instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
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<Instruct>: Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention... | <Mentions>: [alfalfa; sinorhizobium meliloti; sinorhizobium medicae]
<Options>: A: sinorhizobium meliloti m10
B: medicago murex
C: sinorhizobium meliloti kh30a
D: rhizobium meliloti (aka sinorhizobium meliloti)
E: mesorhizobium japonicum
F: sinorhizobium meliloti usda 1021
G: barrel medic (aka medicago truncatula)
H: m... | [N; D; K] |
<Instruct>: Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention... | <Mentions>: [alfalfa; sinorhizobium meliloti; sinorhizobium medicae]
<Options>: A: rhizobium meliloti (aka sinorhizobium meliloti)
B: sinorhizobium meliloti kh30a
C: sinorhizobium meliloti m10
D: rhizobium gallicum
E: medicago marina
F: sinorhizobium meliloti kh12g
G: medicago heyniana
H: medicago arborea
I: mesorhizob... | [J; A; N] |
<Instruct>: Given the context 'Interestingly, the strongest sequence similarity observed was between the partial nod sequences of Rhizobium mongolense USDA 1844 and the corresponding LPU83 nod genes sequences.', select the correct biomedical concept for each mention using the provided options. Answer by listing the sel... | <Mentions>: [rhizobium mongolense usda 1844; lpu83]
<Options>: A: yeast expression vector pjg483
B: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
C: ulva picorna-like virus 3
D: lon
E: rhizobium kunmingense
F: saccharomyces cerevisiae sgu57
G: rhizobium binae
H: shuttle vector pmtl8... | [B; K] |
<Instruct>: Given the context 'Interestingly, the strongest sequence similarity observed was between the partial nod sequences of Rhizobium mongolense USDA 1844 and the corresponding LPU83 nod genes sequences.', select the correct biomedical concept for each mention using the provided options. Answer by listing the sel... | <Mentions>: [rhizobium mongolense usda 1844; lpu83]
<Options>: A: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
B: llap 9 (aka legionella-like amoebal pathogen 9)
C: rhizobium lemnae
D: rhizobium mongolense usda 1844 (rhizobium mongolense strain usda 1844) (aka rhizobium mongolense ... | [A; K] |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept for each... | <Mentions>: [lpu83; r. mongolense 1844; rhizobium sp. strain lpu83; alfalfa]
<Options>: A: medicago italica (medica italica) (aka medicago italica)
B: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
C: rhizobium sp. usda 3883
D: medicago lupulina
E: rhabdosargus niger
F: lon
G: bacter... | [U; B; U; O] |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept for each... | <Mentions>: [lpu83; r. mongolense 1844; rhizobium sp. strain lpu83; alfalfa]
<Options>: A: medica italica (aka medicago italica)
B: rhizobium sp. lr78
C: bacterium lgm83
D: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
E: mammalian expression vector psa83
F: rhodococcus oryzae
G: lu... | [U; D; U; G] |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept for each... | <Mentions>: [lpu83; r. mongolense 1844; rhizobium sp. strain lpu83; alfalfa]
<Options>: A: rhododendron macrophyllum
B: rhizobium sp. ml83
C: llap 9 (aka legionella-like amoebal pathogen 9)
D: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
E: rhipicephalus rutilus
F: barrel medic (ak... | [U; D; U; K] |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept for each... | <Mentions>: [lpu83; r. mongolense 1844; rhizobium sp. strain lpu83; alfalfa]
<Options>: A: rhododrilus
B: rhizobium terricola
C: rhizobium sp. p-8
D: verticillium alfalfae
E: rhizobium sp. r46283
F: mammalian expression vector psa83
G: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
H... | [U; G; U; O] |
<Instruct>: Given the context 'Remarkably, while in strain LPU83 most of the NFs were sulfated in their reducing terminal residue, none of the NFs isolated from the nodH mutant LPU83-H were sulfated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected opti... | <Mentions>: [lpu83; lpu83-h]
<Options>: A: urt cloning vector pkp77
B: mammalian expression vector ppal
C: ulva picorna-like virus 1
D: mammalian expression vector psa83
E: legionella-like amoebal pathogen 8 (llap 8) (aka legionella-like amoebal pathogen 8)
F: hubei partiti-like virus 58
G: shuttle vector pmtl83151
H: ... | [K; K] |
<Instruct>: Given the context 'Remarkably, while in strain LPU83 most of the NFs were sulfated in their reducing terminal residue, none of the NFs isolated from the nodH mutant LPU83-H were sulfated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected opti... | <Mentions>: [lpu83; lpu83-h]
<Options>: A: mammalian expression vector ppal
B: yeast expression vector pjg483
C: bacterium urfm83
D: hubei partiti-like virus 48
E: helianthus annuus leaf-associated partitivirus 3
F: firstpapillomavirinae pv-hmu-1
G: ula
H: listeria phage lp-083-1
I: bacterium lgm83
J: llap 9 (aka legio... | [K; K] |
<Instruct>: Given the context 'The evidence obtained supports the notion that the sulfate decoration of NFs in LPU83 is not necessary for alfalfa nodulation.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by ... | <Mentions>: [lpu83; alfalfa]
<Options>: A: medica italica (aka medicago italica)
B: bacterium urfm83
C: verticillium alfalfae
D: saccharomyces cerevisiae sgu57
E: medicago arborea
F: fungal clone uuf-68
G: barrel medic (aka medicago truncatula)
H: lon
I: ulva picorna-like virus 1
J: lucerne (aka medicago sativa)
K: Non... | [K; J] |
<Instruct>: Given the context 'The evidence obtained supports the notion that the sulfate decoration of NFs in LPU83 is not necessary for alfalfa nodulation.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by ... | <Mentions>: [lpu83; alfalfa]
<Options>: A: arctic ground squirrel (aka urocitellus parryii)
B: medicago (medics) (aka medicago)
C: llap 9 (aka legionella-like amoebal pathogen 9)
D: medicago hypogaea
E: medicago hybrida (trigonella hybrida) (aka medicago hybrida)
F: saccharomyces cerevisiae sgu57
G: lon
H: alfalfa (aka... | [K; H] |
<Instruct>: Given the context 'Plantazolicin, a novel microcin B17/streptolysin S-like natural product from Bacillus amyloliquefaciens FZB42.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus amyloliquefaciens fzb42]
<Options>: A: bacillus amyloliquefaciens fzb42 (aka bacillus velezensis fzb42)
B: bacillus amyloliquefaciens (bacillus amyloliquefaciens subsp. amyloliquefaciens) (aka bacillus amyloliquefaciens)
C: bacillus thermoamyloliquefaciens ('bacillus thermoamyloliquefaciens') (aka... | [B] |
<Instruct>: Given the context 'Here we report on a novel thiazole/oxazole-modified microcin (TOMM) from Bacillus amyloliquefaciens FZB42, a Gram-positive soil bacterium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, sep... | <Mentions>: [bacillus amyloliquefaciens fzb42]
<Options>: A: bacillus amyloliquefaciens ebl11
B: bacillus amyloliquefaciens (bacillus amyloliquefaciens subsp. amyloliquefaciens) (aka bacillus amyloliquefaciens)
C: bacillus amylolyticus (aka paenibacillus amylolyticus)
D: bacillus amyloliquefaciens umaf6639
E: bacillus ... | [B] |
