instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
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<Instruct>: Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [alfalfa; sinorhizobium meliloti; sinorhizobium medicae]
<Options>: A: sinorhizobium meliloti m10
B: medicago murex
C: sinorhizobium meliloti kh30a
D: rhizobium meliloti (aka sinorhizobium meliloti)
E: mesorhizobium japonicum
F: sinorhizobium meliloti usda 1021
G: barrel medic (aka medicago truncatula)
H: medicago suffruticosa
I: sinorhizobium arboris (sinorhizobium arboris nick et al. 1999) (aka sinorhizobium arboris)
J: medicago hybrida (trigonella hybrida) (aka medicago hybrida)
K: ensifer medicae (aka sinorhizobium medicae)
L: solanum medicagineum
M: medicago saxatilis
N: None of the above. | [N; D; K] |
<Instruct>: Given the context 'The organization of the cluster showed synteny with those of the alfalfa-nodulating rhizobia, Sinorhizobium meliloti and Sinorhizobium medicae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [alfalfa; sinorhizobium meliloti; sinorhizobium medicae]
<Options>: A: rhizobium meliloti (aka sinorhizobium meliloti)
B: sinorhizobium meliloti kh30a
C: sinorhizobium meliloti m10
D: rhizobium gallicum
E: medicago marina
F: sinorhizobium meliloti kh12g
G: medicago heyniana
H: medicago arborea
I: mesorhizobium japonicum
J: alfalfa (aka medicago sativa)
K: sinorhizobium medicae kh53b
L: medicago italica (medica italica) (aka medicago italica)
M: phytomyxa leguminosarum (aka rhizobium leguminosarum)
N: ensifer medicae (aka sinorhizobium medicae)
O: None of the above. | [J; A; N] |
<Instruct>: Given the context 'Interestingly, the strongest sequence similarity observed was between the partial nod sequences of Rhizobium mongolense USDA 1844 and the corresponding LPU83 nod genes sequences.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizobium mongolense usda 1844; lpu83]
<Options>: A: yeast expression vector pjg483
B: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
C: ulva picorna-like virus 3
D: lon
E: rhizobium kunmingense
F: saccharomyces cerevisiae sgu57
G: rhizobium binae
H: shuttle vector pmtl83151
I: rhizobium miluonense
J: rhizobium sophorae
K: None of the above. | [B; K] |
<Instruct>: Given the context 'Interestingly, the strongest sequence similarity observed was between the partial nod sequences of Rhizobium mongolense USDA 1844 and the corresponding LPU83 nod genes sequences.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhizobium mongolense usda 1844; lpu83]
<Options>: A: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
B: llap 9 (aka legionella-like amoebal pathogen 9)
C: rhizobium lemnae
D: rhizobium mongolense usda 1844 (rhizobium mongolense strain usda 1844) (aka rhizobium mongolense usda 1844)
E: mammalian expression vector psa83
F: rhizobium oryzicola
G: rhizobium terricola
H: lon
I: bacterium lgm83
J: plutonaster
K: None of the above. | [A; K] |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; r. mongolense 1844; rhizobium sp. strain lpu83; alfalfa]
<Options>: A: medicago italica (medica italica) (aka medicago italica)
B: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
C: rhizobium sp. usda 3883
D: medicago lupulina
E: rhabdosargus niger
F: lon
G: bacterium lgm83
H: rhizobium sp. ls-1233
I: medicago sativa subsp. falcata (yellow-flower alfalfa) (aka medicago sativa subsp. falcata)
J: rhabdodendron macrophyllum
K: rhizobium rhododendri
L: rhizobium sp. 8203
M: rhizobium sp. lr77
N: rhipicephalus rutilus
O: alfalfa (aka medicago sativa)
P: shuttle vector pmtl83151
Q: mammalian expression vector psa83
R: medicago truncatula (barrel medic) (aka medicago truncatula)
S: rhizobium sp. lr78
T: yeast expression vector pjg483
U: None of the above. | [U; B; U; O] |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; r. mongolense 1844; rhizobium sp. strain lpu83; alfalfa]
<Options>: A: medica italica (aka medicago italica)
B: rhizobium sp. lr78
C: bacterium lgm83
D: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
E: mammalian expression vector psa83
F: rhodococcus oryzae
