query stringlengths 53 100 | positive listlengths 1 5 | negative listlengths 1 4 | system stringlengths 68 790 |
|---|---|---|---|
What is the biomedical concept corresponding to 'alces alces'? | [
"alces alces (european elk, moose)",
"eurasian elk (alces alces)",
"elk (alces alces) (alces alces)",
"cervus alces (alces alces)",
"european elk, moose (alces alces)"
] | [
"alces alces americana (alces americanus)",
"alces americanus (alces alces americana)",
"european elk (alces alces alces)",
"alces"
] | Given the context '2. We aim to quantify the relative effect of various individual, forage and climatic determinants of variation in home range size across multiple spatiotemporal scales in a large browsing herbivore, the moose (Alces alces), living at the southern limit of its distribution in Norway.', answer the user's query. |
What is the biomedical concept corresponding to 'vaccinia virus'? | [
"vaccinia virus (vaccinia virus vv)",
"vaccinia virus vv (vaccinia virus)"
] | [
"vaccinia virus lister (vaccinia virus (strain lister))",
"small pox virus (variola virus)",
"vaccinia virus mva (modified vaccinia ankara virus)",
"smallpox virus (variola virus)"
] | Given the context 'Roles of vaccinia virus genes E3L and K3L and host genes PKR and RNase L during intratracheal infection of C57BL/6 mice.
', answer the user's query. |
What is the biomedical concept corresponding to 'mice'? | [
"mouse (mus musculus)",
"house mouse (mus musculus)",
"mus musculus (house mouse)"
] | [
"mouse (mus <genus>)",
"mus musculus musculus (eastern european house mouse)",
"mice (mus <genus>) (mus <genus>)",
"western european house mouse (mus musculus domesticus)"
] | Given the context 'Roles of vaccinia virus genes E3L and K3L and host genes PKR and RNase L during intratracheal infection of C57BL/6 mice.
', answer the user's query. |
What is the biomedical concept corresponding to 'vaccinia virus'? | [
"vaccinia virus (vaccinia virus vv)",
"vaccinia virus vv (vaccinia virus)"
] | [
"vaccinia virus lister (vaccinia virus (strain lister))",
"small pox virus (variola virus)",
"vaccinia virus mva (modified vaccinia ankara virus)",
"smallpox virus (variola virus)"
] | Given the context 'In poxvirus infections, the interactions between the vaccinia virus (VV) genes E3L and K3L, which target RNase L and PKR, respectively, serve to prevent the induction of the dsRNA-dependent induced interferon response in cell culture.', answer the user's query. |
What is the biomedical concept corresponding to 'vv'? | [
"vaccinia virus (vaccinia virus vv)",
"vaccinia virus vv (vaccinia virus)"
] | [
"smallpox virus (variola virus)",
"small pox virus (variola virus)",
"smallpox (variola virus)",
"avipoxvirus"
] | Given the context 'In poxvirus infections, the interactions between the vaccinia virus (VV) genes E3L and K3L, which target RNase L and PKR, respectively, serve to prevent the induction of the dsRNA-dependent induced interferon response in cell culture.', answer the user's query. |
What is the biomedical concept corresponding to 'vv'? | [
"vaccinia virus (vaccinia virus vv)",
"vaccinia virus vv (vaccinia virus)"
] | [
"smallpox virus (variola virus)",
"small pox virus (variola virus)",
"smallpox (variola virus)",
"avipoxvirus"
] | Given the context 'To determine the importance of these host genes in controlling VV infections, mouse single-gene knockouts of RNase L and PKR and double-knockout mice were studied following intratracheal infection with VV, VVDeltaK3L, or VVDeltaE3L. VV caused lethal disease in all mouse strains.', answer the user's query. |
What is the biomedical concept corresponding to 'mouse'? | [
"mouse (mus musculus)",
"mus musculus (house mouse)",
"house mouse (mus musculus)"
] | [
"mouse (mus <genus>)",
"mus musculus musculus (eastern european house mouse)",
"western european house mouse (mus musculus domesticus)",
"mus musculus domesticus (western european house mouse)"
] | Given the context 'To determine the importance of these host genes in controlling VV infections, mouse single-gene knockouts of RNase L and PKR and double-knockout mice were studied following intratracheal infection with VV, VVDeltaK3L, or VVDeltaE3L. VV caused lethal disease in all mouse strains.', answer the user's query. |
What is the biomedical concept corresponding to 'mice'? | [
"mouse (mus musculus)",
"house mouse (mus musculus)",
"mus musculus (house mouse)"
] | [
"mouse (mus <genus>)",
"mus musculus musculus (eastern european house mouse)",
"mice (mus <genus>) (mus <genus>)",
"western european house mouse (mus musculus domesticus)"
] | Given the context 'To determine the importance of these host genes in controlling VV infections, mouse single-gene knockouts of RNase L and PKR and double-knockout mice were studied following intratracheal infection with VV, VVDeltaK3L, or VVDeltaE3L. VV caused lethal disease in all mouse strains.', answer the user's query. |
What is the biomedical concept corresponding to 'vv'? | [
"vaccinia virus (vaccinia virus vv)",
"vaccinia virus vv (vaccinia virus)"
] | [
"smallpox virus (variola virus)",
"small pox virus (variola virus)",
"smallpox (variola virus)",
"avipoxvirus"
] | Given the context 'To determine the importance of these host genes in controlling VV infections, mouse single-gene knockouts of RNase L and PKR and double-knockout mice were studied following intratracheal infection with VV, VVDeltaK3L, or VVDeltaE3L. VV caused lethal disease in all mouse strains.', answer the user's query. |
What is the biomedical concept corresponding to 'vv'? | [
"vaccinia virus (vaccinia virus vv)",
"vaccinia virus vv (vaccinia virus)"
] | [
"smallpox virus (variola virus)",
"small pox virus (variola virus)",
"smallpox (variola virus)",
"avipoxvirus"
] | Given the context 'To determine the importance of these host genes in controlling VV infections, mouse single-gene knockouts of RNase L and PKR and double-knockout mice were studied following intratracheal infection with VV, VVDeltaK3L, or VVDeltaE3L. VV caused lethal disease in all mouse strains.', answer the user's query. |
What is the biomedical concept corresponding to 'mouse'? | [
"mouse (mus musculus)",
"mus musculus (house mouse)",
"house mouse (mus musculus)"
] | [
"mouse (mus <genus>)",
"mus musculus musculus (eastern european house mouse)",
"western european house mouse (mus musculus domesticus)",
"mus musculus domesticus (western european house mouse)"
] | Given the context 'To determine the importance of these host genes in controlling VV infections, mouse single-gene knockouts of RNase L and PKR and double-knockout mice were studied following intratracheal infection with VV, VVDeltaK3L, or VVDeltaE3L. VV caused lethal disease in all mouse strains.', answer the user's query. |
What is the biomedical concept corresponding to 'mice'? | [
"mouse (mus musculus)",
"house mouse (mus musculus)",
"mus musculus (house mouse)"
] | [
"mouse (mus <genus>)",
"mus musculus musculus (eastern european house mouse)",
"mice (mus <genus>) (mus <genus>)",
"western european house mouse (mus musculus domesticus)"
] | Given the context 'The single-knockout animals were more susceptible than wild-type animals, while the RNase L(-/-) PKR(-/-) mice were the most susceptible.', answer the user's query. |
What is the biomedical concept corresponding to 'mice'? | [
"mouse (mus musculus)",
"house mouse (mus musculus)",
"mus musculus (house mouse)"
] | [
"mouse (mus <genus>)",
"mus musculus musculus (eastern european house mouse)",
"mice (mus <genus>) (mus <genus>)",
"western european house mouse (mus musculus domesticus)"