<Instruct>: Given the context 'Like microcin B17 and streptolysin S, the TOMM from B. amyloliquefaciens FZB42 undergoes extensive posttranslational modification to become a bioactive natural product.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected opti... | <Mentions>: [b. amyloliquefaciens fzb42]
<Options>: A: bacillus amyloliquefaciens (bacillus amyloliquefaciens subsp. amyloliquefaciens) (aka bacillus amyloliquefaciens)
B: bacillus amyloliquefaciens group (operational group b. amyloliquefaciens) (aka bacillus amyloliquefaciens group)
C: bacillus amyloliquefaciens ap143... | [A] |
<Instruct>: Given the context 'Mismatch repair modulation of MutY activity drives Bacillus subtilis stationary-phase mutagenesis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus subtilis]
<Options>: A: bacillus mesentericus (aka bacillus subtilis)
B: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
C: bacillus aerius
D: bacillus amylolyticus (aka paenibacillus amylolyticus)
E: sowerbaea subtilis
F: None of th... | [A] |
<Instruct>: Given the context 'Oxidative stress-induced DNA damage has been associated with generation of adaptive His(+) and Met(+) but not Leu(+) revertants in strain Bacillus subtilis YB955 (hisC952 metB5 leuC427).', select the correct biomedical concept for each mention using the provided options. Answer by listing... | <Mentions>: [strain bacillus subtilis yb955 (hisc952 metb5 leuc427)]
<Options>: A: bacillus sp. 105
B: bacillus sp. y995
C: bacillus cereus strain is075 (aka bacillus cereus is075)
D: bacillus tyrosalemonis (aka bacillus sp. yas1)
E: bacillus sp. yb
F: None of the above. | [F] |
<Instruct>: Given the context 'Moreover, the increased rate of adaptive Leu(+) revertants produced by a MutSL knockout strain was significantly diminished following mutY disruption.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each ... | <Mentions>: [mutsl knockout strain]
<Options>: A: salmonella virus mutine (aka kuttervirus mutine)
B: mute swan feces associated toti-like virus 1
C: fungal endophyte mut 891
D: semen metagenome
E: silvanus muticus
F: None of the above. | [F] |
<Instruct>: Given the context 'In conclusion, our results support the idea that MMR regulation of the mutagenic/antimutagenic properties of MutY promotes stationary-phase mutagenesis in B. subtilis cells.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the select... | <Mentions>: [b. subtilis]
<Options>: A: bacillus mesentericus (aka bacillus subtilis)
B: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
C: bacillus (aka bacillus <walking sticks>)
D: sporobolus subtilis
E: bacillus mesentericus (aka bacillus pumilus)
F: ... | [A] |
<Instruct>: Given the context 'Mapping interactions between germinants and Clostridium difficile spores.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [clostridium difficile]
<Options>: A: clostridium intestinalis (aka clostridium intestinale)
B: clostridium septicum (bacillus septicus) (aka clostridium septicum)
C: ditrichum difficile (trichostomum difficile) (aka ditrichum difficile)
D: peptoclostridium difficile (aka clostridioides difficile)
E: exapio... | [D] |
<Instruct>: Given the context 'Germination of Clostridium difficile spores is the first required step in establishing C. difficile-associated disease (CDAD).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by se... | <Mentions>: [clostridium difficile; c. difficile]
<Options>: A: polytoma difficile
B: cosmarium difficile
C: clostridium thermarum
D: eubacterium difficile
E: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
F: clostridium rectalis... | [E; E] |
<Instruct>: Given the context 'Germination of Clostridium difficile spores is the first required step in establishing C. difficile-associated disease (CDAD).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by se... | <Mentions>: [clostridium difficile; c. difficile]
<Options>: A: bacillus septicus (aka clostridium septicum)
B: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
C: exapion difficile (apion difficile) (aka exapion difficile)
D: cosm... | [B; B] |
<Instruct>: Given the context 'Taurocholate (a bile salt) and glycine (an amino acid) have been shown to be important germinants of C. difficile spores.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicol... | <Mentions>: [c. difficile]
<Options>: A: bacterium diphtheriae (aka corynebacterium diphtheriae)
B: peptoclostridium difficile (aka clostridioides difficile)
C: flavobacterium difficile
D: clostridium difficile m68 (aka clostridioides difficile m68)
E: clostridium thermarum
F: None of the above. | [B] |
<Instruct>: Given the context 'In the present study, we tested a series of glycine and taurocholate analogs for the ability to induce or inhibit C. difficile spore germination.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each menti... | <Mentions>: [c. difficile]
<Options>: A: clostridium difficile b-1 (aka clostridioides difficile b-1)
B: apion difficile (aka exapion difficile)
C: peptoclostridium difficile (aka clostridioides difficile)
D: clostridium difficile t61 (aka clostridioides difficile t61)
E: trichostomum difficile (aka ditrichum difficile... | [C] |
<Instruct>: Given the context 'The C. difficile germination machinery also recognizes other hydrophobic amino acids.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: flavobacterium difficile
B: bacterium diphtheriae (aka corynebacterium diphtheriae)
C: clostridium difficile b-1 (aka clostridioides difficile b-1)
D: eubacterium difficile
E: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 198... | [E] |
<Instruct>: Given the context 'In contrast, the 6- and 7-hydroxyl groups are required for inhibition of C. difficile spore germination.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: clostridium difficile b-1 (aka clostridioides difficile b-1)
B: clostridium thermarum
C: clostridium difficile m68 (aka clostridioides difficile m68)
D: eubacterium difficile
E: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1... | [E] |
<Instruct>: Given the context 'Similarly, C. difficile spores are able to detect taurocholate analogs with shorter, but not longer, alkyl amino sulfonic acid side chains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, se... | <Mentions>: [c. difficile]
<Options>: A: clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (aka clostridioides difficile)
B: apion difficile (aka exapion difficile)
C: clostridium difficile strain b-1 (aka clostridioides difficile b-1)
D: eubacterium difficile
E: clostridium difficile t61 ... | [A] |
<Instruct>: Given the context 'Finally, a taurocholate analog with an m-aminobenzenesulfonic acid side chain is a strong inhibitor of C. difficile spore germination.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separat... | <Mentions>: [c. difficile]
<Options>: A: clostridium difficile m68 (aka clostridioides difficile m68)
B: trichostomum difficile (aka ditrichum difficile)
C: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
D: flavobacterium diffici... | [C] |
<Instruct>: Given the context 'In conclusion, C. difficile spores recognize both amino acids and taurocholate through multiple interactions that are required to bind the germinants and/or activate the germination machinery.
