrata (arabidopsis lyrata)",
"amaranthus aureus"
] | Given the context 'Our data show that there are substantive differences in the regulation and/or function of TFL1 orthologs between A. thaliana and L. crassa.', answer the user's query. |
What is the biomedical concept corresponding to 'l. crassa'? | [
"leavenworthia crassa"
] | [
"lepidium crassum",
"leonia crassa",
"columnea crassa",
"climacoptera crassa"
] | Given the context 'Our data show that there are substantive differences in the regulation and/or function of TFL1 orthologs between A. thaliana and L. crassa.', answer the user's query. |
What is the biomedical concept corresponding to 'lotus creticus'? | [
"lotus creticus (lotus commutatus)",
"lotus commutatus (lotus creticus)"
] | [
"lotus pseudo-creticus (lotus pseudocreticus)",
"lotus pseudocreticus (lotus pseudo-creticus)",
"lotus corniculatus",
"lotus glareosus"
] | Given the context 'Here, we used a combination of ionomic and gas chromatography-mass spectrometry (GC-MS)-based metabolite profilings of complete shoots (pooling leaves, petioles and stems) to compare the extremophile Lotus creticus, adapted to highly saline coastal regions, and two cultivated glycophytic grassland forage species, Lotus corniculatus and Lotus tenuis.', answer the user's query. |
What is the biomedical concept corresponding to 'lotus corniculatus'? | [
"lotus corniculatus"
] | [
"lotus latifolius",
"lotus hamatus",
"lotus lanuginosus",
"lotus conjugatus"
] | Given the context 'Here, we used a combination of ionomic and gas chromatography-mass spectrometry (GC-MS)-based metabolite profilings of complete shoots (pooling leaves, petioles and stems) to compare the extremophile Lotus creticus, adapted to highly saline coastal regions, and two cultivated glycophytic grassland forage species, Lotus corniculatus and Lotus tenuis.', answer the user's query. |
What is the biomedical concept corresponding to 'lotus tenuis'? | [
"lotus glaber (lotus tenuis)",
"lotus tenuis (slender trefoil)",
"slender trefoil (lotus tenuis)"
] | [
"cliona tenuis",
"lotus tenellus (pedrosia tenella)",
"goera tenuis",
"trigonotylus tenuis"
] | Given the context 'Here, we used a combination of ionomic and gas chromatography-mass spectrometry (GC-MS)-based metabolite profilings of complete shoots (pooling leaves, petioles and stems) to compare the extremophile Lotus creticus, adapted to highly saline coastal regions, and two cultivated glycophytic grassland forage species, Lotus corniculatus and Lotus tenuis.', answer the user's query. |
What is the biomedical concept corresponding to 'l. creticus'? | [
"lotus creticus (lotus commutatus)",
"lotus commutatus (lotus creticus)"
] | [
"lygaeus creticus",
"lathyrus lycius",
"lactarius aestivus",
"lotus aegaeus"
] | Given the context 'L. creticus exhibited better survival after exposure to long-term lethal salinity and was more efficient at excluding Cl- from the shoots than the glycophytes.', answer the user's query. |
What is the biomedical concept corresponding to 'l. creticus'? | [
"lotus creticus (lotus commutatus)",
"lotus commutatus (lotus creticus)"
] | [
"lygaeus creticus",
"lathyrus lycius",
"lactarius aestivus",
"lotus aegaeus"
] | Given the context 'Metabolite profiling showed that responses to NaCl in L. creticus shoots were globally similar to those of the glycophytes, providing little evidence for metabolic pre-adaptation to salinity.', answer the user's query. |
What is the biomedical concept corresponding to 'type a h1n1'? | [
"influenza a virus (human influenza a virus)",
"human influenza a virus (influenza a virus)",
"influenza virus type a (influenza a virus)",
"fluav (influenza a virus)"
] | [
"influenzavirus a (alphainfluenzavirus)",
"h1n1 swine influenza virus",
"h1n1 subtype (h1n1 (h1n1 subtype))",
"h1n1 (h1n1 subtype) (h1n1 subtype)"
] | Given the context 'Proteotyping to establish the lineage of type A H1N1 and type B human influenza virus.
', answer the user's query. |
What is the biomedical concept corresponding to 'type b human influenza virus'? | [
"influenza b virus (influenza virus type b)",
"influenza virus type b (influenza b virus)",
"flubv (influenza b virus)"
] | [
"human influenza a virus (influenza a virus)",
"influenza a virus (human influenza a virus)",
"influenzavirus b (betainfluenzavirus)",
"influenza virus type a (influenza a virus)"
] | Given the context 'Proteotyping to establish the lineage of type A H1N1 and type B human influenza virus.
', answer the user's query. |
What is the biomedical concept corresponding to 'type a h1n1'? | [
"influenza a virus (human influenza a virus)",
"human influenza a virus (influenza a virus)",
"influenza virus type a (influenza a virus)",
"fluav (influenza a virus)"
] | [
"influenzavirus a (alphainfluenzavirus)",
"h1n1 swine influenza virus",
"h1n1 subtype (h1n1 (h1n1 subtype))",
"h1n1 (h1n1 subtype) (h1n1 subtype)"
] | Given the context 'The ability to establish the lineage of type A H1N1 and type B human influenza virus strains using a new proteotyping approach is demonstrated.', answer the user's query. |
What is the biomedical concept corresponding to 'type b human influenza virus'? | [
"influenza b virus (influenza virus type b)",
"influenza virus type b (influenza b virus)",
"flubv (influenza b virus)"
] | [
"human influenza a virus (influenza a virus)",
"influenza a virus (human influenza a virus)",
"influenzavirus b (betainfluenzavirus)",
"influenza virus type a (influenza a virus)"
] | Given the context 'The ability to establish the lineage of type A H1N1 and type B human influenza virus strains using a new proteotyping approach is demonstrated.', answer the user's query. |
What is the biomedical concept corresponding to 'type a h1n1'? | [
"influenza a virus (human influenza a virus)",
"human influenza a virus (influenza a virus)",
"influenza virus type a (influenza a virus)",
"fluav (influenza a virus)"
] | [
"influenzavirus a (alphainfluenzavirus)",
"h1n1 swine influenza virus",
"h1n1 subtype (h1n1 (h1n1 subtype))",
"h1n1 (h1n1 subtype) (h1n1 subtype)"
] | Given the context 'Lineage-specific signature peptides have been determined for the hemagglutinin antigen of type A H1N1 and type B influenza viruses.', answer the user's query. |
What is the biomedical concept corresponding to 'type b influenza viruses'? | [
"influenza virus type b (influenza b virus)",
"influenza b virus (influenza virus type b)",
"flubv (influenza b virus)"
] | [
"influenzavirus b (betainfluenzavirus)",
"betainfluenzavirus (influenzavirus b)",
"influenza a virus (human influenza a virus)",
"human influenza a virus (influenza a virus)"
] | Given the context 'Lineage-specific signature peptides have been determined for the hemagglutinin antigen of type A H1N1 and type B influenza viruses.', answer the user's query. |
What is the biomedical concept corresponding to 'influenza virus'? | [
"influenza b virus (influenza virus type b)",
"influenza virus type b (influenza b virus)",
"flubv (influenza b virus)"
] | [
"influenza a virus (human influenza a virus)",
"fluav (influenza a virus)",
"human influenza a virus (influenza a virus)",
"influenza virus type a (influenza a virus)"
] | Given the context 'This proteotyping approach complements conventional PCR approaches and should aid in the monitoring of the evolution of the influenza virus in both humans and animals.