] | Given the context 'VVDeltaE3L infections of wild-type mice were asymptomatic, demonstrating that E3L plays a critical role in controlling the host immune response.', answer the user's query. |
What is the biomedical concept corresponding to 'mice'? | [
"mouse (mus musculus)",
"house mouse (mus musculus)",
"mus musculus (house mouse)"
] | [
"mouse (mus <genus>)",
"mus musculus musculus (eastern european house mouse)",
"mice (mus <genus>) (mus <genus>)",
"western european house mouse (mus musculus domesticus)"
] | Given the context 'RNase L(-/-) mice showed no disease, whereas 20% of the PKR(-/-) mice succumbed at a dose of 10(8) PFU.', answer the user's query. |
What is the biomedical concept corresponding to 'mice'? | [
"mouse (mus musculus)",
"house mouse (mus musculus)",
"mus musculus (house mouse)"
] | [
"mouse (mus <genus>)",
"mus musculus musculus (eastern european house mouse)",
"mice (mus <genus>) (mus <genus>)",
"western european house mouse (mus musculus domesticus)"
] | Given the context 'RNase L(-/-) mice showed no disease, whereas 20% of the PKR(-/-) mice succumbed at a dose of 10(8) PFU.', answer the user's query. |
What is the biomedical concept corresponding to 'mice'? | [
"mouse (mus musculus)",
"house mouse (mus musculus)",
"mus musculus (house mouse)"
] | [
"mouse (mus <genus>)",
"mus musculus musculus (eastern european house mouse)",
"mice (mus <genus>) (mus <genus>)",
"western european house mouse (mus musculus domesticus)"
] | Given the context 'Lethal disease was routinely observed in RNase L(-/-) PKR(-/-) mice inoculated with 10(8) PFU of VVDeltaE3L, with a distinct pathology.', answer the user's query. |
What is the biomedical concept corresponding to 'mouse'? | [
"mouse (mus musculus)",
"mus musculus (house mouse)",
"house mouse (mus musculus)"
] | [
"mouse (mus <genus>)",
"mus musculus musculus (eastern european house mouse)",
"western european house mouse (mus musculus domesticus)",
"mus musculus domesticus (western european house mouse)"
] | Given the context 'VVDeltaK3L infections exhibited no differences in virulence among any of the mouse constructs, suggesting that PKR is not the exclusive target of K3L. Surprisingly, VVDeltaK3L did not disseminate to other tissues from the lung.', answer the user's query. |
What is the biomedical concept corresponding to 'saccharomyces cerevisiae'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"saccharomyces italicus (saccharo... | [
"saccharomyces globosus (saccharomyces uvarum)",
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces albicans (candida albicans)",
"saccharomyces hansenii (debaryomyces hansenii)"
] | Given the context 'Amino acid divergence between the CHS domain contributes to the different intracellular behaviour of Family II fungal chitin synthases in Saccharomyces cerevisiae.
', answer the user's query. |
What is the biomedical concept corresponding to 'saccharomyces cerevisiae'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"saccharomyces italicus (saccharo... | [
"saccharomyces globosus (saccharomyces uvarum)",
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces albicans (candida albicans)",
"saccharomyces hansenii (debaryomyces hansenii)"
] | Given the context 'Here we addressed the characterization of Family II fungal CSs by heterologous expression in Saccharomyces cerevisiae.', answer the user's query. |
What is the biomedical concept corresponding to 's. cerevisiae'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"baker's yeast (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"saccharomyces italicus (saccharo... | [
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces globosus (saccharomyces uvarum)",
"saccharomyces albicans (candida albicans)",
"saccharomyces hansenii (debaryomyces hansenii)"
] | Given the context 'Full-length CSs from classes V or IV were not functional when expressed in S. cerevisiae and accumulated in different intracellular compartments.', answer the user's query. |
What is the biomedical concept corresponding to 'aeropyrum pernix'? | [
"aeropyrum pernix"
] | [
"aeropyrum",
"ravinia pernix",
"aeropyrum camini",
"aeropyrum pernix k1 (aeropyrum pernix strain k1)"
] | Given the context 'Structural and functional insights into Aeropyrum pernix OppA, a member of a novel archaeal OppA subfamily.
', answer the user's query. |
What is the biomedical concept corresponding to 'aeropyrum pernix'? | [
"aeropyrum pernix"
] | [
"aeropyrum",
"ravinia pernix",
"aeropyrum camini",
"aeropyrum pernix k1 (aeropyrum pernix strain k1)"
] | Given the context 'In this study we gain insight into the structural and functional characterization of the Aeropyrum pernix oligopeptide-binding protein (OppA(Ap)) previously identified from the extracellular medium of an Aeropyrum pernix cell culture at late stationary phase.', answer the user's query. |
What is the biomedical concept corresponding to 'aeropyrum pernix'? | [
"aeropyrum pernix"
] | [
"aeropyrum",
"ravinia pernix",
"aeropyrum camini",
"aeropyrum pernix k1 (aeropyrum pernix strain k1)"
] | Given the context 'In this study we gain insight into the structural and functional characterization of the Aeropyrum pernix oligopeptide-binding protein (OppA(Ap)) previously identified from the extracellular medium of an Aeropyrum pernix cell culture at late stationary phase.', answer the user's query. |
What is the biomedical concept corresponding to 'sulfolobus solfataricus'? | [
"sulfolobus solfataricus (saccharolobus solfataricus)",
"saccharolobus solfataricus (sulfolobus solfataricus)"
] | [
"sulfolobus shibatae (saccharolobus shibatae)",
"sulfolobus acidocaldarius",
"saccharolobus shibatae (sulfolobus shibatae)",
"sulfolobus"
] | Given the context 'Finally, a new OppA from Sulfolobus solfataricus, SSO1288, was purified and preliminarily characterized, allowing the identification of a common structural/genetic organization shared by all "true" archaeal OppA proteins of the dipeptide/oligopeptide class.
', answer the user's query. |
What is the biomedical concept corresponding to 'achromobacter xylosoxidans a8'? | [
"achromobacter xylosoxydans (achromobacter xylosoxidans)",
"alcaligenes xylosoxidans (achromobacter xylosoxidans)",
"achromobacter xylosoxidans (achromobacter xylosoxidans subsp. xylosoxidans)",
"alcaligenes xylosoxydans (achromobacter xylosoxidans)",
"achromobacter xilosoxidans (achromobacter xylosoxidans)... | [
"achromobacter xylosoxidans x02736",
"achromobacter xylosoxidans jcm 9787",
"achromobacter agilis",
"achromobacter xylosoxidans a8 (achromobacter xylosoxidans strain a8)"
] | Given the context 'Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8.
Achromobacter xylosoxidans strain A8 was isolated from soil contaminated with polychlorinated biphenyls.', answer the user's query. |
What is the biomedical concept corresponding to 'achromobacter xylosoxidans strain a8'? | [
"achromobacter xylosoxydans (achromobacter xylosoxidans)",
"alcaligenes xylosoxidans (achromobacter xylosoxidans)",
"achromobacter xylosoxidans (achromobacter xylosoxidans subsp. xylosoxidans)",
"alcaligenes xylosoxydans (achromobacter xylosoxidans)",
"achromobacter xilosoxidans (achromobacter xylosoxidans)... | [
"achromobacter xylosoxidans x02736",
"achromobacter xylosoxidans jcm 9787",
"achromobacter xylosoxidans a8 (achromobacter xylosoxidans strain a8)",
"achromobacter xylosoxidans strain a8 (achromobacter xylosoxidans a8)"
] | Given the context 'Complete genome sequence of the haloaromatic acid-degrading bacterium Achromobacter xylosoxidans A8.