G: lucerne (aka medicago sativa)
H: rhizobium sp. usda 3883
I: medicago hypogaea
J: saccharomyces cerevisiae p283
K: rhizobium sp. s93
L: rhizobium oryzicola
M: rhizobium sp. ls-1233
N: medicago heyniana
O: rhodnius domesticus
P: rhizobium sp. p-8
Q: bacterium urfm83
R: rhododrilus
S: legionella-like amoebal pathogen 8 (llap 8) (aka legionella-like amoebal pathogen 8)
T: barrel medic (aka medicago truncatula)
U: None of the above. | [U; D; U; G] |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; r. mongolense 1844; rhizobium sp. strain lpu83; alfalfa]
<Options>: A: rhododendron macrophyllum
B: rhizobium sp. ml83
C: llap 9 (aka legionella-like amoebal pathogen 9)
D: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
E: rhipicephalus rutilus
F: barrel medic (aka medicago truncatula)
G: medicago marina
H: rhizobium sp. an83
I: plasmid pls88
J: medicago (medics) (aka medicago)
K: alfalfa (aka medicago sativa)
L: rhizobium sp. 1003
M: rhipicephalus congolensis
N: fungal clone uuf-68
O: alfalfa caterpillar (aka colias eurytheme)
P: ula
Q: urt cloning vector pkp77
R: rhododendron taliense
S: rhizobium sp. lr77
T: rhizobium sp. hbu08134
U: None of the above. | [U; D; U; K] |
<Instruct>: Given the context 'The phylogenetic analysis of the intergenic region nodEG positions strain LPU83 and the type strain R. mongolense 1844 in the same branch, which indicates that Rhizobium sp. strain LPU83 might represent an early alfalfa-nodulating genotype.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; r. mongolense 1844; rhizobium sp. strain lpu83; alfalfa]
<Options>: A: rhododrilus
B: rhizobium terricola
C: rhizobium sp. p-8
D: verticillium alfalfae
E: rhizobium sp. r46283
F: mammalian expression vector psa83
G: rhizobium mongolense (rhizobium gallicum bv. orientale) (aka rhizobium mongolense)
H: rhododendron taliense
I: medicago marina
J: rhizobium sp. hbu08134
K: bacterium lgm83
L: ula
M: medicago lupulina
N: rhizobium sp. s93
O: alfalfa (aka medicago sativa)
P: plutonaster
Q: rhizobium sp. 1003
R: rhabdosargus niger
S: urt cloning vector pkp77
T: medicago hypogaea
U: None of the above. | [U; G; U; O] |
<Instruct>: Given the context 'Remarkably, while in strain LPU83 most of the NFs were sulfated in their reducing terminal residue, none of the NFs isolated from the nodH mutant LPU83-H were sulfated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; lpu83-h]
<Options>: A: urt cloning vector pkp77
B: mammalian expression vector ppal
C: ulva picorna-like virus 1
D: mammalian expression vector psa83
E: legionella-like amoebal pathogen 8 (llap 8) (aka legionella-like amoebal pathogen 8)
F: hubei partiti-like virus 58
G: shuttle vector pmtl83151
H: fungal clone uuf-68
I: hubei partiti-like virus 48
J: helianthus annuus leaf-associated partitivirus 1
K: None of the above. | [K; K] |
<Instruct>: Given the context 'Remarkably, while in strain LPU83 most of the NFs were sulfated in their reducing terminal residue, none of the NFs isolated from the nodH mutant LPU83-H were sulfated.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; lpu83-h]
<Options>: A: mammalian expression vector ppal
B: yeast expression vector pjg483
C: bacterium urfm83
D: hubei partiti-like virus 48
E: helianthus annuus leaf-associated partitivirus 3
F: firstpapillomavirinae pv-hmu-1
G: ula
H: listeria phage lp-083-1
I: bacterium lgm83
J: llap 9 (aka legionella-like amoebal pathogen 9)
K: None of the above. | [K; K] |
<Instruct>: Given the context 'The evidence obtained supports the notion that the sulfate decoration of NFs in LPU83 is not necessary for alfalfa nodulation.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; alfalfa]
<Options>: A: medica italica (aka medicago italica)
B: bacterium urfm83
C: verticillium alfalfae
D: saccharomyces cerevisiae sgu57
E: medicago arborea
F: fungal clone uuf-68
G: barrel medic (aka medicago truncatula)
H: lon
I: ulva picorna-like virus 1
J: lucerne (aka medicago sativa)
K: None of the above. | [K; J] |