', select the correct biomedical concept for each mention using the provided options. Answer by... | <Mentions>: [c. difficile]
<Options>: A: bacterium diphtheriae (aka corynebacterium diphtheriae)
B: clostridium thermarum
C: exapion difficile (apion difficile) (aka exapion difficile)
D: bacillus septicus (aka clostridium septicum)
E: peptoclostridium difficile (aka clostridioides difficile)
F: None of the above. | [E] |
<Instruct>: Given the context 'In conclusion, C. difficile spores recognize both amino acids and taurocholate through multiple interactions that are required to bind the germinants and/or activate the germination machinery.
', select the correct biomedical concept for each mention using the provided options. Answer by... | <Mentions>: [c. difficile]
<Options>: A: bacterium diphtheriae (aka corynebacterium diphtheriae)
B: bacillus septicus (aka clostridium septicum)
C: exapion difficile (apion difficile) (aka exapion difficile)
D: clostridium thermarum
E: None of the above. | [E] |
<Instruct>: Given the context 'In vitro studies of peptidoglycan binding and hydrolysis by the Bacillus anthracis germination-specific lytic enzyme SleB.
The Bacillus anthracis endospore loses resistance properties during germination when its cortex peptidoglycan is degraded by germination-specific lytic enzymes (GSL... | <Mentions>: [bacillus anthracis]
<Options>: A: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
B: bacillus cereus biovar anthracis
C: bacillus aerophilus
D: anthrax
E: anthrax (aka bacillus anthracis)
F: None of the above. | [E] |
<Instruct>: Given the context 'As the conditions and limitations for SleB activity are further elucidated, they will enable the development of treatments that stimulate premature germination of B. anthracis spores, greatly simplifying decontamination measures.
', select the correct biomedical concept for each mention ... | <Mentions>: [b. anthracis]
<Options>: A: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
B: bacillus cereus var. anthracis (aka bacillus anthracis)
C: bacillus cytotoxicus (bacillus cytotoxis) (aka bacillus cytotoxicus)
D: anthrax
E: bacillus necrophorus (aka fusobacterium necro... | [B] |
<Instruct>: Given the context 'Glucose-dependent activation of Bacillus anthracis toxin gene expression and virulence requires the carbon catabolite protein CcpA.
Sensing environmental conditions is an essential aspect of bacterial physiology and virulence.', select the correct biomedical concept for each mention usi... | <Mentions>: [bacillus anthracis]
<Options>: A: bacillus cereus biovar anthracis
B: anthrax bacterium (aka bacillus anthracis)
C: anthrax anthrax (musca anthrax) (aka anthrax anthrax)
D: pestisella pestis (aka yersinia pestis)
E: bacillus bronchicanis (aka bordetella bronchiseptica)
F: None of the above. | [B] |
<Instruct>: Given the context 'In Bacillus anthracis, the causative agent of anthrax, transcription of the two major virulence factors, toxin and capsule, is triggered by bicarbonate, a major compound in the mammalian body.', select the correct biomedical concept for each mention using the provided options. Answer by l... | <Mentions>: [bacillus anthracis; anthrax]
<Options>: A: anthrax anthrax (musca anthrax) (aka anthrax anthrax)
B: bacillus bronchisepticus (aka bordetella bronchiseptica)
C: anthribus nebulosus (brachytarsus nebulosus) (aka anthribus nebulosus)
D: bacillus cereus var. anthracis (aka bacillus anthracis)
E: pasteurella pe... | [D; D] |
<Instruct>: Given the context 'In Bacillus anthracis, the causative agent of anthrax, transcription of the two major virulence factors, toxin and capsule, is triggered by bicarbonate, a major compound in the mammalian body.', select the correct biomedical concept for each mention using the provided options. Answer by l... | <Mentions>: [bacillus anthracis; anthrax]
<Options>: A: bacillus cereus var. anthracis (aka bacillus anthracis)
B: anthribus nebulosus (brachytarsus nebulosus) (aka anthribus nebulosus)
C: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
D: musca anthrax (... | [A; A] |
<Instruct>: Given the context 'Here it is shown that glucose is an additional signaling molecule recognized by B. anthracis for toxin synthesis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. anthracis]
<Options>: A: anthrax (aka bacillus anthracis)
B: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
C: bacillus necrophorus (aka fusobacterium necrophorum)
D: pestisella pestis (aka yersinia pestis)
E: anthrax anthrax (musca anthrax) (a... | [A] |
<Instruct>: Given the context 'The virulence of a B. anthracis strain from which the ccpA gene was deleted was significantly attenuated in a mouse model of infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separa... | <Mentions>: [b. anthracis strain; mouse]
<Options>: A: mus terricolor (earth-colored mouse) (aka mus terricolor)
B: bacillus pestis (aka yersinia pestis)
C: western wild mouse (aka mus spretus)
D: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
E: bacillus anthracis a16 (aka bacillus an... | [G; J] |
<Instruct>: Given the context 'The virulence of a B. anthracis strain from which the ccpA gene was deleted was significantly attenuated in a mouse model of infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separa... | <Mentions>: [b. anthracis strain; mouse]
<Options>: A: western wild mouse (aka mus spretus)
B: bacillus anthracis a16 (aka bacillus anthracis str. a16)
C: bacillus anthracis westernna (aka bacillus anthracis str. western north america usa6153)
D: mouse (aka mus <genus>)
E: mus terricolor (earth-colored mouse) (aka mus ... | [I; J] |
<Instruct>: Given the context 'The virulence of a B. anthracis strain from which the ccpA gene was deleted was significantly attenuated in a mouse model of infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separa... | <Mentions>: [b. anthracis strain; mouse]
<Options>: A: bacillus anthracis (bacillus cereus var. anthracis) (aka bacillus anthracis)
B: southeastern asian house mouse (aka mus musculus castaneus)
C: bacillus anthracis strain a2012 (aka bacillus anthracis str. a2012)
D: bacillus cereus (bacillus cereus frankland and fran... | [A; E] |
<Instruct>: Given the context 'The data demonstrated that glucose is an important host environment-derived signaling molecule and that CcpA is a molecular link between environmental sensing and B. anthracis pathogenesis.