', answer the user's query. |
What is the biomedical concept corresponding to 'humans'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"glossus humanus (cardium humanum)"
] | Given the context 'This proteotyping approach complements conventional PCR approaches and should aid in the monitoring of the evolution of the influenza virus in both humans and animals.
', answer the user's query. |
What is the biomedical concept corresponding to 'pea aphid'? | [
"pea aphid (acyrthosiphon pisum)"
] | [
"aphidius avenae",
"peach-potato aphid (myzus persicae)",
"green peach aphid (myzus persicae)",
"black bean aphid (aphis fabae)"
] | Given the context 'Responses of the pea aphid transcriptome to infection by facultative symbionts.
Serratia symbiotica is a facultative symbiont of pea aphids (Acyrthosiphon pisum) that provides tolerance to heat stress.', answer the user's query. |
What is the biomedical concept corresponding to 'serratia symbiotica'? | [
"serratia symbiotica (candidatus serratia symbiotica)",
"candidatus serratia symbiotica (serratia symbiotica)"
] | [
"serratia symbiotica (tuberolachnus salignus)",
"serratia symbiotica (periphyllus acericola)",
"serratia symbiotica (cacopsylla coccinea)",
"serratia symbiotica (epitrioza mizuhonica)"
] | Given the context 'Responses of the pea aphid transcriptome to infection by facultative symbionts.
Serratia symbiotica is a facultative symbiont of pea aphids (Acyrthosiphon pisum) that provides tolerance to heat stress.', answer the user's query. |
What is the biomedical concept corresponding to 'pea aphids'? | [
"pea aphid (acyrthosiphon pisum)"
] | [
"aphids (aphididae)",
"peach-potato aphid (myzus persicae)",
"aphidius avenae",
"green peach aphid (myzus persicae)"
] | Given the context 'Responses of the pea aphid transcriptome to infection by facultative symbionts.
Serratia symbiotica is a facultative symbiont of pea aphids (Acyrthosiphon pisum) that provides tolerance to heat stress.', answer the user's query. |
What is the biomedical concept corresponding to 'acyrthosiphon pisum'? | [
"acyrthosiphon pisum (acyrthosiphum pisum)",
"acyrthosiphum pisum (acyrthosiphon pisum)",
"aphis pisum (acyrthosiphon pisum)",
"pea aphid (acyrthosiphon pisum)"
] | [
"acyrthosiphon gossypii",
"aciagrion migratum (pseudagrion migratum)",
"pseudagrion migratum (aciagrion migratum)",
"pison atrum"
] | Given the context 'Responses of the pea aphid transcriptome to infection by facultative symbionts.
Serratia symbiotica is a facultative symbiont of pea aphids (Acyrthosiphon pisum) that provides tolerance to heat stress.', answer the user's query. |
What is the biomedical concept corresponding to 's. symbiotica'? | [
"serratia symbiotica (candidatus serratia symbiotica)"
] | [
"saphonecrus symbioticus",
"serratia symbiotica (tuberolachnus salignus)",
"serratia symbiotica (epitrioza yasumatsui)",
"serratia symbiotica (cacopsylla coccinea)"
] | Given the context 'Previous studies show a large impact of S. symbiotica upon the aphid metabolome.', answer the user's query. |
What is the biomedical concept corresponding to 'pea aphid'? | [
"pea aphid (acyrthosiphon pisum)"
] | [
"aphidius avenae",
"peach-potato aphid (myzus persicae)",
"green peach aphid (myzus persicae)",
"black bean aphid (aphis fabae)"
] | Given the context 'Whole-genome transcriptional profiling and next-generation sequencing demonstrated expression of 94% of RefSeq genes from the pea aphid genome, providing the largest dataset to date on aphid gene expression.', answer the user's query. |
What is the biomedical concept corresponding to 's. symbiotica'? | [
"serratia symbiotica (candidatus serratia symbiotica)"
] | [
"saphonecrus symbioticus",
"serratia symbiotica (tuberolachnus salignus)",
"serratia symbiotica (epitrioza yasumatsui)",
"serratia symbiotica (cacopsylla coccinea)"
] | Given the context 'However, only 28 genes showed changes in expression with S. symbiotica infection, and these changes were of small magnitude.', answer the user's query. |
What is the biomedical concept corresponding to 's. symbiotica'? | [
"serratia symbiotica (candidatus serratia symbiotica)"
] | [
"saphonecrus symbioticus",
"serratia symbiotica (tuberolachnus salignus)",
"serratia symbiotica (epitrioza yasumatsui)",
"serratia symbiotica (cacopsylla coccinea)"
] | Given the context 'Therefore, the large metabolic impact of S. symbiotica is most likely a result of metabolism of the symbiont itself, or of post-transcriptional modification of host gene expression.', answer the user's query. |
What is the biomedical concept corresponding to 's. symbiotica'? | [
"serratia symbiotica (candidatus serratia symbiotica)"
] | [
"saphonecrus symbioticus",
"serratia symbiotica (tuberolachnus salignus)",
"serratia symbiotica (epitrioza yasumatsui)",
"serratia symbiotica (cacopsylla coccinea)"
] | Given the context 'Although S. symbiotica has a major influence on its host's metabolome and resistance to heat, it induces little change in gene expression in its host.
', answer the user's query. |
What is the biomedical concept corresponding to 'apis cerana cerana'? | [
"apis mellifera cerana (apis cerana)",
"apis cerana (apis mellifera cerana)",
"eastern honeybee (apis cerana)",
"indian honeybee (apis cerana)",
"asiatic honeybee (apis cerana)"
] | [
"apis cerana cerana",
"apis cerana indica (apis indica)",
"european honey bee (apis mellifera)",
"honey bee (apis mellifera)"
] | Given the context 'Molecular cloning and characterization of a thioredoxin peroxidase gene from Apis cerana cerana.