<Instruct>: Given the context 'The evidence obtained supports the notion that the sulfate decoration of NFs in LPU83 is not necessary for alfalfa nodulation.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [lpu83; alfalfa]
<Options>: A: arctic ground squirrel (aka urocitellus parryii)
B: medicago (medics) (aka medicago)
C: llap 9 (aka legionella-like amoebal pathogen 9)
D: medicago hypogaea
E: medicago hybrida (trigonella hybrida) (aka medicago hybrida)
F: saccharomyces cerevisiae sgu57
G: lon
H: alfalfa (aka medicago sativa)
I: medicago lupulina
J: ulva picorna-like virus 1
K: None of the above. | [K; H] |
<Instruct>: Given the context 'Plantazolicin, a novel microcin B17/streptolysin S-like natural product from Bacillus amyloliquefaciens FZB42.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus amyloliquefaciens fzb42]
<Options>: A: bacillus amyloliquefaciens fzb42 (aka bacillus velezensis fzb42)
B: bacillus amyloliquefaciens (bacillus amyloliquefaciens subsp. amyloliquefaciens) (aka bacillus amyloliquefaciens)
C: bacillus thermoamyloliquefaciens ('bacillus thermoamyloliquefaciens') (aka bacillus thermoamyloliquefaciens)
D: bacillus amyloliquefaciens ab01
E: bacillus amyloliquefaciens ap143
F: None of the above. | [B] |
<Instruct>: Given the context 'Here we report on a novel thiazole/oxazole-modified microcin (TOMM) from Bacillus amyloliquefaciens FZB42, a Gram-positive soil bacterium.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus amyloliquefaciens fzb42]
<Options>: A: bacillus amyloliquefaciens ebl11
B: bacillus amyloliquefaciens (bacillus amyloliquefaciens subsp. amyloliquefaciens) (aka bacillus amyloliquefaciens)
C: bacillus amylolyticus (aka paenibacillus amylolyticus)
D: bacillus amyloliquefaciens umaf6639
E: bacillus amyloliquefaciens egd-aq14
F: None of the above. | [B] |
<Instruct>: Given the context 'Like microcin B17 and streptolysin S, the TOMM from B. amyloliquefaciens FZB42 undergoes extensive posttranslational modification to become a bioactive natural product.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. amyloliquefaciens fzb42]
<Options>: A: bacillus amyloliquefaciens (bacillus amyloliquefaciens subsp. amyloliquefaciens) (aka bacillus amyloliquefaciens)
B: bacillus amyloliquefaciens group (operational group b. amyloliquefaciens) (aka bacillus amyloliquefaciens group)
C: bacillus amyloliquefaciens ap143
D: bacillus amyloliquefaciens ap71
E: bacillus amyloliquefaciens ebl11
F: None of the above. | [A] |
<Instruct>: Given the context 'Mismatch repair modulation of MutY activity drives Bacillus subtilis stationary-phase mutagenesis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus subtilis]
<Options>: A: bacillus mesentericus (aka bacillus subtilis)
B: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
C: bacillus aerius
D: bacillus amylolyticus (aka paenibacillus amylolyticus)
E: sowerbaea subtilis
F: None of the above. | [A] |
<Instruct>: Given the context 'Oxidative stress-induced DNA damage has been associated with generation of adaptive His(+) and Met(+) but not Leu(+) revertants in strain Bacillus subtilis YB955 (hisC952 metB5 leuC427).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [strain bacillus subtilis yb955 (hisc952 metb5 leuc427)]
<Options>: A: bacillus sp. 105
B: bacillus sp. y995
C: bacillus cereus strain is075 (aka bacillus cereus is075)
D: bacillus tyrosalemonis (aka bacillus sp. yas1)
E: bacillus sp. yb
F: None of the above. | [F] |
<Instruct>: Given the context 'Moreover, the increased rate of adaptive Leu(+) revertants produced by a MutSL knockout strain was significantly diminished following mutY disruption.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [mutsl knockout strain]
<Options>: A: salmonella virus mutine (aka kuttervirus mutine)
B: mute swan feces associated toti-like virus 1
C: fungal endophyte mut 891
D: semen metagenome
E: silvanus muticus
F: None of the above. | [F] |
<Instruct>: Given the context 'In conclusion, our results support the idea that MMR regulation of the mutagenic/antimutagenic properties of MutY promotes stationary-phase mutagenesis in B. subtilis cells.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. subtilis]