Achromobacter xylosoxidans strain A8 was isolated from soil contaminated with polychlorinated biphenyls.', answer the user's query. |
What is the biomedical concept corresponding to 'a. xylosoxidans'? | [
"alcaligenes xylosoxidans (achromobacter xylosoxidans)",
"alcaligenes xylosoxydans (achromobacter xylosoxidans)",
"achromobacter xylosoxydans (achromobacter xylosoxidans)",
"achromobacter xylosoxidans (achromobacter xylosoxidans subsp. xylosoxidans)",
"alcaligenes xylosoxidans subsp. xylosoxidans (achromoba... | [
"achromobacter xylosoxidans x02736",
"anoxybacter fermentans",
"alcaligenes xylosoxydans denitrificans (achromobacter denitrificans)",
"acidithrix ferrooxidans"
] | Given the context 'The genome of A. xylosoxidans consists of a 7-Mb chromosome and two large plasmids (98 kb and 248 kb).', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus subtilis'? | [
"vibrio subtilis (bacillus subtilis)",
"bacillus natto (bacillus subtilis)",
"bacillus mesentericus (bacillus subtilis)",
"bacillus subtilis (bacillus subtilis/bacillus globigii)",
"bacillus uniflagellatus (bacillus subtilis)"
] | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus amylolyticus (paenibacillus amylolyticus)",
"bacillus aerophilus"
] | Given the context 'Differential responses of Bacillus subtilis rRNA promoters to nutritional stress.
', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus subtilis'? | [
"vibrio subtilis (bacillus subtilis)",
"bacillus natto (bacillus subtilis)",
"bacillus mesentericus (bacillus subtilis)",
"bacillus subtilis (bacillus subtilis/bacillus globigii)",
"bacillus uniflagellatus (bacillus subtilis)"
] | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus amylolyticus (paenibacillus amylolyticus)",
"bacillus aerophilus"
] | Given the context 'The in vivo expression levels of four rRNA promoter pairs (rrnp(1)p(2)) of Bacillus subtilis were determined by employing single-copy lacZ fusions integrated at the amyE locus.', answer the user's query. |
What is the biomedical concept corresponding to 'b. subtilis'? | [
"vibrio subtilis (bacillus subtilis)",
"bacillus mesentericus (bacillus subtilis)",
"bacillus natto (bacillus subtilis)",
"bacillus subtilis (bacillus subtilis/bacillus globigii)"
] | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus amylolyticus (paenibacillus amylolyticus)",
"bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 19... | Given the context 'These data reveal the complex nature of B. subtilis rrn promoter regulation in response to stress, and they suggest that the P2 promoters may play a more prominent role in the stringent response.
', answer the user's query. |
What is the biomedical concept corresponding to 'shigella boydii'? | [
"shigella boydii"
] | [
"bacillus shigae (shigella dysenteriae)",
"shigella shigae (shigella dysenteriae)",
"shigella",
"shigella paradysenteriae (shigella flexneri)"
] | Given the context 'Biochemical characterization of UDP-Gal:GlcNAc-pyrophosphate-lipid Beta-1,4-Galactosyltransferase WfeD, a new enzyme from Shigella boydii type 14 that catalyzes the second step in O-antigen repeating-unit synthesis.
', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"glossus humanus (cardium humanum)"
] | Given the context 'Shigella is a Gram-negative human pathogen that causes diarrhea in humans.', answer the user's query. |
What is the biomedical concept corresponding to 'humans'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"glossus humanus (cardium humanum)"
] | Given the context 'Shigella is a Gram-negative human pathogen that causes diarrhea in humans.', answer the user's query. |
What is the biomedical concept corresponding to 'shigella boydii'? | [
"shigella boydii"
] | [
"bacillus shigae (shigella dysenteriae)",
"shigella shigae (shigella dysenteriae)",
"shigella",
"shigella paradysenteriae (shigella flexneri)"
] | Given the context 'The O antigen of Shigella boydii type 14 consists of repeating oligosaccharide units with the structure [->6-d-Galpalpha1->4-d-GlcpABeta1->6-d-GalpBeta1->4-d-GalpBeta1->4-d-GlcpNAcBeta1->]n.', answer the user's query. |
What is the biomedical concept corresponding to 'shigella boydii'? | [
"shigella boydii"
] | [
"bacillus shigae (shigella dysenteriae)",
"shigella shigae (shigella dysenteriae)",
"shigella",
"shigella paradysenteriae (shigella flexneri)"
] | Given the context 'The wfeD gene in the O-antigen gene cluster of Shigella boydii type 14 was proposed to encode a galactosyltransferase (GalT) involved in O-antigen synthesis.', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'WfeD was expressed in Escherichia coli, and the activity was characterized by using UDP-[^3H]Gal as the donor substrate as well as the synthetic acceptor substrate GlcNAcalpha-pyrophosphate-(CH2)11-O-phenyl.', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus subtilis'? | [
"vibrio subtilis (bacillus subtilis)",
"bacillus natto (bacillus subtilis)",
"bacillus mesentericus (bacillus subtilis)",
"bacillus subtilis (bacillus subtilis/bacillus globigii)",
"bacillus uniflagellatus (bacillus subtilis)"
] | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus amylolyticus (paenibacillus amylolyticus)",
"bacillus aerophilus"
] | Given the context 'Spatial regulation of histidine kinases governing biofilm formation in Bacillus subtilis.
Bacillus subtilis is able to form architecturally complex biofilms on solid medium due to the production of an extracellular matrix.', answer the user's query. |
What is the biomedical concept corresponding to 'bacillus subtilis'? | [
"vibrio subtilis (bacillus subtilis)",
"bacillus natto (bacillus subtilis)",
"bacillus mesentericus (bacillus subtilis)",
"bacillus subtilis (bacillus subtilis/bacillus globigii)",
"bacillus uniflagellatus (bacillus subtilis)"
] | [
"bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980))",
"bacillus cereus frankland and frankland 1887 (approved lists 1980) (bacillus cereus)",
"bacillus amylolyticus (paenibacillus amylolyticus)",
"bacillus aerophilus"
] | Given the context 'Spatial regulation of histidine kinases governing biofilm formation in Bacillus subtilis.
Bacillus subtilis is able to form architecturally complex biofilms on solid medium due to the production of an extracellular matrix.', answer the user's query. |
What is the biomedical concept corresponding to 'chlamydia trachomatis'? | [
"chlamydia trachomatis (chlamydozoon trachomatis)",
"chlamydozoon trachomatis (chlamydia trachomatis)",
"rickettsia trachomatis (chlamydia trachomatis)",
"rickettsia trachomae (chlamydia trachomatis)"
] | [
"chlamydia abortus (chlamydia psittaci (lillie 1930) page 1968)",
"chlamydophila abortus (chlamydia abortus)",
"chlamydia felis (chlamydia psittaci (lillie 1930) page 1968)",
"chlamydia psittaci (lillie 1930) page 1968 (chlamydia abortus)"
] | Given the context 'The atypical OmpR/PhoB response regulator ChxR from Chlamydia trachomatis forms homodimers in vivo and binds a direct repeat of nucleotide sequences.
', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'Altered regulation of the OmpF porin by Fis in Escherichia coli during an evolution experiment and between B and K-12 strains.
', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'We previously identified mutations in the global regulator-encoding gene fis that enhanced organismal fitness during a long-term evolution experiment with Escherichia coli.', answer the user's query. |
What is the biomedical concept corresponding to 'e. coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"entamoeba coli",
"'escherichia faecalis' (escherichia faecalis)"
] | Given the context 'We found that Fis controls the expression of the major porin-encoding gene ompF in the E. coli B-derived ancestral strain used in the evolution experiment, a relationship that has not been described before.', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'Fur and the novel regulator YqjI control transcription of the ferric reductase gene yqjH in Escherichia coli.
', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'In Escherichia coli, the yqjH gene encodes a putative ferric siderophore reductase that is also part of the Fur regulon.', answer the user's query. |
What is the biomedical concept corresponding to 'e. coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"entamoeba coli",
"'escherichia faecalis' (escherichia faecalis)"
] | Given the context 'Here we show that YqjH has ferric reductase activity and is required for iron homeostasis in E. coli.', answer the user's query. |
What is the biomedical concept corresponding to 'e. coli'? | [
"e. coli (escherichia coli)",
"bacterium coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"entamoeba coli",
"'escherichia faecalis' (escherichia faecalis)"
] | Given the context 'Furthermore, we found that elevated nickel stress levels disrupt iron homeostasis in E. coli and that deletion of yqjH increases nickel toxicity.', answer the user's query. |
What is the biomedical concept corresponding to 'methanocaldococcus jannaschii'? | [
"methanocaldococcus jannaschii (methanococcus jannaschii)",
"methanococcus jannaschii (methanocaldococcus jannaschii)"
] | [
"methanocaldococcus",
"methanocaldococcus indicus",
"methanothermus jannaschii ('methanothermus jannaschii')",
"methanocaldococcus lauensis"
] | Given the context 'Previous studies revealed that one species of methanogenic archaea, Methanocaldococcus jannaschii, is polyploid, while a second species, Methanothermobacter thermoautotrophicus, is diploid.', answer the user's query. |
What is the biomedical concept corresponding to 'methanothermobacter thermoautotrophicus'? | [
"methanothermobacter thermautotrophicus (methanobacterium thermautotrophicum corrig. zeikus and wolfe 1972 (approved lists 1980))",
"methanobacterium thermautotrophicum corrig. zeikus and wolfe 1972 (approved lists 1980) (methanothermobacter thermautotrophicus)",
"\"methanobacterium thermoautotrophicus\" zeikus... | [
"methanothermobacter thermophilus (methanobacterium thermophilum)",
"methanobacterium thermophilum (methanothermobacter thermophilus)",
"methanococcus thermolithotrophicus (methanothermococcus thermolithotrophicus)",
"methanothermobacter (methanobacter)"
] | Given the context 'Previous studies revealed that one species of methanogenic archaea, Methanocaldococcus jannaschii, is polyploid, while a second species, Methanothermobacter thermoautotrophicus, is diploid.', answer the user's query. |
What is the biomedical concept corresponding to 'methanosarcina acetivorans'? | [
"methanosarcina acetivorans"
] | [
"methanosarcina barkeri (methanosarcina barkerii)",
"methanococcus mazei (methanosarcina mazei)",
"methanosarcina barkerii (methanosarcina barkeri)",
"methanosarcina mazeii (methanosarcina mazei)"
] | Given the context 'To further investigate the distribution of ploidy in methanogenic archaea, species of two additional genera-Methanosarcina acetivorans and Methanococcus maripaludis-were investigated.', answer the user's query. |
What is the biomedical concept corresponding to 'methanococcus maripaludis'? | [
"methanococcus maripaludis (methanococcus deltae)",
"methanococcus deltae (methanococcus maripaludis)"
] | [
"methanobacterium paludis",
"methanogenium marinum",
"methylobacter marinus",
"methylomonas paludis"
] | Given the context 'To further investigate the distribution of ploidy in methanogenic archaea, species of two additional genera-Methanosarcina acetivorans and Methanococcus maripaludis-were investigated.', answer the user's query. |
What is the biomedical concept corresponding to 'm. acetivorans'? | [
"methanosarcina acetivorans"
] | [
"methylobacillus methanolivorans",
"micrococcus aceti (acetobacter aceti)",
"spectribacter acetivorans",
"albibacter methylovorans"
] | Given the context 'M. acetivorans was found to be polyploid during fast growth (t(D)', answer the user's query. |
What is the biomedical concept corresponding to 'm. maripaludis'? | [
"methanococcus maripaludis (methanococcus deltae)",
"methanococcus deltae (methanococcus maripaludis)"
] | [
"methanobacterium paludis",
"methylomonas paludis",
"methanococcus maripaludis ll (methanococcus maripaludis s2)",
"spodoptera marima"
] | Given the context 'M. maripaludis has the highest ploidy level found for any archaeal species, with up to 55 genome copies in exponential phase and ca. 30 in stationary phase.', answer the user's query. |
What is the biomedical concept corresponding to 'm. maripaludis'? | [
"methanococcus maripaludis (methanococcus deltae)",
"methanococcus deltae (methanococcus maripaludis)"
] | [
"methanobacterium paludis",
"methylomonas paludis",
"methanococcus maripaludis ll (methanococcus maripaludis s2)",
"spodoptera marima"
] | Given the context 'Making use of a previously constructed heterozygous mutant strain of the polyploid M. maripaludis we could show that in the absence of selection very fast equalization of genomes in M. maripaludis took place probably via a gene conversion mechanism.', answer the user's query. |
What is the biomedical concept corresponding to 'm. maripaludis'? | [
"methanococcus maripaludis (methanococcus deltae)",
"methanococcus deltae (methanococcus maripaludis)"
] | [
"methanobacterium paludis",
"methylomonas paludis",
"methanococcus maripaludis ll (methanococcus maripaludis s2)",
"spodoptera marima"
] | Given the context 'Making use of a previously constructed heterozygous mutant strain of the polyploid M. maripaludis we could show that in the absence of selection very fast equalization of genomes in M. maripaludis took place probably via a gene conversion mechanism.', answer the user's query. |
What is the biomedical concept corresponding to 'human cytomegalovirus'? | [
"human cytomegalovirus (human betaherpesvirus 5)",
"human herpesvirus 5 (human betaherpesvirus 5)"
] | [
"cytomegalovirus",
"unidentified cytomegalovirus",
"murine cytomegalovirus (mcmv) (murid betaherpesvirus 1)",
"mouse cytomegalovirus"
] | Given the context 'Identification of binary interactions between human cytomegalovirus virion proteins.
Human cytomegalovirus (HCMV) virions are composed of a DNA-containing nucleocapsid surrounded by a tegument layer and host-derived lipid envelope studded with virally encoded glycoproteins.', answer the user's query. |
What is the biomedical concept corresponding to 'human cytomegalovirus'? | [
"human cytomegalovirus (human betaherpesvirus 5)",
"human herpesvirus 5 (human betaherpesvirus 5)"
] | [
"cytomegalovirus",
"unidentified cytomegalovirus",
"murine cytomegalovirus (mcmv) (murid betaherpesvirus 1)",
"mouse cytomegalovirus"
] | Given the context 'Identification of binary interactions between human cytomegalovirus virion proteins.