', answer the user's query. |
What is the biomedical concept corresponding to 'apis cerana cerana (acc)'? | [
"apis cerana (apis mellifera cerana)",
"apis mellifera cerana (apis cerana)",
"eastern honeybee (apis cerana)",
"indian honeybee (apis cerana)",
"asiatic honeybee (apis cerana)"
] | [
"apis cerana cerana",
"honey bee (apis mellifera)",
"european honey bee (apis mellifera)",
"honeybee (apis mellifera)"
] | Given the context 'In the present study, we cloned the full cDNA of Tpx1 encoding a 195-amino acid protein from Apis cerana cerana (Acc).', answer the user's query. |
What is the biomedical concept corresponding to 'worker honeybees'? | [
"eastern honeybee (apis cerana)",
"oriental honeybee (apis cerana)",
"asiatic honeybee (apis cerana)",
"indian honeybee (apis cerana)"
] | [
"honeybee (apis mellifera)",
"western honey bee (apis mellifera)",
"european honey bee (apis mellifera)",
"german honeybee (apis mellifera mellifera)"
] | Given the context 'Quantitative PCR analysis showed that AccTpx1 was highly expressed in thorax and that the AccTpx1 transcript reached its highest level in two-week-old adult worker honeybees.', answer the user's query. |
What is the biomedical concept corresponding to 'honeybees'? | [
"eastern honeybee (apis cerana)",
"asiatic honeybee (apis cerana)",
"oriental honeybee (apis cerana)",
"indian honeybee (apis cerana)"
] | [
"honeybee (apis mellifera)",
"honey bee (apis mellifera)",
"european honey bee (apis mellifera)",
"western honey bee (apis mellifera)"
] | Given the context 'These results suggest that AccTpx1 plays an important role in protecting honeybees from oxidative injury and may act in extending the lifespan of them.
', answer the user's query. |
What is the biomedical concept corresponding to 'maize'? | [
"maize (zea mays)",
"zea mays (zea mays var. japonica)"
] | [
"corn earworm (helicoverpa zea)",
"maize (zea mays subsp. mays)",
"zea perennis (perennial teosinte)",
"zea ramosa (zea mays subsp. mays)"
] | Given the context 'Acclimation to high CO2 in maize is related to water status and dependent on leaf rank.
', answer the user's query. |
What is the biomedical concept corresponding to 'maize'? | [
"maize (zea mays)",
"zea mays (zea mays var. japonica)"
] | [
"corn earworm (helicoverpa zea)",
"maize (zea mays subsp. mays)",
"zea perennis (perennial teosinte)",
"zea ramosa (zea mays subsp. mays)"
] | Given the context 'In this study, the effects of atmospheric CO(2) availability on the transcriptome, proteome and metabolome profiles of two ranks of source leaves in maize (Zea mays L.) were studied in plants grown under ambient CO(2) conditions (350 +/- 20 muL L(-1) CO(2) ) or with CO(2) enrichment (700 +/- 20 muL L(-1) CO(2) ).', answer the user's query. |
What is the biomedical concept corresponding to 'zea mays'? | [
"maize (zea mays)",
"zea mays (zea mays var. japonica)",
"zea mays var. japonica (zea mays)"
] | [
"zea ramosa (zea mays subsp. mays)",
"zea perennis (perennial teosinte)",
"corn earworm (helicoverpa zea)",
"zela zeus"
] | Given the context 'In this study, the effects of atmospheric CO(2) availability on the transcriptome, proteome and metabolome profiles of two ranks of source leaves in maize (Zea mays L.) were studied in plants grown under ambient CO(2) conditions (350 +/- 20 muL L(-1) CO(2) ) or with CO(2) enrichment (700 +/- 20 muL L(-1) CO(2) ).', answer the user's query. |
What is the biomedical concept corresponding to 'fagus sylvatica'? | [
"fagus sylvatica (fagus sylvestris)",
"fagus sylvestris (fagus sylvatica)",
"european beech (fagus sylvatica)"
] | [
"fagus americana (fagus grandifolia)",
"fagus grandifolia (fagus americana)",
"fagus moesiaca (fagus taurica)",
"fagus antarctica (nothofagus antarctica)"
] | Given the context 'Seasonal dynamics in the stable carbon isotope composition delta^1^3C from non-leafy branch, trunk and coarse root CO2 efflux of adult deciduous (Fagus sylvatica) and evergreen (Picea abies) trees.
', answer the user's query. |
What is the biomedical concept corresponding to 'picea abies'? | [
"picea excelsa (picea abies)",
"picea abies (pinus abies l.)",
"picea montana (picea abies)",
"norway spruce (picea abies)",
"pinus abies (picea abies)"
] | [
"picea concolor (abies concolor)",
"picea glauca (white spruce)",
"picea lowiana (abies lowiana)",
"picea"
] | Given the context 'Seasonal dynamics in the stable carbon isotope composition delta^1^3C from non-leafy branch, trunk and coarse root CO2 efflux of adult deciduous (Fagus sylvatica) and evergreen (Picea abies) trees.
', answer the user's query. |
What is the biomedical concept corresponding to 'fagus sylvatica'? | [
"fagus sylvatica (fagus sylvestris)",
"fagus sylvestris (fagus sylvatica)",
"european beech (fagus sylvatica)"
] | [
"fagus americana (fagus grandifolia)",
"fagus grandifolia (fagus americana)",
"fagus moesiaca (fagus taurica)",
"fagus antarctica (nothofagus antarctica)"
] | Given the context 'We studied seasonal dynamics in delta^1^3C of CO2 efflux (delta^1^3C(E)) from non-leafy branches, upper and lower trunks and coarse roots of adult trees, comparing deciduous Fagus sylvatica (European beech) with evergreen Picea abies (Norway spruce).', answer the user's query. |
What is the biomedical concept corresponding to 'european beech'? | [
"european beech (fagus sylvatica)"
] | [
"american beech (fagus grandifolia)",
"japanese beech (fagus crenata)",
"european hornbeam (carpinus betulus)",
"beech trees (fagus)"
] | Given the context 'We studied seasonal dynamics in delta^1^3C of CO2 efflux (delta^1^3C(E)) from non-leafy branches, upper and lower trunks and coarse roots of adult trees, comparing deciduous Fagus sylvatica (European beech) with evergreen Picea abies (Norway spruce).', answer the user's query. |
What is the biomedical concept corresponding to 'picea abies'? | [
"picea excelsa (picea abies)",
"picea abies (pinus abies l.)",
"picea montana (picea abies)",
"norway spruce (picea abies)",
"pinus abies (picea abies)"
] | [
"picea concolor (abies concolor)",
"picea glauca (white spruce)",
"picea lowiana (abies lowiana)",
"picea"
] | Given the context 'We studied seasonal dynamics in delta^1^3C of CO2 efflux (delta^1^3C(E)) from non-leafy branches, upper and lower trunks and coarse roots of adult trees, comparing deciduous Fagus sylvatica (European beech) with evergreen Picea abies (Norway spruce).', answer the user's query. |
What is the biomedical concept corresponding to 'norway spruce'? | [
"norway spruce (picea abies)"
] | [
"norway pine (pinus resinosa)",
"red spruce (picea rubens)",
"white spruce (picea glauca)",
"colorado spruce (picea pungens)"
] | Given the context 'We studied seasonal dynamics in delta^1^3C of CO2 efflux (delta^1^3C(E)) from non-leafy branches, upper and lower trunks and coarse roots of adult trees, comparing deciduous Fagus sylvatica (European beech) with evergreen Picea abies (Norway spruce).', answer the user's query. |
What is the biomedical concept corresponding to 'norway spruce'? | [
"norway spruce (picea abies)"
] | [
"norway pine (pinus resinosa)",
"red spruce (picea rubens)",
"white spruce (picea glauca)",
"colorado spruce (picea pungens)"
] | Given the context 'Gene expression changes during short day induced terminal bud formation in Norway spruce.