<Options>: A: bacillus mesentericus (aka bacillus subtilis)
B: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
C: bacillus (aka bacillus <walking sticks>)
D: sporobolus subtilis
E: bacillus mesentericus (aka bacillus pumilus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Mapping interactions between germinants and Clostridium difficile spores.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [clostridium difficile]
<Options>: A: clostridium intestinalis (aka clostridium intestinale)
B: clostridium septicum (bacillus septicus) (aka clostridium septicum)
C: ditrichum difficile (trichostomum difficile) (aka ditrichum difficile)
D: peptoclostridium difficile (aka clostridioides difficile)
E: exapion difficile (apion difficile) (aka exapion difficile)
F: None of the above. | [D] |
<Instruct>: Given the context 'Germination of Clostridium difficile spores is the first required step in establishing C. difficile-associated disease (CDAD).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [clostridium difficile; c. difficile]
<Options>: A: polytoma difficile
B: cosmarium difficile
C: clostridium thermarum
D: eubacterium difficile
E: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
F: clostridium rectalis
G: clostridium difficile m68 (aka clostridioides difficile m68)
H: clostridium difficile t11 (aka clostridioides difficile t11)
I: None of the above. | [E; E] |
<Instruct>: Given the context 'Germination of Clostridium difficile spores is the first required step in establishing C. difficile-associated disease (CDAD).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [clostridium difficile; c. difficile]
<Options>: A: bacillus septicus (aka clostridium septicum)
B: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
C: exapion difficile (apion difficile) (aka exapion difficile)
D: cosmarium difficile
E: clostridium thermarum
F: bacterium diphtheriae (aka corynebacterium diphtheriae)
G: clostridium difficile b-1 (aka clostridioides difficile b-1)
H: clostridium difficile m68 (aka clostridioides difficile m68)
I: flavobacterium difficile
J: None of the above. | [B; B] |
<Instruct>: Given the context 'Taurocholate (a bile salt) and glycine (an amino acid) have been shown to be important germinants of C. difficile spores.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: bacterium diphtheriae (aka corynebacterium diphtheriae)
B: peptoclostridium difficile (aka clostridioides difficile)
C: flavobacterium difficile
D: clostridium difficile m68 (aka clostridioides difficile m68)
E: clostridium thermarum
F: None of the above. | [B] |
<Instruct>: Given the context 'In the present study, we tested a series of glycine and taurocholate analogs for the ability to induce or inhibit C. difficile spore germination.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: clostridium difficile b-1 (aka clostridioides difficile b-1)
B: apion difficile (aka exapion difficile)
C: peptoclostridium difficile (aka clostridioides difficile)
D: clostridium difficile t61 (aka clostridioides difficile t61)
E: trichostomum difficile (aka ditrichum difficile)
F: None of the above. | [C] |
<Instruct>: Given the context 'The C. difficile germination machinery also recognizes other hydrophobic amino acids.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: flavobacterium difficile
B: bacterium diphtheriae (aka corynebacterium diphtheriae)
C: clostridium difficile b-1 (aka clostridioides difficile b-1)
D: eubacterium difficile
E: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
F: None of the above. | [E] |
<Instruct>: Given the context 'In contrast, the 6- and 7-hydroxyl groups are required for inhibition of C. difficile spore germination.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: clostridium difficile b-1 (aka clostridioides difficile b-1)
B: clostridium thermarum
C: clostridium difficile m68 (aka clostridioides difficile m68)
D: eubacterium difficile
E: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
F: None of the above. | [E] |