Human cytomegalovirus (HCMV) virions are composed of a DNA-containing nucleocapsid surrounded by a tegument layer and host-derived lipid envelope studded with virally encoded glycoproteins.', answer the user's query. |
What is the biomedical concept corresponding to 'hcmv'? | [
"human cytomegalovirus (human betaherpesvirus 5)",
"human herpesvirus 5 (human betaherpesvirus 5)",
"human betaherpesvirus 5 (human herpesvirus type 5)",
"human herpesvirus type 5 (human betaherpesvirus 5)"
] | [
"cytomegalovirus",
"unidentified cytomegalovirus",
"human herpesvirus 1 (human alphaherpesvirus 1)",
"rodent herpesvirus"
] | Given the context 'Identification of binary interactions between human cytomegalovirus virion proteins.
Human cytomegalovirus (HCMV) virions are composed of a DNA-containing nucleocapsid surrounded by a tegument layer and host-derived lipid envelope studded with virally encoded glycoproteins.', answer the user's query. |
What is the biomedical concept corresponding to 'hcmv'? | [
"human cytomegalovirus (human betaherpesvirus 5)",
"human herpesvirus 5 (human betaherpesvirus 5)",
"human betaherpesvirus 5 (human herpesvirus type 5)",
"human herpesvirus type 5 (human betaherpesvirus 5)"
] | [
"cytomegalovirus",
"unidentified cytomegalovirus",
"human herpesvirus 1 (human alphaherpesvirus 1)",
"rodent herpesvirus"
] | Given the context 'Assembly of HCMV virions is poorly understood, especially with respect to acquisition of the tegument; however, it is thought to involve the stepwise addition of virion components through protein-protein interactions.', answer the user's query. |
What is the biomedical concept corresponding to 'hcmv'? | [
"human cytomegalovirus (human betaherpesvirus 5)",
"human herpesvirus 5 (human betaherpesvirus 5)",
"human betaherpesvirus 5 (human herpesvirus type 5)",
"human herpesvirus type 5 (human betaherpesvirus 5)"
] | [
"cytomegalovirus",
"unidentified cytomegalovirus",
"human herpesvirus 1 (human alphaherpesvirus 1)",
"rodent herpesvirus"
] | Given the context 'We sought to identify interactions among HCMV virion proteins using yeast two-hybrid analysis.', answer the user's query. |
What is the biomedical concept corresponding to 'yeast'? | [
"saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883)",
"baker's yeast (saccharomyces cerevisiae)",
"saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (saccharomyces cerevisiae)",
"mycoderma cerevisiae (saccharomyces cerevisiae)",
"brewer's yeast (saccharomyces ce... | [
"saccharomyces lactis (kluyveromyces lactis)",
"saccharomyces hansenii (debaryomyces hansenii)",
"saccharomyces albicans (candida albicans)",
"saccharomyces globosus (saccharomyces uvarum)"
] | Given the context 'We sought to identify interactions among HCMV virion proteins using yeast two-hybrid analysis.', answer the user's query. |
What is the biomedical concept corresponding to 'hcmv'? | [
"human cytomegalovirus (human betaherpesvirus 5)",
"human herpesvirus 5 (human betaherpesvirus 5)",
"human betaherpesvirus 5 (human herpesvirus type 5)",
"human herpesvirus type 5 (human betaherpesvirus 5)"
] | [
"cytomegalovirus",
"unidentified cytomegalovirus",
"human herpesvirus 1 (human alphaherpesvirus 1)",
"rodent herpesvirus"
] | Given the context 'We identified 24 interactions among HCMV virion proteins, including 13 novel interactions among tegument proteins and one novel interaction between capsid proteins.', answer the user's query. |
What is the biomedical concept corresponding to 'hcmv'? | [
"human cytomegalovirus (human betaherpesvirus 5)",
"human herpesvirus 5 (human betaherpesvirus 5)",
"human betaherpesvirus 5 (human herpesvirus type 5)",
"human herpesvirus type 5 (human betaherpesvirus 5)"
] | [
"cytomegalovirus",
"unidentified cytomegalovirus",
"human herpesvirus 1 (human alphaherpesvirus 1)",
"rodent herpesvirus"
] | Given the context 'In addition, we demonstrate three of these interactions in the context of HCMV infection.', answer the user's query. |
What is the biomedical concept corresponding to 'hcmv'? | [
"human cytomegalovirus (human betaherpesvirus 5)",
"human herpesvirus 5 (human betaherpesvirus 5)",
"human betaherpesvirus 5 (human herpesvirus type 5)",
"human herpesvirus type 5 (human betaherpesvirus 5)"
] | [
"cytomegalovirus",
"unidentified cytomegalovirus",
"human herpesvirus 1 (human alphaherpesvirus 1)",
"rodent herpesvirus"
] | Given the context 'This study reveals several new protein-protein interactions among HCMV tegument proteins, some of which are likely important for HCMV replication and pathogenesis.
', answer the user's query. |
What is the biomedical concept corresponding to 'hcmv'? | [
"human cytomegalovirus (human betaherpesvirus 5)",
"human herpesvirus 5 (human betaherpesvirus 5)",
"human betaherpesvirus 5 (human herpesvirus type 5)",
"human herpesvirus type 5 (human betaherpesvirus 5)"
] | [
"cytomegalovirus",
"unidentified cytomegalovirus",
"human herpesvirus 1 (human alphaherpesvirus 1)",
"rodent herpesvirus"
] | Given the context 'This study reveals several new protein-protein interactions among HCMV tegument proteins, some of which are likely important for HCMV replication and pathogenesis.
', answer the user's query. |
What is the biomedical concept corresponding to 'pseudomonas aeruginosa'? | [
"pseudomonas aeruginosa (pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980))",
"pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980) (pseudomonas aeruginosa)",
"bacillus aeruginosus (pseudomonas aeruginosa)",
"pseudomonas pyocyanea (pseudomonas aeruginosa)",
"bact... | [
"pseudomonas nosocomialis (stutzerimonas nosocomialis)",
"pseudomonas aeruginosa c",
"pseudomonas aeruginosa pa1",
"pseudomonas paralactis"
] | Given the context 'Acyl-homoserine lactone binding to and stability of the orphan Pseudomonas aeruginosa quorum-sensing signal receptor QscR.