', answer the user's query. |
What is the biomedical concept corresponding to 'norway spruce'? | [
"norway spruce (picea abies)"
] | [
"norway pine (pinus resinosa)",
"red spruce (picea rubens)",
"white spruce (picea glauca)",
"colorado spruce (picea pungens)"
] | Given the context 'By combining suppression subtractive hybridization and monitoring of gene expression by qRT-PCR analysis, we aimed to identify genes involved in photoperiodic control of growth cessation and bud set in Norway spruce.', answer the user's query. |
What is the biomedical concept corresponding to 'cucumber'? | [
"cucumber (cucumis sativus)",
"cucumbers (cucumis sativus)",
"cucumis sativus (cucumbers)"
] | [
"common cuckoo (cuculus canorus)",
"cuculus canorus (common cuckoo)",
"cucumis",
"cucumber (cucumis sativus var. sativus)"
] | Given the context 'Role of nitric oxide in hydrogen peroxide-dependent induction of abiotic stress tolerance by brassinosteroids in cucumber.
', answer the user's query. |
What is the biomedical concept corresponding to 'cucumber'? | [
"cucumber (cucumis sativus)",
"cucumbers (cucumis sativus)",
"cucumis sativus (cucumbers)"
] | [
"common cuckoo (cuculus canorus)",
"cuculus canorus (common cuckoo)",
"cucumis",
"cucumber (cucumis sativus var. sativus)"
] | Given the context 'Brassinosteroids (BRs) can induce plant tolerance to a variety of abiotic stresses by triggering the generation of H(2) O(2) as a signalling molecule in cucumber leaves.', answer the user's query. |
What is the biomedical concept corresponding to 'honey bee'? | [
"honey bee (apis mellifera)",
"honeybee (apis mellifera)",
"european honey bee (apis mellifera)",
"western honey bee (apis mellifera)",
"apis mellifera (bee (apis mellifera))"
] | [
"eastern honeybee (apis cerana)",
"german honeybee (apis mellifera mellifera)",
"asiatic honeybee (apis cerana)",
"indian honeybee (apis cerana)"
] | Given the context 'Genome-wide analysis of brain transcriptional changes in honey bee (Apis mellifera L.) queens exposed to carbon dioxide and physical manipulation.
', answer the user's query. |
What is the biomedical concept corresponding to 'apis mellifera'? | [
"honeybee (apis mellifera)",
"honey bee (apis mellifera)",
"western honey bee (apis mellifera)",
"apis mellifera (bee (apis mellifera))",
"european honey bee (apis mellifera)"
] | [
"apis mellifera mellifera (german honeybee)",
"eastern honeybee (apis cerana)",
"german honeybee (apis mellifera mellifera)",
"apis cerana (apis mellifera cerana)"
] | Given the context 'Genome-wide analysis of brain transcriptional changes in honey bee (Apis mellifera L.) queens exposed to carbon dioxide and physical manipulation.
', answer the user's query. |
What is the biomedical concept corresponding to 'honey bee'? | [
"honey bee (apis mellifera)",
"honeybee (apis mellifera)",
"european honey bee (apis mellifera)",
"western honey bee (apis mellifera)",
"apis mellifera (bee (apis mellifera))"
] | [
"eastern honeybee (apis cerana)",
"german honeybee (apis mellifera mellifera)",
"asiatic honeybee (apis cerana)",
"indian honeybee (apis cerana)"
] | Given the context 'In the present study we examine the effects of CO(2) (a commonly used anaesthetic in instrumental insemination that causes changes similar to those occurring after mating) and physical manipulation (which may mimic certain aspects of copulation) on the behavioural, physiological and brain transcriptional changes in honey bee queens.', answer the user's query. |
What is the biomedical concept corresponding to 'honey bees'? | [
"honey bee (apis mellifera)",
"honeybee (apis mellifera)",
"european honey bee (apis mellifera)",
"western honey bee (apis mellifera)",
"apis mellifera (bee (apis mellifera))"
] | [
"honey bees (apinae)",
"eastern honeybee (apis cerana)",
"german honeybee (apis mellifera mellifera)",
"asiatic honeybee (apis cerana)"
] | Given the context 'Comparisons with previous studies of honey bees and female Drosophila indicate that common molecular mechanisms may be responsible for regulating reproductive changes across different mating regimes and insect orders.
', answer the user's query. |
What is the biomedical concept corresponding to 'drosophila'? | [
"fruit fly (drosophila melanogaster)",
"drosophila melanogaster (sophophora melanogaster)"
] | [
"drosophila (drosophila <basidiomycete fungi>)",
"drosophila (drosophila <flies,genus>)",
"drosophila <basidiomycete fungi> (drosophila)",
"drosophila <flies,genus> (fruit flies)"
] | Given the context 'Comparisons with previous studies of honey bees and female Drosophila indicate that common molecular mechanisms may be responsible for regulating reproductive changes across different mating regimes and insect orders.
', answer the user's query. |
What is the biomedical concept corresponding to 'agrobacterium tumefasciens'? | [
"agrobacterium tumefaciens (agrobacterium tumefaciens (smith and townsend 1907) conn 1942 (approved lists 1980))",
"pseudomonas tumefaciens (agrobacterium tumefaciens)",
"agrobacterium tumefaciens (smith and townsend 1907) conn 1942 (approved lists 1980) (agrobacterium tumefaciens)",
"agrobacterium fabacearum... | [
"agrobacterium leguminum",
"agrobacterium radiobacter (beijerinck and van delden 1902) conn 1942 (approved lists 1980) (agrobacterium radiobacter)",
"agrobacterium radiobacter (agrobacterium radiobacter (beijerinck and van delden 1902) conn 1942 (approved lists 1980))",
"agrobacterium aurantiacum ('agrobacter... | Given the context 'Agrobacterium tumefasciens-mediated transformation of the aquatic fungus Blastocladiella emersonii.
Agrobacterium tumefaciens is widely used for plant DNA transformation and more recently, has also been used to transform yeast, filamentous fungi and even human cells.', answer the user's query. |
What is the biomedical concept corresponding to 'blastocladiella emersonii'? | [
"blastocladiella emersonii"
] | [
"blastocladiella emersonii atcc 22665",
"graesiella emersonii (chlorella emersonii)",
"chlorella emersonii (graesiella emersonii)",
"blastocladiella simplex"
] | Given the context 'Agrobacterium tumefasciens-mediated transformation of the aquatic fungus Blastocladiella emersonii.