', select the correct biomedical concept for each mention using the provided options. Answer by li... | <Mentions>: [b. anthracis]
<Options>: A: bacteridium anthracis (aka bacillus anthracis)
B: anthrax anthrax (musca anthrax) (aka anthrax anthrax)
C: anthrax
D: bacterium pestis (aka yersinia pestis)
E: bacillus cytotoxis (aka bacillus cytotoxicus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Structural and functional analysis of the type III secretion system from Pseudomonas fluorescens Q8r1-96.
Pseudomonas fluorescens Q8r1-96 represents a group of rhizosphere strains responsible for the suppressiveness of agricultural soils to take-all disease of wheat.', select the correc... | <Mentions>: [pseudomonas fluorescens q8r1-96]
<Options>: A: pseudomonas fluorescens bv. f
B: pseudomonas fluorescens pcai_d6.2
C: pseudomonas fluorescens (bacillus fluorescens liquefaciens) (aka pseudomonas fluorescens)
D: pseudomonas fluorescens nbrc 14160
E: pseudomonas quebecensis
F: None of the above. | [C] |
<Instruct>: Given the context 'In this study, we analyzed the genome of Q8r1-96 and identified a type III protein secretion system (T3SS) gene cluster that has overall organization similar to that of the T3SS gene cluster of the plant pathogen Pseudomonas syringae.', select the correct biomedical concept for each menti... | <Mentions>: [q8r1-96; pseudomonas syringae]
<Options>: A: cloning vector ia1_yqr
B: pseudomonas herbicola (aka pantoea agglomerans)
C: pseudomonas syringae subsp. syringae (aka pseudomonas syringae)
D: pseudomonas syringae icmp 19498
E: pseudomonas paralactis
F: cloning vector ia(9)_hqn_ra(1)_hqn
G: pseudomonas syringa... | [K; C] |
<Instruct>: Given the context 'In this study, we analyzed the genome of Q8r1-96 and identified a type III protein secretion system (T3SS) gene cluster that has overall organization similar to that of the T3SS gene cluster of the plant pathogen Pseudomonas syringae.', select the correct biomedical concept for each menti... | <Mentions>: [q8r1-96; pseudomonas syringae]
<Options>: A: cloning vector ia1_yqr_dimer
B: pseudomonas syringae kn2.a.3
C: cloning vector ia1_gkr
D: pseudomonas syringae tomato (aka pseudomonas syringae pv. tomato)
E: cloning vector ia(5)_hqn_fa(2)_ksl
F: pseudomonas syringae (pseudomonas syringae subsp. syringae) (aka ... | [K; F] |
<Instruct>: Given the context 'We also screened a collection of 30 closely related P. fluorescens strains and detected the T3SS genes in all but one of them.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by se... | <Mentions>: [p. fluorescens strains]
<Options>: A: pseudomonas fluorescens group sp.
B: pseudomonas protegens
C: pseudomonas ovalis (aka pseudomonas putida)
D: pseudomonas fluorescens (bacillus fluorescens liquefaciens) (aka pseudomonas fluorescens)
E: pseudomonas [fluorescens] atcc 17400
F: None of the above. | [D] |
<Instruct>: Given the context 'The Q8r1-96 genome contained ropAA and ropM type III effector genes, which are orthologs of the P. syringae effector genes hopAA1-1 and hopM1, as well as a novel type III effector gene designated ropB. These type III effector genes encoded proteins that were secreted in culture and inject... | <Mentions>: [q8r1-96; p. syringae]
<Options>: A: pseudomonas paralactis
B: pseudomonas syringae kn2.a.3
C: cloning vector ia5_yqr_dimer
D: cloning vector ia1_yqr
E: cloning vector ra(1)_hqn
F: pseudomonas syringae (pseudomonas syringae subsp. syringae) (aka pseudomonas syringae)
G: cloning vector ia(5)_hqn_fa(2)_ksl
H:... | [K; F] |
<Instruct>: Given the context 'The Q8r1-96 genome contained ropAA and ropM type III effector genes, which are orthologs of the P. syringae effector genes hopAA1-1 and hopM1, as well as a novel type III effector gene designated ropB. These type III effector genes encoded proteins that were secreted in culture and inject... | <Mentions>: [q8r1-96; p. syringae]
<Options>: A: phytophthora syringae (phloeophthora syringae) (aka phytophthora syringae)
B: cloning vector ra(2)_hqn
C: halobacteriales archaeon qh_1_68_42
D: bacillus pyocyaneus (aka pseudomonas aeruginosa)
E: pseudomonas syringae lmc.p80
F: cloning vector ia1_yqr_dimer
G: pseudomona... | [K; G] |
<Instruct>: Given the context 'The Q8r1-96 T3SS was expressed in the rhizosphere, but mutants lacking a functional T3SS were not altered in their rhizosphere competence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, sep... | <Mentions>: [q8r1-96]
<Options>: A: cloning vector ra(1)_hqn
B: cloning vector ia1_ksl
C: cloning vector ia5_yqr_dimer
D: cloning vector ia1_yqr_dimer
E: cloning vector ia(10)_yqr
F: None of the above. | [F] |
<Instruct>: Given the context 'The Q8r1-96 type III effectors RopAA, RopB, and RopM were capable of suppressing the hypersensitive response and production of reactive oxygen species, two plant immune responses.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the ... | <Mentions>: [q8r1-96]
<Options>: A: cloning vector ia(9)_hqn_ra(1)_hqn
B: cloning vector ia(11)_yqr
C: cloning vector ia1_yqr
D: cloning vector ia(5)_hqn_fa(2)_ksl
E: cloning vector ia1_yqr_dimer
F: None of the above. | [F] |
<Instruct>: Given the context 'A cis-encoded antisense small RNA regulated by the HP0165-HP0166 two-component system controls expression of ureB in Helicobacter pylori.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, s... | <Mentions>: [helicobacter pylori]
<Options>: A: helicobacter suis (candidatus helicobacter suis) (aka helicobacter suis)
B: helicobacter
C: helicobacter cholecystus
D: campylobacter pyloridis (aka helicobacter pylori)
E: helicobacter bilis
F: None of the above. | [D] |
<Instruct>: Given the context 'Expression of urease is essential for gastric colonization by Helicobacter pylori.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [helicobacter pylori]
<Options>: A: helicobacter
B: helicobacter felis
C: campylobacter pylori (aka helicobacter pylori)
D: candidatus helicobacter suis (aka helicobacter suis)
E: helicobacter muridarum
F: None of the above. | [C] |
<Instruct>: Given the context 'C-terminal domain residues important for secretion and attachment of RgpB in Porphyromonas gingivalis.