', answer the user's query. |
What is the biomedical concept corresponding to 'pseudomonas aeruginosa'? | [
"pseudomonas aeruginosa (pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980))",
"pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980) (pseudomonas aeruginosa)",
"bacillus aeruginosus (pseudomonas aeruginosa)",
"pseudomonas pyocyanea (pseudomonas aeruginosa)",
"bact... | [
"pseudomonas nosocomialis (stutzerimonas nosocomialis)",
"pseudomonas aeruginosa c",
"pseudomonas aeruginosa pa1",
"pseudomonas paralactis"
] | Given the context 'The Pseudomonas aeruginosa transcription factor QscR responds to a variety of fatty acyl-homoserine lactones (HSLs), including N-3-oxododecanoyl-HSL (3OC12-HSL), which is produced and detected by the P. aeruginosa quorum-sensing circuit LasI', answer the user's query. |
What is the biomedical concept corresponding to 'p. aeruginosa'? | [
"pseudomonas aeruginosa (pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980))",
"pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980) (pseudomonas aeruginosa)",
"pseudomonas pyocyanea (pseudomonas aeruginosa)",
"bacillus aeruginosus (pseudomonas aeruginosa)",
"baci... | [
"pasteurella pestis (yersinia pestis)",
"pseudomonas aeruginosa c",
"pseudomonas nosocomialis (stutzerimonas nosocomialis)",
"pasteurella aerogenes ([pasteurella] aerogenes)"
] | Given the context 'The Pseudomonas aeruginosa transcription factor QscR responds to a variety of fatty acyl-homoserine lactones (HSLs), including N-3-oxododecanoyl-HSL (3OC12-HSL), which is produced and detected by the P. aeruginosa quorum-sensing circuit LasI', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'We also obtained soluble QscR from recombinant Escherichia coli grown in the presence of N-3-oxohexanoyl-HSL (3OC6-HSL) instead of 3OC12-HSL, and because 3OC6-HSL bound much more loosely to QscR than other acyl-HSLs tested, we were able to exchange 3OC6-HSL with other acyl-HSLs in vitro and then estimate binding affinities of QscR for different acyl-HSLs and for target DNA.', answer the user's query. |
What is the biomedical concept corresponding to 'hepatitis delta virus'? | [
"hepatitis d virus (hepatitis delta virus)",
"hepatitis delta virus (hdv (hepatitis delta virus))",
"hdv (hepatitis delta virus) (hepatitis delta virus)",
"hepatitis delta virus hdv (hepatitis delta virus)"
] | [
"hepatitis d virus 1",
"hepatitis delta virus (isolate italian) (hepatitis d virus (isolate italian))",
"hepatitis d virus (isolate italian) (hepatitis delta virus (isolate italian))",
"duck hepatitis virus, dhbv (duck hepatitis b virus)"
] | Given the context 'Hepatitis delta virus.
Hepatitis delta virus (HDV) is a small, defective RNA virus that can infect only individuals who have hepatitis B virus (HBV); worldwide more than 15 million people are co-infected.', answer the user's query. |
What is the biomedical concept corresponding to 'hepatitis delta virus'? | [
"hepatitis d virus (hepatitis delta virus)",
"hepatitis delta virus (hdv (hepatitis delta virus))",
"hdv (hepatitis delta virus) (hepatitis delta virus)",
"hepatitis delta virus hdv (hepatitis delta virus)"
] | [
"hepatitis d virus 1",
"hepatitis delta virus (isolate italian) (hepatitis d virus (isolate italian))",
"hepatitis d virus (isolate italian) (hepatitis delta virus (isolate italian))",
"duck hepatitis virus, dhbv (duck hepatitis b virus)"
] | Given the context 'Hepatitis delta virus.
Hepatitis delta virus (HDV) is a small, defective RNA virus that can infect only individuals who have hepatitis B virus (HBV); worldwide more than 15 million people are co-infected.', answer the user's query. |
What is the biomedical concept corresponding to 'hdv'? | [
"hdv (hepatitis delta virus) (hepatitis delta virus)",
"hepatitis delta virus (hdv (hepatitis delta virus))",
"hepatitis delta virus hdv (hepatitis delta virus)",
"hepatitis d virus (hepatitis delta virus)"
] | [
"hdv-1 (deltavirus italiense)",
"hdv-2 (deltavirus japanense)",
"hdv-4 (deltavirus taiwanense)",
"hdv-3 (deltavirus peruense)"
] | Given the context 'Hepatitis delta virus.
Hepatitis delta virus (HDV) is a small, defective RNA virus that can infect only individuals who have hepatitis B virus (HBV); worldwide more than 15 million people are co-infected.', answer the user's query. |
What is the biomedical concept corresponding to 'hepatitis b virus'? | [
"human hepatitis b virus (hepatitis b virus)",
"hepatitis b virus, hbv (hepatitis b virus)",
"hepatitis b virus hbv (hepatitis b virus)",
"hepatitis b virus (hbv) (hepatitis b virus)",
"hbv (hepatitis b virus) (hepatitis b virus)"
] | [
"hepatitis gb virus b (gb virus-b)",
"hepatitis b virus 2",
"duck hepatitis b virus (dhbv (duck hepatitis b virus))",
"horseshoe bat hepatitis b virus (hbhbv)"
] | Given the context 'Hepatitis delta virus.
Hepatitis delta virus (HDV) is a small, defective RNA virus that can infect only individuals who have hepatitis B virus (HBV); worldwide more than 15 million people are co-infected.', answer the user's query. |
What is the biomedical concept corresponding to 'hbv'? | [
"hepatitis b virus, hbv (hepatitis b virus)",
"hbv (hepatitis b virus) (hepatitis b virus)",
"hepatitis b virus (hbv) (hepatitis b virus)",
"hepatitis b virus hbv (hepatitis b virus)",
"human hepatitis b virus hbv (hepatitis b virus)"
] | [
"non-human hbv",
"duck hepatitis b virus (dhbv (duck hepatitis b virus))",
"dhbv (duck hepatitis b virus) (duck hepatitis b virus)",
"hepatitis b-type viruses (hepadnaviridae)"
] | Given the context 'Hepatitis delta virus.
Hepatitis delta virus (HDV) is a small, defective RNA virus that can infect only individuals who have hepatitis B virus (HBV); worldwide more than 15 million people are co-infected.', answer the user's query. |
What is the biomedical concept corresponding to 'hdv'? | [
"hdv (hepatitis delta virus) (hepatitis delta virus)",
"hepatitis delta virus (hdv (hepatitis delta virus))",
"hepatitis delta virus hdv (hepatitis delta virus)",
"hepatitis d virus (hepatitis delta virus)"
] | [
"hdv-1 (deltavirus italiense)",
"hdv-2 (deltavirus japanense)",
"hdv-4 (deltavirus taiwanense)",
"hdv-3 (deltavirus peruense)"
] | Given the context 'There are eight reported genotypes of HDV with unexplained variations in their geographical distribution and pathogenicity.', answer the user's query. |
What is the biomedical concept corresponding to 'hepatitis d'? | [
"hepatitis d virus (hepatitis delta virus)",
"hepatitis delta virus (hdv (hepatitis delta virus))",
"hepatitis delta virus hdv (hepatitis delta virus)",
"hdv (hepatitis delta virus) (hepatitis delta virus)"
] | [
"hepatovirus d",
"hepatitis a virus (hepatovirus a)",
"hepatitis d virus 1",
"hepatitis d virus (isolate italian) (hepatitis delta virus (isolate italian))"
] | Given the context 'The hepatitis D virion is composed of a coat of HBV envelope proteins surrounding the nucleocapsid, which consists of a single-stranded, circular RNA genome complexed with delta antigen, the viral protein.', answer the user's query. |
What is the biomedical concept corresponding to 'hbv'? | [
"hepatitis b virus, hbv (hepatitis b virus)",
"hbv (hepatitis b virus) (hepatitis b virus)",
"hepatitis b virus (hbv) (hepatitis b virus)",
"hepatitis b virus hbv (hepatitis b virus)",
"human hepatitis b virus hbv (hepatitis b virus)"
] | [
"non-human hbv",
"duck hepatitis b virus (dhbv (duck hepatitis b virus))",
"dhbv (duck hepatitis b virus) (duck hepatitis b virus)",
"hepatitis b-type viruses (hepadnaviridae)"