Agrobacterium tumefaciens is widely used for plant DNA transformation and more recently, has also been used to transform yeast, filamentous fungi and even human cells.', answer the user's query. |
What is the biomedical concept corresponding to 'agrobacterium tumefaciens'? | [
"agrobacterium tumefaciens (agrobacterium tumefaciens (smith and townsend 1907) conn 1942 (approved lists 1980))",
"agrobacterium tumefaciens (smith and townsend 1907) conn 1942 (approved lists 1980) (agrobacterium tumefaciens)",
"pseudomonas tumefaciens (agrobacterium tumefaciens)",
"agrobacterium fabacearum... | [
"agrobacterium leguminum",
"agrobacterium radiobacter (agrobacterium radiobacter (beijerinck and van delden 1902) conn 1942 (approved lists 1980))",
"agrobacterium rhizogenes (riker et al. 1930) conn 1942 (approved lists 1980) (rhizobium rhizogenes)",
"agrobacterium radiobacter (beijerinck and van delden 1902... | Given the context 'Agrobacterium tumefasciens-mediated transformation of the aquatic fungus Blastocladiella emersonii.
Agrobacterium tumefaciens is widely used for plant DNA transformation and more recently, has also been used to transform yeast, filamentous fungi and even human cells.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"baker's yeast (saccharomyces cerevisiae)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces hansenii (debaryomyces hansenii)",
"saccharomyces albicans (candida albicans)",
"saccharomyces globosus (saccharomyces uvarum)"
] | Given the context 'Agrobacterium tumefasciens-mediated transformation of the aquatic fungus Blastocladiella emersonii.
Agrobacterium tumefaciens is widely used for plant DNA transformation and more recently, has also been used to transform yeast, filamentous fungi and even human cells.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"glossus humanus (cardium humanum)"
] | Given the context 'Agrobacterium tumefasciens-mediated transformation of the aquatic fungus Blastocladiella emersonii.
Agrobacterium tumefaciens is widely used for plant DNA transformation and more recently, has also been used to transform yeast, filamentous fungi and even human cells.', answer the user's query. |
What is the biomedical concept corresponding to 'blastocladiella emersonii'? | [
"blastocladiella emersonii"
] | [
"blastocladiella emersonii atcc 22665",
"graesiella emersonii (chlorella emersonii)",
"chlorella emersonii (graesiella emersonii)",
"blastocladiella simplex"
] | Given the context 'Using this technique, we developed the first transformation protocol for the saprobic aquatic fungus Blastocladiella emersonii, a Blastocladiomycete localized at the base of fungal phylogenetic tree, which has been shown as a promising and interesting model of study of cellular function and differentiation.', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus nidulans'? | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus nidulellus (aspergillus nidulans)",
"emericella nidulans (aspergillus nidulans)"
] | [
"aspergillus neoellipticus (aspergillus fumigatus)",
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aphanothece nidulans",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)"
] | Given the context 'We constructed binary T-DNA vectors containing hygromycin phosphotransferase (hph) or enhanced green fluorescent protein (egfp) genes, under the control of Aspergillus nidulans trpC promoter and terminator sequences.', answer the user's query. |
What is the biomedical concept corresponding to 'agrobacterium tumefsciens'? | [
"agrobacterium tumefaciens (agrobacterium tumefaciens (smith and townsend 1907) conn 1942 (approved lists 1980))",
"agrobacterium tumefaciens (smith and townsend 1907) conn 1942 (approved lists 1980) (agrobacterium tumefaciens)",
"pseudomonas tumefaciens (agrobacterium tumefaciens)",
"agrobacterium fabacearum... | [
"agrobacterium leguminum",
"agrobacterium radiobacter (beijerinck and van delden 1902) conn 1942 (approved lists 1980) (agrobacterium radiobacter)",
"agrobacterium radiobacter (agrobacterium radiobacter (beijerinck and van delden 1902) conn 1942 (approved lists 1980))",
"agrobacterium divergens"
] | Given the context '24 h of co-cultivation in induction medium (IM) agar plates, followed by transfer to PYG-agar plates containing cefotaxim to kill Agrobacterium tumefsciens and hygromycin to select transformants, resulted in growth and sporulation of resistant transformants.', answer the user's query. |
What is the biomedical concept corresponding to 'penicillium chrysogenum'? | [
"penicillium chrysogenum thom, 1910 (penicillium chrysogenum)",
"penicillium notatum (penicillium chrysogenum)",
"penicillium chrysogenum (penicillium chrysogenum var. chrysogenum)"
] | [
"penicillium granulatum",
"penicillium citrinum",
"penicillium flavum",
"penicillium lanosum"
] | Given the context 'Heterotrimeric Galpha protein Pga1 from Penicillium chrysogenum triggers germination in response to carbon sources and affects negatively resistance to different stress conditions.
', answer the user's query. |
What is the biomedical concept corresponding to 'penicillium chrysogenum'? | [
"penicillium chrysogenum thom, 1910 (penicillium chrysogenum)",
"penicillium notatum (penicillium chrysogenum)",
"penicillium chrysogenum (penicillium chrysogenum var. chrysogenum)"
] | [
"penicillium granulatum",
"penicillium citrinum",
"penicillium flavum",
"penicillium lanosum"
] | Given the context 'Heterotrimeric Galpha protein Pga1 of Penicillium chrysogenum controls vegetative growth, conidiation and secondary metabolite production.', answer the user's query. |
What is the biomedical concept corresponding to 'cryptococcus neoformans'? | [
"blastomyces neoformans (cryptococcus neoformans)",
"cryptococcus neoformans (filobasidiella neoformans kwon-chung, 1976)",
"saccharomyces neoformans (cryptococcus neoformans)",
"torula neoformans (cryptococcus neoformans)",
"torulopsis neoformans (cryptococcus neoformans)"
] | [
"cryptococcus neoformans var. gattii (cryptococcus gattii)",
"cryptococcus neoformans serotype d (cryptococcus neoformans var. neoformans)",
"cryptococcus neoformans species complex",
"filobasidiella neoformans var. neoformans (cryptococcus neoformans var. neoformans)"
] | Given the context 'Characterizing the role of RNA silencing components in Cryptococcus neoformans.