Porphyromonas gingivalis, a periodontal pathogen, expresses a group of surface proteins with a common C-terminal domain (CTD) that are exported by a novel secretion system to the surfa... | <Mentions>: [porphyromonas gingivalis]
<Options>: A: porphyromonas gingivalis sjd12
B: porphyromonas pasteri
C: capnocytophaga gingivalis
D: porphyromonas gingivalis (bacteroides gingivalis) (aka porphyromonas gingivalis)
E: porphyromonas vaginalis
F: None of the above. | [D] |
<Instruct>: Given the context 'The mutant RgpB proteins were expressed in a P. gingivalis host lacking functional RgpB and RgpA Arg-specific proteases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolo... | <Mentions>: [p. gingivalis]
<Options>: A: pasteurella
B: porphyromonas gingivalis (bacteroides gingivalis) (aka porphyromonas gingivalis)
C: porphyromonas gingivalis sjd5
D: pasteuria
E: porphyromonas gingivalis sjd11
F: None of the above. | [B] |
<Instruct>: Given the context 'Effects of deficiency and overdose of group 2 sigma factors in triple inactivation strains of Synechocystis sp. strain PCC 6803.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated ... | <Mentions>: [synechocystis sp. strain pcc 6803]
<Options>: A: synechocystis sp. s-1
B: synechocystis sp. pcc 6906 (synechocystis sp. atcc 27266) (aka synechocystis sp. pcc 6906)
C: synechocystis sp. (atcc 27184) (aka synechocystis sp. pcc 6803)
D: synechocystis sp. atcc 27186 (aka synechocystis sp. pcc 6805)
E: synecho... | [C] |
<Instruct>: Given the context 'Effects of deficiency and overdose of group 2 sigma factors in triple inactivation strains of Synechocystis sp. strain PCC 6803.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated ... | <Mentions>: [synechocystis sp. strain pcc 6803]
<Options>: A: synechocystis sp. pcc 6702 (synechocystis sp. atcc 27171) (aka synechocystis sp. pcc 6702)
B: synechocystis sp. pcc 6906 (synechocystis sp. atcc 27266) (aka synechocystis sp. pcc 6906)
C: synechocystis sp. s-1
D: synechocystis sp. atcc 27186 (aka synechocyst... | [E] |
<Instruct>: Given the context 'The cyanobacterium Synechocystis sp. strain PCC 6803 encodes nine sigma factors, all belonging to the sigma(70) family.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon... | <Mentions>: [synechocystis sp. strain pcc 6803]
<Options>: A: synechococcus sp. ps673
B: synechocystis sp.
C: synechocystis sp. s-1
D: synechocystis sp. atcc 27186 (aka synechocystis sp. pcc 6805)
E: synechocystis sp. (atcc 27184) (aka synechocystis sp. pcc 6803)
F: None of the above. | [E] |
<Instruct>: Given the context 'We found that, similar to kinetoplastid aldolases, the fructose 1,6-bisphosphate aldolase of Diplonema papillatum possesses a type 2-peroxisomal targeting signal.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, o... | <Mentions>: [diplonema papillatum]
<Options>: A: phragmidium papillatum
B: enerthenema papillatum
C: faramea papillata
D: gymnomitrion papillosum
E: polytrichastrum papillatum
F: None of the above. | [F] |
<Instruct>: Given the context 'In contrast, orotidine-5'-monophosphate decarboxylase, a non-glycolytic glycosomal enzyme in kinetoplastids, was shown to be a cytosolic enzyme in D. papillatum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, on... | <Mentions>: [d. papillatum]
<Options>: A: faramea papillata
B: drosanthemum papillatum
C: seiridium papillatum
D: phragmidium papillatum
E: fusarium papillatum (neocosmospora papillata) (aka fusarium papillatum)
F: None of the above. | [F] |
<Instruct>: Given the context 'P. penardii and P. niei sampled from various geographical localities were examined by means of light and scanning electron microscopy.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separat... | <Mentions>: [p. penardii; p. niei]
<Options>: A: pneumocystis jirovecii
B: unruhdinium niei (peridiniopsis niei) (aka unruhdinium niei)
C: babesia peircei
D: penaincisalia penai
E: phocoenobacter uteri (pasteurella phocoenarum) (aka phocoenobacter uteri)
F: phaenomenella nicoi
G: buchnera aphidicola (nippolachnus piri)... | [H; B] |
<Instruct>: Given the context 'P. penardii and P. niei sampled from various geographical localities were examined by means of light and scanning electron microscopy.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separat... | <Mentions>: [p. penardii; p. niei]
<Options>: A: penapis penai
B: parasericostoma peniai
C: peridiniopsis niei (aka unruhdinium niei)
D: plasmopara penniseti
E: penidiella
F: phaenomenella nicoi
G: nyungwea pyneei
H: plesiozela nielseni
I: unruhdinium penardii (peridiniopsis penardii) (aka unruhdinium penardii)
J: phan... | [I; C] |
<Instruct>: Given the context 'Molecular phylogenetic analyses based on SSU, LSU and ITS indicated P. niei, P. penardii and P. penardii var.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. niei]
<Options>: A: phanaeus nimrod
B: unruhdinium niei (peridiniopsis niei) (aka unruhdinium niei)
C: proepeorus nipponicus (epeorus nipponicus) (aka proepeorus nipponicus)
D: pasteuria nishizawae
E: phaenomenella nicoi
F: None of the above. | [B] |
<Instruct>: Given the context 'The new variety possessed an endosymbiotic diatom which was similar to P. penardii and P. kevei, whereas the endosymbiont was not present in cells of P. niei.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one f... | <Mentions>: [p. niei]
<Options>: A: plesiozela nielseni
B: pasteuria nishizawae
C: nyungwea pyneei
D: peridiniopsis niei (aka unruhdinium niei)
E: babesia peircei
F: None of the above. | [D] |
<Instruct>: Given the context 'Effects of temperature on the development and population growth of the sycamore lace bug, Corythucha ciliata.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sycamore lace bug; corythucha ciliata]
<Options>: A: cicadula ciliata
B: cybaeus monticola
C: callosa ciliata
D: caulibugula ciliata
E: tea seed bug (aka poecilocoris latus)
F: tamarind pod-borer (aka sitophilus linearis)
G: commiphora ciliata
H: syrnolopsis lacustris
I: sycamore lace bug (aka corythucha c... | [I; I] |
<Instruct>: Given the context 'Effects of temperature on the development and population growth of the sycamore lace bug, Corythucha ciliata.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sycamore lace bug; corythucha ciliata]