] | Given the context 'The hepatitis D virion is composed of a coat of HBV envelope proteins surrounding the nucleocapsid, which consists of a single-stranded, circular RNA genome complexed with delta antigen, the viral protein.', answer the user's query. |
What is the biomedical concept corresponding to 'hdv'? | [
"hdv (hepatitis delta virus) (hepatitis delta virus)",
"hepatitis delta virus (hdv (hepatitis delta virus))",
"hepatitis delta virus hdv (hepatitis delta virus)",
"hepatitis d virus (hepatitis delta virus)"
] | [
"hdv-1 (deltavirus italiense)",
"hdv-2 (deltavirus japanense)",
"hdv-4 (deltavirus taiwanense)",
"hdv-3 (deltavirus peruense)"
] | Given the context 'HDV is clinically important because although it suppresses HBV replication, it causes severe liver disease with rapid progression to cirrhosis and hepatic decompensation.', answer the user's query. |
What is the biomedical concept corresponding to 'hbv'? | [
"hepatitis b virus, hbv (hepatitis b virus)",
"hbv (hepatitis b virus) (hepatitis b virus)",
"hepatitis b virus (hbv) (hepatitis b virus)",
"hepatitis b virus hbv (hepatitis b virus)",
"human hepatitis b virus hbv (hepatitis b virus)"
] | [
"non-human hbv",
"duck hepatitis b virus (dhbv (duck hepatitis b virus))",
"dhbv (duck hepatitis b virus) (duck hepatitis b virus)",
"hepatitis b-type viruses (hepadnaviridae)"
] | Given the context 'HDV is clinically important because although it suppresses HBV replication, it causes severe liver disease with rapid progression to cirrhosis and hepatic decompensation.', answer the user's query. |
What is the biomedical concept corresponding to 'hdv'? | [
"hdv (hepatitis delta virus) (hepatitis delta virus)",
"hepatitis delta virus (hdv (hepatitis delta virus))",
"hepatitis delta virus hdv (hepatitis delta virus)",
"hepatitis d virus (hepatitis delta virus)"
] | [
"hdv-1 (deltavirus italiense)",
"hdv-2 (deltavirus japanense)",
"hdv-4 (deltavirus taiwanense)",
"hdv-3 (deltavirus peruense)"
] | Given the context 'The prevalence of HDV is declining in some endemic areas but increasing in northern and central Europe because of immigration.', answer the user's query. |
What is the biomedical concept corresponding to 'hdv'? | [
"hdv (hepatitis delta virus) (hepatitis delta virus)",
"hepatitis delta virus (hdv (hepatitis delta virus))",
"hepatitis delta virus hdv (hepatitis delta virus)",
"hepatitis d virus (hepatitis delta virus)"
] | [
"hdv-1 (deltavirus italiense)",
"hdv-2 (deltavirus japanense)",
"hdv-4 (deltavirus taiwanense)",
"hdv-3 (deltavirus peruense)"
] | Given the context 'Treatment of HDV is with pegylated interferon alfa; however, response rates are poor.', answer the user's query. |
What is the biomedical concept corresponding to 'hdv'? | [
"hdv (hepatitis delta virus) (hepatitis delta virus)",
"hepatitis delta virus (hdv (hepatitis delta virus))",
"hepatitis delta virus hdv (hepatitis delta virus)",
"hepatitis d virus (hepatitis delta virus)"
] | [
"hdv-1 (deltavirus italiense)",
"hdv-2 (deltavirus japanense)",
"hdv-4 (deltavirus taiwanense)",
"hdv-3 (deltavirus peruense)"
] | Given the context 'Increased understanding of the molecular virology of HDV will identify novel therapeutic targets for this most severe form of chronic viral hepatitis.
', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'Role of the F1 region in the Escherichia coli aerotaxis receptor Aer.
In Escherichia coli, the aerotaxis receptor Aer is an atypical receptor because it senses intracellular redox potential.', answer the user's query. |
What is the biomedical concept corresponding to 'escherichia coli'? | [
"bacterium coli (escherichia coli)",
"e. coli (escherichia coli)",
"bacillus coli (escherichia coli)",
"enterococcus coli (escherichia coli)",
"bacterium coli commune (escherichia coli)"
] | [
"escherichia",
"escherichia faecalis ('escherichia faecalis')",
"'escherichia faecalis' (escherichia faecalis)",
"escherichia coli c"
] | Given the context 'Role of the F1 region in the Escherichia coli aerotaxis receptor Aer.
In Escherichia coli, the aerotaxis receptor Aer is an atypical receptor because it senses intracellular redox potential.', answer the user's query. |
What is the biomedical concept corresponding to 'pseudomonas aeruginosa'? | [
"pseudomonas aeruginosa (pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980))",
"pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980) (pseudomonas aeruginosa)",
"bacillus aeruginosus (pseudomonas aeruginosa)",
"pseudomonas pyocyanea (pseudomonas aeruginosa)",
"bact... | [
"pseudomonas nosocomialis (stutzerimonas nosocomialis)",
"pseudomonas aeruginosa c",
"pseudomonas aeruginosa pa1",
"pseudomonas paralactis"
] | Given the context 'The peptidoglycan-binding protein FimV promotes assembly of the Pseudomonas aeruginosa type IV pilus secretin.
', answer the user's query. |
What is the biomedical concept corresponding to 'pseudomonas aeruginosa'? | [
"pseudomonas aeruginosa (pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980))",
"pseudomonas aeruginosa (schroeter 1872) migula 1900 (approved lists 1980) (pseudomonas aeruginosa)",
"bacillus aeruginosus (pseudomonas aeruginosa)",
"pseudomonas pyocyanea (pseudomonas aeruginosa)",
"bact... | [
"pseudomonas nosocomialis (stutzerimonas nosocomialis)",
"pseudomonas aeruginosa c",
"pseudomonas aeruginosa pa1",
"pseudomonas paralactis"
] | Given the context 'The Pseudomonas aeruginosa inner membrane protein FimV is among several proteins of unknown function required for type IV pilus-mediated twitching motility, arising from extension and retraction of pili from their site of assembly in the inner membrane.', answer the user's query. |
What is the biomedical concept corresponding to 'bacteriophage'? | [
"bacteriophages (bacteriophage sp.)",
"bacteriophage (bacteriophage sp.)",
"phage sp. (bacteriophage sp.)",
"unidentified bacteriophage (bacteriophage sp.)",
"unidentified phage (bacteriophage sp.)"
] | [
"filamentous phage (filamentous bacteriophage)",
"filamentous bacteriophage (filamentous phage)",
"bacterial virus (inoviridae)",
"bacterial viruses (inoviridae)"
] | Given the context 'Although fimV mutants are nonmotile, they are susceptible to killing by pilus-specific bacteriophage, a hallmark of retractable surface pili.', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"glossus humanus (cardium humanum)"
] | Given the context 'Human resources for health in southeast Asia: shortages, distributional challenges, and international trade in health services.
', answer the user's query. |
What is the biomedical concept corresponding to 'human'? | [
"human (homo sapiens)",
"homo sapiens (human)"
] | [
"humans (homo)",
"homo (humans)",
"macrobiotus sapiens",
"glossus humanus (cardium humanum)"
] | Given the context 'To ensure that vital human resources for health are available to meet the needs of the populations that they serve, migration management and retention strategies need to be integrated into ongoing efforts to strengthen health systems in southeast Asia.', answer the user's query. |
What is the biomedical concept corresponding to 'hepatitis c virus'? | [
"hepatitis c virus (hepacivirus hominis)",
"human hepatitis c virus (hepacivirus hominis)",
"hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis virus c hcv (hepacivirus hominis)"
] | [
"hepatitis c viruses (hepacivirus)",
"human hepatitis b virus (hepatitis b virus)",
"hepatitis a virus (hepatovirus a)",
"hepatitis b virus, hbv (hepatitis b virus)"
] | Given the context 'Double-antigen sandwich ELISA for the detection of anti-hepatitis C virus antibodies.