', answer the user's query. |
What is the biomedical concept corresponding to 'cryptococcus neoformans'? | [
"blastomyces neoformans (cryptococcus neoformans)",
"cryptococcus neoformans (filobasidiella neoformans kwon-chung, 1976)",
"saccharomyces neoformans (cryptococcus neoformans)",
"torula neoformans (cryptococcus neoformans)",
"torulopsis neoformans (cryptococcus neoformans)"
] | [
"cryptococcus neoformans var. gattii (cryptococcus gattii)",
"cryptococcus neoformans serotype d (cryptococcus neoformans var. neoformans)",
"cryptococcus neoformans species complex",
"filobasidiella neoformans var. neoformans (cryptococcus neoformans var. neoformans)"
] | Given the context 'To elucidate the physiological functions of the RNAi pathway in Cryptococcus neoformans that causes fungal meningitis, here we performed genetic analyses for genes encoding Argonaute (AGO1 and AGO2), RNA-dependent RNA polymerase (RDP1), and Dicers (DCR1 and DCR2) in both serotype A and D C. neoformans.', answer the user's query. |
What is the biomedical concept corresponding to 'c. neoformans'? | [
"saccharomyces neoformans (cryptococcus neoformans)",
"blastomyces neoformans (cryptococcus neoformans)",
"cryptococcus neoformans (filobasidiella neoformans kwon-chung, 1976)",
"filobasidiella neoformans (cryptococcus neoformans)",
"torulopsis neoformans (cryptococcus neoformans)"
] | [
"cryptococcus neoformans var. gattii (cryptococcus gattii)",
"cryptococcus neoformans species complex",
"filobasidiella neoformans var. neoformans (cryptococcus neoformans var. neoformans)",
"cryptococcus neoformans serotype d (cryptococcus neoformans var. neoformans)"
] | Given the context 'To elucidate the physiological functions of the RNAi pathway in Cryptococcus neoformans that causes fungal meningitis, here we performed genetic analyses for genes encoding Argonaute (AGO1 and AGO2), RNA-dependent RNA polymerase (RDP1), and Dicers (DCR1 and DCR2) in both serotype A and D C. neoformans.', answer the user's query. |
What is the biomedical concept corresponding to 'c. neoformans'? | [
"saccharomyces neoformans (cryptococcus neoformans)",
"blastomyces neoformans (cryptococcus neoformans)",
"cryptococcus neoformans (filobasidiella neoformans kwon-chung, 1976)",
"filobasidiella neoformans (cryptococcus neoformans)",
"torulopsis neoformans (cryptococcus neoformans)"
] | [
"cryptococcus neoformans var. gattii (cryptococcus gattii)",
"cryptococcus neoformans species complex",
"filobasidiella neoformans var. neoformans (cryptococcus neoformans var. neoformans)",
"cryptococcus neoformans serotype d (cryptococcus neoformans var. neoformans)"
] | Given the context 'The present study shows that Ago1, Rdp1, and Dcr2 are the major components of the RNAi process occurring in C. neoformans.', answer the user's query. |
What is the biomedical concept corresponding to 'c. neoformans'? | [
"saccharomyces neoformans (cryptococcus neoformans)",
"blastomyces neoformans (cryptococcus neoformans)",
"cryptococcus neoformans (filobasidiella neoformans kwon-chung, 1976)",
"filobasidiella neoformans (cryptococcus neoformans)",
"torulopsis neoformans (cryptococcus neoformans)"
] | [
"cryptococcus neoformans var. gattii (cryptococcus gattii)",
"cryptococcus neoformans species complex",
"filobasidiella neoformans var. neoformans (cryptococcus neoformans var. neoformans)",
"cryptococcus neoformans serotype d (cryptococcus neoformans var. neoformans)"
] | Given the context 'Notably, the serotype D rdp1Delta mutants showed an increase in transcript abundance of active retrotransposons and transposons, such as T2 and T3, the latter of which is a novel serotype D-specific transposon of C. neoformans.', answer the user's query. |
What is the biomedical concept corresponding to 'c. neoformans'? | [
"saccharomyces neoformans (cryptococcus neoformans)",
"blastomyces neoformans (cryptococcus neoformans)",
"cryptococcus neoformans (filobasidiella neoformans kwon-chung, 1976)",
"filobasidiella neoformans (cryptococcus neoformans)",
"torulopsis neoformans (cryptococcus neoformans)"
] | [
"cryptococcus neoformans var. gattii (cryptococcus gattii)",
"cryptococcus neoformans species complex",
"filobasidiella neoformans var. neoformans (cryptococcus neoformans var. neoformans)",
"cryptococcus neoformans serotype d (cryptococcus neoformans var. neoformans)"
] | Given the context 'In conclusion, the RNAi pathway plays an important role in controlling transposon activity and genome integrity of C. neoformans.
', answer the user's query. |
What is the biomedical concept corresponding to 'yellow fever mosquito'? | [
"yellow fever mosquito (aedes aegypti)",
"culex aegypti (aedes aegypti)"
] | [
"mosquito flavivirus",
"culex orientalis",
"aedes flavivirus",
"culex malayi (aedes malayi)"
] | Given the context 'Characterization of the oxysterol-binding protein gene family in the yellow fever mosquito, Aedes aegypti.
', answer the user's query. |
What is the biomedical concept corresponding to 'aedes aegypti'? | [
"culex aegypti (aedes aegypti)",
"aedes aegypti (aedes (stegomyia) aegypti)",
"yellow fever mosquito (aedes aegypti)",
"stegomyia aegypti (aedes aegypti)",
"aedes (stegomyia) aegypti (aedes aegypti)"
] | [
"aedes flavopictus",
"aedes aegypti aegypti (aedes aegypti queenslandensis)",
"aedes rossicus",
"culex aegypti aegypti (aedes aegypti aegypti)"
] | Given the context 'Characterization of the oxysterol-binding protein gene family in the yellow fever mosquito, Aedes aegypti.
', answer the user's query. |
What is the biomedical concept corresponding to 'aedes aegypti'? | [
"culex aegypti (aedes aegypti)",
"aedes aegypti (aedes (stegomyia) aegypti)",
"yellow fever mosquito (aedes aegypti)",
"stegomyia aegypti (aedes aegypti)",
"aedes (stegomyia) aegypti (aedes aegypti)"
] | [
"aedes flavopictus",
"aedes aegypti aegypti (aedes aegypti queenslandensis)",
"aedes rossicus",
"culex aegypti aegypti (aedes aegypti aegypti)"
] | Given the context 'Four ORP genes were cloned from Aedes aegypti.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"glossus humanus (cardium humanum)"
] | Given the context 'Based on amino acid sequence homology to human proteins, they are AeOSBP, AeORP1, AeORP8 and AeORP9.', answer the user's query. |
What is the biomedical concept corresponding to 'ae. aegypti'? | [
"culex aegypti (aedes aegypti)",
"aedes aegypti (aedes (stegomyia) aegypti)",
"yellow fever mosquito (aedes aegypti)",
"aedes (stegomyia) aegypti (aedes aegypti)",
"stegomyia aegypti (aedes aegypti)"
] | [
"aedes aegypti aegypti (aedes aegypti queenslandensis)",
"culex aegypti aegypti (aedes aegypti aegypti)",
"aedes albopictus (asian tiger mosquito)",
"aedes aegypti queenslandensis (aedes aegypti aegypti)"
] | Given the context 'Furthermore, over-expression of AeORPs facilitated [(3)H]-cholesterol uptake in Ae. aegypti cultured Aag -2 cells.
', answer the user's query. |
What is the biomedical concept corresponding to 'neurospora crassa'? | [
"neurospora crassa (chrysonilia crassa)",
"chrysonilia crassa (neurospora crassa)"
] | [
"neurospora",
"neocosmospora crassa (fusarium crassum)",
"neurospora terricola",
"neurospora cratophora (gelasinospora cratophora)"
] | Given the context 'Activation and localization of protein kinase C in Neurospora crassa.