<Options>: A: chaetanthera ciliata
B: isachne muscicola
C: sycamore seed bug (aka belonochilus numenius)
D: lophozia ciliata
E: philotheca ciliata
F: bulbothrix lacinia
G: cybaeus monticola
H: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
I: sycamore lace bu... | [I; I] |
<Instruct>: Given the context 'The sycamore lace bug, Corythucha ciliata (Say) (Hemiptera: Tingidae), is an important invasive exotic pest of Platanus (Proteales: Platanaceae) trees in China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one... | <Mentions>: [sycamore lace bug; corythucha ciliata]
<Options>: A: shiny bluebottle fly (aka cynomya cadaverina)
B: western sycamore (aka platanus racemosa)
C: xylocopa ciliata
D: sycamore lace bug (aka corythucha ciliata)
E: sycamore seed bug (aka belonochilus numenius)
F: callosa ciliata
G: commiphora ciliata
H: solit... | [D; D] |
<Instruct>: Given the context 'The sycamore lace bug, Corythucha ciliata (Say) (Hemiptera: Tingidae), is an important invasive exotic pest of Platanus (Proteales: Platanaceae) trees in China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one... | <Mentions>: [sycamore lace bug; corythucha ciliata]
<Options>: A: plectronia ciliata (aka canthium ciliatum)
B: philotheca ciliata
C: tea seed bug (aka poecilocoris latus)
D: chrysocoma ciliata
E: aphidius sonchi
F: lantana lace bug (aka teleonemia scrupulosa)
G: sycamore lace bug (aka corythucha ciliata)
H: aciculites... | [G; G] |
<Instruct>: Given the context 'The objective of this study was to determine the effects of temperature on C. ciliata in the laboratory so that forecasting models based on heat accumulation units could be developed for the pest.', select the correct biomedical concept for each mention using the provided options. Answer ... | <Mentions>: [c. ciliata]
<Options>: A: crassula ciliata
B: chaetosphaeria ciliata
C: tetratheca ciliata
D: commiphora ciliata
E: corythuca ciliata (aka corythucha ciliata)
F: None of the above. | [E] |
<Instruct>: Given the context 'Development and fecundity of C. ciliata reared on leaves of London plane tree (Platanus x acerifolia) were investigated at seven constant temperatures (16, 19, 22, 26, 30, 33, and 36^0 C) and at a relative humidity of 80% with a photoperiod of 14:10 (L:D).', select the correct biomedical ... | <Mentions>: [c. ciliata; london plane tree; platanus x acerifolia]
<Options>: A: cryptocoryne ciliata
B: carpinus londoniana
C: chaetanthera ciliata
D: london plane tree (aka platanus x hispanica)
E: phyllanthus spruceanus
F: phyllanthus comosus
G: roldana platanifolia
H: coenosia ciliata
I: ranunculus platanifolius
J:... | [L; D; D] |
<Instruct>: Given the context 'Development and fecundity of C. ciliata reared on leaves of London plane tree (Platanus x acerifolia) were investigated at seven constant temperatures (16, 19, 22, 26, 30, 33, and 36^0 C) and at a relative humidity of 80% with a photoperiod of 14:10 (L:D).', select the correct biomedical ... | <Mentions>: [c. ciliata; london plane tree; platanus x acerifolia]
<Options>: A: platiana
B: london plane tree (aka platanus x hispanica)
C: styrax platanifolius
D: cryptandra ciliata
E: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
F: erica platycalyx
G: campanula ciliata
H: phyllobates sylvatica (aka hyloxa... | [I; B; B] |
<Instruct>: Given the context 'Development and fecundity of C. ciliata reared on leaves of London plane tree (Platanus x acerifolia) were investigated at seven constant temperatures (16, 19, 22, 26, 30, 33, and 36^0 C) and at a relative humidity of 80% with a photoperiod of 14:10 (L:D).', select the correct biomedical ... | <Mentions>: [c. ciliata; london plane tree; platanus x acerifolia]
<Options>: A: phyllanthus multiflorus (aka kirganelia reticulata)
B: phyllanthus taitensis
C: phyllanthus spruceanus
D: phacus platalea
E: corythucha ciliata (corythuca ciliata) (aka corythucha ciliata)
F: chaetanthera ciliata
G: chrysocoma ciliata
H: r... | [E; I; I] |
<Instruct>: Given the context 'The developmental time from egg hatching to adult emergence was respectively 47.6, 35.0, 24.1, 20.0, and 17.1 days at the temperatures of 19, 22, 26, 30, and 33^0 C. C. ciliata could not complete full development at 16^0 and 36^0 C.', select the correct biomedical concept for each mention... | <Mentions>: [c. ciliata]
<Options>: A: chaetanthera ciliata
B: cryptandra ciliata
C: corythuca ciliata (aka corythucha ciliata)
D: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
E: cladonia ciliata
F: None of the above. | [C] |
<Instruct>: Given the context 'The population trend index (I) of C. ciliata was the highest (130.1) at 30^0 C and the lowest (24.9) at 19^0 C. Therefore, the optimal developmental temperature for C. ciliata was determined to be 30^0 C.
', select the correct biomedical concept for each mention using the provided option... | <Mentions>: [c. ciliata]
<Options>: A: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
B: caulibugula ciliata
C: corythucha ciliata (corythuca ciliata) (aka corythucha ciliata)
D: chaetanthera ciliata
E: chaetosphaeria ciliata
F: None of the above. | [C] |
<Instruct>: Given the context 'Plant infestation, stem borer density, parasitism, and parasitoid abundance were assessed during two years in two host plants, Zea mays (L.) (Cyperales: Poaceae) and Sorghum bicolor (L.) (Cyperales: Poaceae), in cultivated habitats.', select the correct biomedical concept for each mention... | <Mentions>: [zea mays (l.); sorghum bicolor (l.)]
<Options>: A: zea mays var. japonica (aka zea mays)
B: sorghum grande
C: broomcorn (aka sorghum bicolor)
D: nupserha bicolor (stibara bicolor) (aka nupserha bicolor)
E: zea mexicana (aka zea mays subsp. mexicana)
F: teosinte (aka zea perennis)
G: zelus grassans
H: solan... | [A; C] |
<Instruct>: Given the context 'Plant infestation, stem borer density, parasitism, and parasitoid abundance were assessed during two years in two host plants, Zea mays (L.) (Cyperales: Poaceae) and Sorghum bicolor (L.) (Cyperales: Poaceae), in cultivated habitats.', select the correct biomedical concept for each mention... | <Mentions>: [zea mays (l.); sorghum bicolor (l.)]