', answer the user's query. |
What is the biomedical concept corresponding to 'hcv'? | [
"hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis virus c hcv (hepacivirus hominis)",
"hepatitis c virus (hepacivirus hominis)",
"human hepatitis c virus (hepacivirus hominis)"
] | [
"hepatitis c viruses (hepacivirus)",
"hcv-h (hepatitis c virus (isolate h))",
"hepatitis c-like viruses (hepacivirus)",
"human hepatitis circovirus"
] | Given the context 'A double-antigen sandwich ELISA was developed a detection of HCV antibodies by a recombinant multi-epitope HCV antigen and a biotin-streptavidin amplification system.', answer the user's query. |
What is the biomedical concept corresponding to 'hcv'? | [
"hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis virus c hcv (hepacivirus hominis)",
"hepatitis c virus (hepacivirus hominis)",
"human hepatitis c virus (hepacivirus hominis)"
] | [
"hepatitis c viruses (hepacivirus)",
"hcv-h (hepatitis c virus (isolate h))",
"hepatitis c-like viruses (hepacivirus)",
"human hepatitis circovirus"
] | Given the context 'A double-antigen sandwich ELISA was developed a detection of HCV antibodies by a recombinant multi-epitope HCV antigen and a biotin-streptavidin amplification system.', answer the user's query. |
What is the biomedical concept corresponding to 'hcv'? | [
"hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis virus c hcv (hepacivirus hominis)",
"hepatitis c virus (hepacivirus hominis)",
"human hepatitis c virus (hepacivirus hominis)"
] | [
"hepatitis c viruses (hepacivirus)",
"hcv-h (hepatitis c virus (isolate h))",
"hepatitis c-like viruses (hepacivirus)",
"human hepatitis circovirus"
] | Given the context 'Three plasma specimens from 1708 individuals who were suspected previously to be HCV-positive using an HCV antibody diagnostic kit (Chuangxin, Xiamen, China) displayed negative results when using the ELISA.', answer the user's query. |
What is the biomedical concept corresponding to 'hcv'? | [
"hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis virus c hcv (hepacivirus hominis)",
"hepatitis c virus (hepacivirus hominis)",
"human hepatitis c virus (hepacivirus hominis)"
] | [
"hepatitis c viruses (hepacivirus)",
"hcv-h (hepatitis c virus (isolate h))",
"hepatitis c-like viruses (hepacivirus)",
"human hepatitis circovirus"
] | Given the context 'Three plasma specimens from 1708 individuals who were suspected previously to be HCV-positive using an HCV antibody diagnostic kit (Chuangxin, Xiamen, China) displayed negative results when using the ELISA.', answer the user's query. |
What is the biomedical concept corresponding to 'hcv'? | [
"hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis virus c hcv (hepacivirus hominis)",
"hepatitis c virus (hepacivirus hominis)",
"human hepatitis c virus (hepacivirus hominis)"
] | [
"hepatitis c viruses (hepacivirus)",
"hcv-h (hepatitis c virus (isolate h))",
"hepatitis c-like viruses (hepacivirus)",
"human hepatitis circovirus"
] | Given the context 'In 43 donors and 14 patients with chronic hepatitis C, the detectable rates for HCV IgM by both ELISA and the HCV anti-IgM detection reagents (Huimin, Shenyang, China) were 100%, and the detectable rate for HCV IgG using an indirect HCV-antibody detection kit (GWK, Beijing, China) was 98.3%.', answer the user's query. |
What is the biomedical concept corresponding to 'hcv'? | [
"hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis virus c hcv (hepacivirus hominis)",
"hepatitis c virus (hepacivirus hominis)",
"human hepatitis c virus (hepacivirus hominis)"
] | [
"hepatitis c viruses (hepacivirus)",
"hcv-h (hepatitis c virus (isolate h))",
"hepatitis c-like viruses (hepacivirus)",
"human hepatitis circovirus"
] | Given the context 'In 43 donors and 14 patients with chronic hepatitis C, the detectable rates for HCV IgM by both ELISA and the HCV anti-IgM detection reagents (Huimin, Shenyang, China) were 100%, and the detectable rate for HCV IgG using an indirect HCV-antibody detection kit (GWK, Beijing, China) was 98.3%.', answer the user's query. |
What is the biomedical concept corresponding to 'hcv'? | [
"hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis virus c hcv (hepacivirus hominis)",
"hepatitis c virus (hepacivirus hominis)",
"human hepatitis c virus (hepacivirus hominis)"
] | [
"hepatitis c viruses (hepacivirus)",
"hcv-h (hepatitis c virus (isolate h))",
"hepatitis c-like viruses (hepacivirus)",
"human hepatitis circovirus"
] | Given the context 'In 43 donors and 14 patients with chronic hepatitis C, the detectable rates for HCV IgM by both ELISA and the HCV anti-IgM detection reagents (Huimin, Shenyang, China) were 100%, and the detectable rate for HCV IgG using an indirect HCV-antibody detection kit (GWK, Beijing, China) was 98.3%.', answer the user's query. |
What is the biomedical concept corresponding to 'hcv'? | [
"hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis virus c hcv (hepacivirus hominis)",
"hepatitis c virus (hepacivirus hominis)",
"human hepatitis c virus (hepacivirus hominis)"
] | [
"hepatitis c viruses (hepacivirus)",
"hcv-h (hepatitis c virus (isolate h))",
"hepatitis c-like viruses (hepacivirus)",
"human hepatitis circovirus"
] | Given the context 'In 43 donors and 14 patients with chronic hepatitis C, the detectable rates for HCV IgM by both ELISA and the HCV anti-IgM detection reagents (Huimin, Shenyang, China) were 100%, and the detectable rate for HCV IgG using an indirect HCV-antibody detection kit (GWK, Beijing, China) was 98.3%.', answer the user's query. |
What is the biomedical concept corresponding to 'hcv'? | [
"hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis virus c hcv (hepacivirus hominis)",
"hepatitis c virus (hepacivirus hominis)",
"human hepatitis c virus (hepacivirus hominis)"
] | [
"hepatitis c viruses (hepacivirus)",
"hcv-h (hepatitis c virus (isolate h))",
"hepatitis c-like viruses (hepacivirus)",
"human hepatitis circovirus"
] | Given the context 'It did not give false-negative results otherwise IgM was undetectable using an indirect HCV-antibody detection kit.', answer the user's query. |
What is the biomedical concept corresponding to 'hcv'? | [
"hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis c virus hcv (hepacivirus hominis)",
"human hepatitis virus c hcv (hepacivirus hominis)",
"hepatitis c virus (hepacivirus hominis)",
"human hepatitis c virus (hepacivirus hominis)"
] | [
"hepatitis c viruses (hepacivirus)",
"hcv-h (hepatitis c virus (isolate h))",
"hepatitis c-like viruses (hepacivirus)",
"human hepatitis circovirus"
] | Given the context 'This ELISA provides another method for the detection of HCV antibodies.
', answer the user's query. |
What is the biomedical concept corresponding to 'sordaria macrospora'? | [
"sordaria macrospora"
] | [
"sclerophthora macrospora",
"truncospora macrospora",
"apiosporella macrospora (ascochyta macrospora)",
"sordaria macrospora k-hell"
] | Given the context 'Perithecium morphogenesis in Sordaria macrospora.
', answer the user's query. |
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