', answer the user's query. |
What is the biomedical concept corresponding to 'neurosporacrassa'? | [
"neurospora crassa (chrysonilia crassa)",
"chrysonilia crassa (neurospora crassa)"
] | [
"neurospora",
"neurospora pannonica",
"neurospora terricola",
"neurospora terricola fgsc 1889"
] | Given the context 'The Neurosporacrassa protein kinase C (NPKC) is reported to be a regulator of light responsive genes.', answer the user's query. |
What is the biomedical concept corresponding to 'gryllus bimaculatus'? | [
"gryllus bimaculatus (two-spotted cricket)",
"two-spotted cricket (gryllus bimaculatus)"
] | [
"diglyphus bimaculatus",
"gryllus pennsylvanicus",
"belomicrus bimaculatus",
"gryllus bivittatus (melanoplus bivittatus)"
] | Given the context 'Identification and expression analysis of the genes involved in serotonin biosynthesis and transduction in the field cricket Gryllus bimaculatus.
', answer the user's query. |
What is the biomedical concept corresponding to 'gryllus bimaculatus degeer'? | [
"gryllus bimaculatus (two-spotted cricket)",
"two-spotted cricket (gryllus bimaculatus)"
] | [
"gryllus pennsylvanicus",
"gryllus vocalis",
"gryllus campestris",
"gryllus bivittatus (melanoplus bivittatus)"
] | Given the context 'To elucidate the molecular basis of the cricket 5-HT system, we identified 5-HT-related genes in the field cricket Gryllus bimaculatus DeGeer.', answer the user's query. |
What is the biomedical concept corresponding to 'aspergillus nidulans'? | [
"aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884)",
"aspergillus nidulans (eidam) g. winter, 1884 (aspergillus nidulans)",
"aspergillus nidulellus (aspergillus nidulans)",
"emericella nidulans (aspergillus nidulans)"
] | [
"aspergillus neoellipticus (aspergillus fumigatus)",
"aspergillus fumigatus fresen., 1863 (aspergillus fumigatus)",
"aphanothece nidulans",
"aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884)"
] | Given the context 'This has already led to the activation of silent gene clusters and the identification of novel compounds in Aspergillus nidulans.', answer the user's query. |
What is the biomedical concept corresponding to 'wheat'? | [
"common wheat (triticum aestivum)",
"wheat (triticum aestivum)",
"bread wheat (triticum aestivum)",
"triticum vulgare (triticum aestivum)",
"triticum sativum (triticum aestivum)"
] | [
"english wheat (triticum turgidum)",
"triticum",
"poulard wheat (triticum turgidum)",
"triticum tauschii (aegilops tauschii)"
] | Given the context 'Certain Fusarium species cause head blight of wheat and other small grains worldwide and produce trichothecene mycotoxins.', answer the user's query. |
What is the biomedical concept corresponding to 'humans'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"glossus humanus (cardium humanum)"
] | Given the context 'These mycotoxins can induce toxicoses in animals and humans and can contribute to the ability of some fusaria to cause plant disease.', answer the user's query. |
What is the biomedical concept corresponding to 'f. graminearum'? | [
"fusarium graminearum (gibberella zeae (schwein.) petch, 1936)",
"gibberella zeae (fusarium graminearum)",
"gibberella zeae (schwein.) petch, 1936 (fusarium graminearum)",
"sphaeria zeae (fusarium graminearum)"
] | [
"fusarium graminum",
"fusisporium cerealis (fusarium cerealis)",
"fusisporium avenaceum (fusarium avenaceum)",
"fusarium praegraminearum"
] | Given the context 'Functional analyses of the TRI8 enzyme (Tri8) in F. graminearum, the predominant cause of wheat head blight in North America and Europe, revealed that Tri8 from 3-ADON strains catalyzes deacetylation of the trichothecene biosynthetic intermediate 3,15-diacetyldeoxynivalenol at carbon 15 to yield 3-ADON, whereas Tri8 from 15-ADON strains catalyzes deacetylation of 3,15-diacetyldeoxynivalenol at carbon 3 to yield 15-ADON.', answer the user's query. |
What is the biomedical concept corresponding to 'enterococcus faecium'? | [
"enterococcus faecium (streptococcus faecium)",
"streptococcus faecium (enterococcus faecium)"
] | [
"enterococcus proteiformis (enterococcus faecalis)",
"enterococcus plantarum",
"streptococcus faecalis (enterococcus faecalis)",
"enterococcus"
] | Given the context 'The recombinase IntA is required for excision of esp-containing ICEEfm1 in Enterococcus faecium.
', answer the user's query. |
What is the biomedical concept corresponding to 'enterococcus faecium'? | [
"enterococcus faecium (streptococcus faecium)",
"streptococcus faecium (enterococcus faecium)"
] | [
"enterococcus proteiformis (enterococcus faecalis)",
"enterococcus plantarum",
"streptococcus faecalis (enterococcus faecalis)",
"enterococcus"
] | Given the context 'Comparative genome analysis of Enterococcus faecium recently revealed that a genomic island containing the esp gene, referred to as the esp-containing pathogenicity island (esp PAI), can be transferred by conjugation and contains a partial Tn916-like element and an integrase gene, intA. Here, we characterize the role of intA in the excision of the esp PAI.', answer the user's query. |
What is the biomedical concept corresponding to 'e. faecium e1162'? | [
"enterococcus faecium (streptococcus faecium)",
"streptococcus faecium (enterococcus faecium)"
] | [
"enterococcus faecium e1165",
"enterococcus faecium e525",
"enterococcus faecium e155",
"enterococcus faecium erv168"
] | Given the context 'An intA insertion-deletion mutant in E. faecium E1162 (E1162DeltaintA) was constructed and in trans complemented with wild-type intA (E1162DeltaintA::pEF30).', answer the user's query. |
What is the biomedical concept corresponding to 'e. faecium'? | [
"enterococcus faecium (streptococcus faecium)",
"streptococcus faecium (enterococcus faecium)"
] | [
"clostridium faecium",
"brachybacterium faecium",
"enterococcus proteiformis (enterococcus faecalis)",
"bacteroides faecium"
] | Given the context 'No CI were detected in E1162DeltaintA, while in the complemented strain E1162DeltaintA::pEF30 CI formation was restored, indicating that intA is essential for excision and subsequent mobilization of the esp-containing genomic island in E. faecium.', answer the user's query. |
What is the biomedical concept corresponding to 'paramecium caudatum'? | [
"paramecium caudatum"
] | [
"phragmipedium caudatum",
"pleioplectron caudatum",
"diplazium caudatum",
"lycoperdon caudatum"
] | Given the context 'Thermal performance curves of Paramecium caudatum: a model selection approach.
', answer the user's query. |
What is the biomedical concept corresponding to 'paramecium caudatum'? | [
"paramecium caudatum"
] | [
"phragmipedium caudatum",
"pleioplectron caudatum",
"diplazium caudatum",
"lycoperdon caudatum"
] | Given the context 'In this study, temperature reaction norms of natural isolates of the freshwater protist Paramecium caudatum were investigated, considering nearly the entire temperature range.', answer the user's query. |
What is the biomedical concept corresponding to 'pseudomonas aeruginosa'? | [
"pseudomonas aeruginosa (pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980))",
"pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980) (pseudomonas aeruginosa)",
"bacillus aeruginosus (pseudomonas aeruginosa)",
"pseudomonas pyocyanea (pseudomonas aeruginosa)",
"bact... | [
"pseudomonas nosocomialis (stutzerimonas nosocomialis)",
"pseudomonas aeruginosa c",
"pseudomonas aeruginosa pa1",
"pseudomonas paralactis"
] | Given the context 'Relating the physical properties of Pseudomonas aeruginosa lipopolysaccharides to virulence by atomic force microscopy.