<Options>: A: zelus grassans
B: sorghum angustum
C: nupserha bicolor (stibara bicolor) (aka nupserha bicolor)
D: solanum bicolor
E: zelurus petax
F: zela zeus
G: fumaria bicolor
H: sorghum vulgare (aka sorghum bicolor)
I: maize (aka zea mays)
J: zethus
K: None of the ab... | [I; H] |
<Instruct>: Given the context 'Across habitats, plant infestation (23.2%), stem borer density (2.2 per plant), and larval parasitism (15.0%) were highest in maize in cultivated habitats.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for ... | <Mentions>: [maize]
<Options>: A: maize (aka zea mays)
B: zelus grassans
C: heliothis zea (aka helicoverpa zea)
D: agromyces ramosum (aka agromyces ramosus)
E: corn smut (aka mycosarcoma maydis)
F: None of the above. | [A] |
<Instruct>: Given the context 'Cotesia sesamiae (Cameron) and C. flavipes Cameron (Hymenoptera: Braconidae) were the key parasitoids in cultivated habitats (both species accounted for 76.4% of parasitized stem borers in cereal crops), but not in natural habitats (the two Cotesia species accounted for 14.5% of parasitiz... | <Mentions>: [cotesia sesamiae (cameron); c. flavipes cameron]
<Options>: A: descampsina sesamiae
B: cotesia flavipes
C: chionea crassipes
D: ochthebius flavipes
E: macrosporium sesami (aka alternaria sesami)
F: ipomoea sescossiana
G: sesamia congoensis
H: cryptocephalus flavipes
I: apanteles sesamiae (aka cotesia sesam... | [I; B] |
<Instruct>: Given the context 'Cotesia sesamiae (Cameron) and C. flavipes Cameron (Hymenoptera: Braconidae) were the key parasitoids in cultivated habitats (both species accounted for 76.4% of parasitized stem borers in cereal crops), but not in natural habitats (the two Cotesia species accounted for 14.5% of parasitiz... | <Mentions>: [cotesia sesamiae (cameron); c. flavipes cameron]
<Options>: A: sessilanthera citrina
B: pherocera flavipes
C: cotesia flavipes
D: cotesia sesamiae (apanteles sesamiae) (aka cotesia sesamiae)
E: clavaria flavipes
F: coryne sessilis (aka zanclea sessilis)
G: sesamia congoensis
H: chorebus flavipes
I: pantoea... | [D; C] |
<Instruct>: Given the context 'Factors of susceptibility of human myiasis caused by the New World screw-worm, Cochliomyia hominivorax in Sao Gonsigmaalo, Rio de Janeiro, Brazil.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each m... | <Mentions>: [human; new world screw-worm; cochliomyia hominivorax]
<Options>: A: clitocybula grisella (fayodia grisella) (aka clitocybula grisella)
B: corydoras gossei (aka hoplisoma gossei)
C: great apes (aka hominidae)
D: homo sapiens (human) (aka homo sapiens)
E: hominiventricola filiformis
F: sphaeria humana (aka s... | [D; I; I] |
<Instruct>: Given the context 'Factors of susceptibility of human myiasis caused by the New World screw-worm, Cochliomyia hominivorax in Sao Gonsigmaalo, Rio de Janeiro, Brazil.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each m... | <Mentions>: [human; new world screw-worm; cochliomyia hominivorax]
<Options>: A: macrobiotus sapiens
B: southern armyworm (aka spodoptera eridania)
C: humans (aka homo)
D: red-striped needleworm (aka epinotia radicana)
E: old world screwworm fly (aka chrysomya bezziana)
F: lindgomyces carolinensis
G: xenorhabdus homini... | [K; M; M] |
<Instruct>: Given the context 'Factors of susceptibility of human myiasis caused by the New World screw-worm, Cochliomyia hominivorax in Sao Gonsigmaalo, Rio de Janeiro, Brazil.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each m... | <Mentions>: [human; new world screw-worm; cochliomyia hominivorax]
<Options>: A: neanderthal man (aka homo sapiens neanderthalensis)
B: hargeria rapax (leptochelia rapax) (aka hargeria rapax)
C: lindgomyces carolinensis
D: primary screw-worm (aka cochliomyia hominivorax)
E: slow worm (aka anguis fragilis)
F: pediculus ... | [N; D; D] |
<Instruct>: Given the context 'This study was carried out between July 2007 and June 2008 and reports on the occurrence of human myiasis caused by the New World screwworm, Cochliomyia hominivorax (Coquerel) (Diptera: Calliphoridae) in Sao Gonsigmaalo in the state of Rio de Janeiro, Brazil.', select the correct biomedic... | <Mentions>: [human; cochliomyia hominivorax]
<Options>: A: cardium humanum (aka glossus humanus)
B: human louse (aka pediculus humanus)
C: hermaeophaga cicatrix (haltica cicatrix) (aka hermaeophaga cicatrix)
D: hymenobacter terricola
E: cochliomyia hominivorax (primary screw-worm) (aka cochliomyia hominivorax)
F: cochl... | [I; E] |
<Instruct>: Given the context 'This study was carried out between July 2007 and June 2008 and reports on the occurrence of human myiasis caused by the New World screwworm, Cochliomyia hominivorax (Coquerel) (Diptera: Calliphoridae) in Sao Gonsigmaalo in the state of Rio de Janeiro, Brazil.', select the correct biomedic... | <Mentions>: [human; cochliomyia hominivorax]
<Options>: A: tamarix gallica
B: carcharhinus humani
C: sphaeria humana (aka sordaria humana)
D: homo sapiens (human) (aka homo sapiens)
E: cochliobolus heterostrophus (aka bipolaris maydis)
F: hermaeophaga cicatrix (haltica cicatrix) (aka hermaeophaga cicatrix)
G: heteromal... | [D; H] |
<Instruct>: Given the context 'C. hominivorax were identified in all 22 cases of myiasis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. hominivorax]
<Options>: A: chilothorax
B: xenorhabdus hominickii
C: campylobacter avium
D: cochliomyia hominivorax (primary screw-worm) (aka cochliomyia hominivorax)
E: criconemella xenoplax (aka mesocriconema xenoplax)
F: None of the above. | [D] |
<Instruct>: Given the context 'This study investigated the suitability of a two step real-time RT-PCR melting curve analysis as a tool for the detection and discrimination of nine species in the plant virus family Luteoviridae, being Soybean dwarf virus', select the correct biomedical concept for each mention using the... | <Mentions>: [soybean dwarf virus]
<Options>: A: maize streak dwarfing virus
B: soybean vein necrosis virus
C: rice dwarf virus rdv (aka rice dwarf virus)
D: soybean dwarf virus
E: rice gall dwarf virus (rgdv (aka rice gall dwarf virus))
F: None of the above. | [D] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sbdv; bean leafroll virus; blrv; beet chlorosis virus]
<Options>: A: bruthen virus
B: beet leaf yellowing virus
C: salmon pancreas disease virus (spdv (aka salmon pancreas disease virus))
D: cotton leafroll virus (cotton leaf roll virus) (aka cotton leafroll virus)
E: brassica yellows virus