', answer the user's query. |
What is the biomedical concept corresponding to 'pseudomonas aeruginosa'? | [
"pseudomonas aeruginosa (pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980))",
"pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980) (pseudomonas aeruginosa)",
"bacillus aeruginosus (pseudomonas aeruginosa)",
"pseudomonas pyocyanea (pseudomonas aeruginosa)",
"bact... | [
"pseudomonas nosocomialis (stutzerimonas nosocomialis)",
"pseudomonas aeruginosa c",
"pseudomonas aeruginosa pa1",
"pseudomonas paralactis"
] | Given the context 'Lipopolysaccharides (LPS) are an important class of macromolecules that are components of the outer membrane of Gram-negative bacteria such as Pseudomonas aeruginosa.', answer the user's query. |
What is the biomedical concept corresponding to 'p. aeruginosa'? | [
"pseudomonas aeruginosa (pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980))",
"pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980) (pseudomonas aeruginosa)",
"pseudomonas pyocyanea (pseudomonas aeruginosa)",
"bacillus aeruginosus (pseudomonas aeruginosa)",
"baci... | [
"pasteurella pestis (yersinia pestis)",
"pseudomonas aeruginosa c",
"pseudomonas nosocomialis (stutzerimonas nosocomialis)",
"pasteurella aerogenes ([pasteurella] aerogenes)"
] | Given the context 'P. aeruginosa contains two different sugar chains, the homopolymer common antigen (A band) and the heteropolymer O antigen (B band), which impart serospecificity.', answer the user's query. |
What is the biomedical concept corresponding to 'p. aeruginosa strain pa103'? | [
"pseudomonas aeruginosa (pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980))",
"pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980) (pseudomonas aeruginosa)",
"pseudomonas pyocyanea (pseudomonas aeruginosa)",
"bacillus aeruginosus (pseudomonas aeruginosa)",
"bact... | [
"pseudomonas aeruginosa pa1",
"pseudomonas aeruginosa pa03",
"pseudomonas aeruginosa strain pa103 (pseudomonas aeruginosa pa103)",
"pseudomonas aeruginosa pa99"
] | Given the context 'Here we used atomic force microscopy (AFM) to probe the physical properties of the LPS of P. aeruginosa strain PA103 (serogroup O11) in situ.', answer the user's query. |
What is the biomedical concept corresponding to 'mouse'? | [
"mouse (mus musculus)",
"mus musculus (house mouse)",
"house mouse (mus musculus)"
] | [
"mouse (mus <genus>)",
"mus musculus musculus (eastern european house mouse)",
"western european house mouse (mus musculus domesticus)",
"mus musculus domesticus (western european house mouse)"
] | Given the context 'Adhesion forces were not correlated with LPS length, but a relationship between adhesion force and bacterial pathogenicity was found in a mouse acute pneumonia model of infection.', answer the user's query. |
What is the biomedical concept corresponding to 'p. aeruginosa'? | [
"pseudomonas aeruginosa (pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980))",
"pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980) (pseudomonas aeruginosa)",
"pseudomonas pyocyanea (pseudomonas aeruginosa)",
"bacillus aeruginosus (pseudomonas aeruginosa)",
"baci... | [
"pasteurella pestis (yersinia pestis)",
"pseudomonas aeruginosa c",
"pseudomonas nosocomialis (stutzerimonas nosocomialis)",
"pasteurella aerogenes ([pasteurella] aerogenes)"
] | Given the context 'Our research contributes to further understanding of the role of LPS in the adhesion and virulence of P. aeruginosa.
', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcus suis'? | [
"streptococcus suis"
] | [
"streptococcus ovis",
"streptococcus sanguinis",
"streptococcus bovis (streptococcus equinus)",
"streptococcus equinus (streptococcus bovis)"
] | Given the context 'The minor pilin subunit Sgp2 is necessary for assembly of the pilus encoded by the srtG cluster of Streptococcus suis.
', answer the user's query. |
What is the biomedical concept corresponding to 'swine'? | [
"swine (sus scrofa)",
"pigs (sus scrofa) (sus scrofa)",
"sus scrofa (pigs (sus scrofa))",
"pig (sus scrofa) (sus scrofa)",
"wild boar (sus scrofa)"
] | [
"domestic pig (sus scrofa domesticus)",
"sus domestica (sus scrofa domesticus)",
"sus domesticus (sus scrofa domesticus)",
"sus scrofa domesticus (sus scrofa domestica)"
] | Given the context 'The srtG cluster is one of the putative pilus gene clusters identified in the major swine pathogen Streptococcus suis.', answer the user's query. |
What is the biomedical concept corresponding to 'streptococcus suis'? | [
"streptococcus suis"
] | [
"streptococcus ovis",
"streptococcus sanguinis",
"streptococcus bovis (streptococcus equinus)",
"streptococcus equinus (streptococcus bovis)"
] | Given the context 'The srtG cluster is one of the putative pilus gene clusters identified in the major swine pathogen Streptococcus suis.', answer the user's query. |
What is the biomedical concept corresponding to 's. suis strain 89/1591'? | [
"streptococcus suis"
] | [
"streptococcus ovis",
"streptococcus suis 10581",
"streptococcus suis ys1",
"streptococcus suis ys21"
] | Given the context 'In this study, by constructing mutants for each of the genes in the cluster and by both immunoblotting and immunogold electron microscopic analysis with antibodies against Sgp1 and Sgp2, we found that the srtG cluster mediates the expression of pilus-like structures in S. suis strain 89/1591.', answer the user's query. |
What is the biomedical concept corresponding to 'pinus sylvestris'? | [
"pinus sylvestris (scotch pine)",
"scotch pine (pinus sylvestris)",
"scots pine (pinus sylvestris)"
] | [
"pinus tropicalis (tropical pine)",
"pinus",
"pinus virginiana (scrub pine)",
"pinus occidentalis"
] | Given the context 'Here, we report the long-term impact of N loading and the recovery of ectomycorrhiza after high N loading on a Pinus sylvestris forest.', answer the user's query. |
What is the biomedical concept corresponding to 'eciton burchellii'? | [
"eciton burchellii (labidus burchellii)",
"labidus burchellii (eciton burchellii)"
] | [
"senecio burchellii",
"eresia burchellii",
"brunfelsia burchellii",
"mollia burchellii"
] | Given the context 'Here, we provide such data for two common species of swarm raiders broadly sympatric throughout the Neotropics: the iconic Eciton burchellii and the more secretive, less studied Labidus praedator.', answer the user's query. |
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