F: beet chloros... | [T; N; N; F] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sbdv; bean leafroll virus; blrv; beet chlorosis virus]
<Options>: A: bequatrovirus troll (bacillus virus troll) (aka bequatrovirus troll)
B: cotton leafroll bushy virus
C: sac brood virus (aka sacbrood virus)
D: pepper leafroll virus
E: brassica yellows virus
F: blrv (aka bean leafroll virus) (aka bean lea... | [T; F; F; S] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sbdv; bean leafroll virus; blrv; beet chlorosis virus]
<Options>: A: rbsdv (aka rice black streaked dwarf virus)
B: beet chlorosis virus
C: bean yellow dwarf virus
D: bean chlorosis virus
E: bean leafroll virus (blrv (aka bean leafroll virus))
F: south bay virus
G: bruthen virus
H: sugar beet yellows virus... | [T; E; E; B] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sbdv; bean leafroll virus; blrv; beet chlorosis virus]
<Options>: A: faba bean yellow leaf virus
B: french bean leaf curl virus
C: beet chlorosis virus
D: bltrv-1 (aka betaricinrhavirus scapularis)
E: bovine leukemia virus blv (aka bovine leukemia virus)
F: bvdv-1 (aka bovine viral diarrhea virus 1)
G: bov... | [R; K; K; C] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bchv; beet mild yellowing virus]
<Options>: A: becv (aka bovine coronavirus) (aka bovine coronavirus)
B: bovine circovirus
C: beet yellow stunt virus
D: bubo bubo herpesvirus
E: maize yellow mosaic virus
F: broad bean mottle virus
G: buhv-1 (aka bubaline alphaherpesvirus 1)
H: bovine herpesvirus 1 (aka bov... | [K; J] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bchv; beet mild yellowing virus]
<Options>: A: bubo bubo herpesvirus
B: beet eastern yellows virus
C: bcv (aka bovine coronavirus) (aka bovine coronavirus)
D: broad bean mottle virus
E: butterbur mosaic virus (butmv) (aka butterbur mosaic virus)
F: bmyv (aka beet mild yellowing virus) (aka beet mild yellow... | [K; F] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon... | <Mentions>: [bmyv; beet western yellows virus; bwyv; cereal yellow dwarf virus-rpv]
<Options>: A: cereal yellow dwarf virus-rpv (aka cereal yellow dwarf virus rpv)
B: brome mosaic virus (bmv (aka brome mosaic virus))
C: barley dwarf virus
D: beet yellow stunt virus
E: moriarty virus
F: cereal yellow dwarf virus - rps (... | [K; I; I; A] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon... | <Mentions>: [bmyv; beet western yellows virus; bwyv; cereal yellow dwarf virus-rpv]
<Options>: A: bovine polyomavirus bpyv (aka epsilonpolyomavirus bovis)
B: rice dwarf virus rdv (aka rice dwarf virus)
C: steenbok polyomavirus
D: potyvirus wisteriae
E: mandrill polyomavirus
F: cereal yellow dwarf virus - rps (aka cerea... | [H; K; K; Q] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon... | <Mentions>: [bmyv; beet western yellows virus; bwyv; cereal yellow dwarf virus-rpv]
<Options>: A: barley yellow dwarf virus-rmv
B: mburo virus
C: bk polyomavirus (aka betapolyomavirus hominis)
D: bmyv (aka beet mild yellowing virus) (aka beet mild yellowing virus)
E: beet western yellow virus (aka beet western yellows ... | [D; E; E; N] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon... | <Mentions>: [bmyv; beet western yellows virus; bwyv; cereal yellow dwarf virus-rpv]
<Options>: A: beet mild yellowing virus (bmyv (aka beet mild yellowing virus))
B: beet western yellows virus (bwyv (aka beet western yellows virus))
C: beet western yellows st9 associated virus
D: cereal yellow dwarf virus
E: rice strip... | [S; B; B; K] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon... | <Mentions>: [cydv-rpv; cucurbit aphid-borne yellows virus]
<Options>: A: chrocavyrb virus
B: cydv-rpv (aka cereal yellow dwarf virus rpv)
C: cucurbit aphid-borne yellows virus (cabyv) (aka cucurbit aphid-borne yellows virus)
D: tobacco yellow crinkle virus
E: chrocagyrd virus
F: turnip yellows virus
G: cucumber aphid-b... | [B; C] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon... | <Mentions>: [cydv-rpv; cucurbit aphid-borne yellows virus]
<Options>: A: chrocacyrn virus
B: cucumber aphid-borne yellows virus
C: cabyv (aka cucurbit aphid-borne yellows virus)
D: chrocavyrb virus
E: cpdnv (aka culex pipiens densovirus)
F: cydv-rpv (aka cereal yellow dwarf virus rpv)
G: citrus yellow mottle virus
H: c... | [F; C] |
<Instruct>: Given the context '[CABYV], Potato leafroll virus [PLRV] and Turnip yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cabyv; potato leafroll virus; plrv; turnip yellows virus]
<Options>: A: rabbit picorna-like virus
B: chrocabarb virus
C: pan troglodytes lymphocryptovirus
D: turnip crinkle virus (tcv (aka turnip crinkle virus))
E: bean leafroll virus (blrv (aka bean leafroll virus))
F: pea yellow stunt virus
G: berrek vir... | [J; N; N; I] |
<Instruct>: Given the context '[CABYV], Potato leafroll virus [PLRV] and Turnip yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cabyv; potato leafroll virus; plrv; turnip yellows virus]
<Options>: A: berberis potyvirus
B: plpav (aka peach leaf pitting-associated virus)
C: cotton leaf roll virus (aka cotton leafroll virus)
D: rabbit picorna-like virus
E: potyvirus carotae
F: potato yellow vein virus
G: potato latent virus
H: turnip ... | [R; S; S; K] |
<Instruct>: Given the context '[CABYV], Potato leafroll virus [PLRV] and Turnip yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cabyv; potato leafroll virus; plrv; turnip yellows virus]
<Options>: A: potato yellow vein virus
B: berrek virus
C: turnip yellows virus
D: plrv1 (aka phomosis penoulivirus)
E: tomato infectious yellows virus
F: potato leaf-roll virus (aka potato leafroll virus)
G: pepper leafroll virus
H: cabirus
I: cucur... | [I; F; F; C] |
<Instruct>: Given the context '[CABYV], Potato leafroll virus [PLRV] and Turnip yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cabyv; potato leafroll virus; plrv; turnip yellows virus]
<Options>: A: pepper leafroll chlorosis virus
B: rabbit picorna-like virus
C: turnip curly top virus
D: potato yellowing virus
E: pennypacker partiti-like virus
F: potyvirus cepae
G: berberis potyvirus
H: potato leafroll virus (plrv (aka potato leaf... | [Q; H; H; L] |
<Instruct>: Given the context '[TuYV].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tuyv]
<Options>: A: triplejayvirus
B: tuskovirus
C: trichodysplasia spinulosa-associated polyomavirus (tspyv) (aka trichodysplasia spinulosa-associated polyomavirus)
D: tupaia rhabdovirus (aka tupaia virus)
E: potyvirus
F: None of the above. | [F] |
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