<Instruct>: Given the context 'Similarly, C. difficile spores are able to detect taurocholate analogs with shorter, but not longer, alkyl amino sulfonic acid side chains.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980) (aka clostridioides difficile)
B: apion difficile (aka exapion difficile)
C: clostridium difficile strain b-1 (aka clostridioides difficile b-1)
D: eubacterium difficile
E: clostridium difficile t61 (aka clostridioides difficile t61)
F: None of the above. | [A] |
<Instruct>: Given the context 'Finally, a taurocholate analog with an m-aminobenzenesulfonic acid side chain is a strong inhibitor of C. difficile spore germination.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: clostridium difficile m68 (aka clostridioides difficile m68)
B: trichostomum difficile (aka ditrichum difficile)
C: clostridioides difficile (clostridium difficile (hall and o'toole 1935) prevot 1938 (approved lists 1980)) (aka clostridioides difficile)
D: flavobacterium difficile
E: eubacterium difficile
F: None of the above. | [C] |
<Instruct>: Given the context 'In conclusion, C. difficile spores recognize both amino acids and taurocholate through multiple interactions that are required to bind the germinants and/or activate the germination machinery.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: bacterium diphtheriae (aka corynebacterium diphtheriae)
B: clostridium thermarum
C: exapion difficile (apion difficile) (aka exapion difficile)
D: bacillus septicus (aka clostridium septicum)
E: peptoclostridium difficile (aka clostridioides difficile)
F: None of the above. | [E] |
<Instruct>: Given the context 'In conclusion, C. difficile spores recognize both amino acids and taurocholate through multiple interactions that are required to bind the germinants and/or activate the germination machinery.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. difficile]
<Options>: A: bacterium diphtheriae (aka corynebacterium diphtheriae)
B: bacillus septicus (aka clostridium septicum)
C: exapion difficile (apion difficile) (aka exapion difficile)
D: clostridium thermarum
E: None of the above. | [E] |
<Instruct>: Given the context 'In vitro studies of peptidoglycan binding and hydrolysis by the Bacillus anthracis germination-specific lytic enzyme SleB.
The Bacillus anthracis endospore loses resistance properties during germination when its cortex peptidoglycan is degraded by germination-specific lytic enzymes (GSLEs).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus anthracis]
<Options>: A: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
B: bacillus cereus biovar anthracis
C: bacillus aerophilus
D: anthrax
E: anthrax (aka bacillus anthracis)
F: None of the above. | [E] |
<Instruct>: Given the context 'As the conditions and limitations for SleB activity are further elucidated, they will enable the development of treatments that stimulate premature germination of B. anthracis spores, greatly simplifying decontamination measures.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. anthracis]
<Options>: A: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
B: bacillus cereus var. anthracis (aka bacillus anthracis)
C: bacillus cytotoxicus (bacillus cytotoxis) (aka bacillus cytotoxicus)
D: anthrax
E: bacillus necrophorus (aka fusobacterium necrophorum)
F: None of the above. | [B] |
<Instruct>: Given the context 'Glucose-dependent activation of Bacillus anthracis toxin gene expression and virulence requires the carbon catabolite protein CcpA.
Sensing environmental conditions is an essential aspect of bacterial physiology and virulence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus anthracis]
<Options>: A: bacillus cereus biovar anthracis
B: anthrax bacterium (aka bacillus anthracis)
C: anthrax anthrax (musca anthrax) (aka anthrax anthrax)
D: pestisella pestis (aka yersinia pestis)
E: bacillus bronchicanis (aka bordetella bronchiseptica)
F: None of the above. | [B] |
<Instruct>: Given the context 'In Bacillus anthracis, the causative agent of anthrax, transcription of the two major virulence factors, toxin and capsule, is triggered by bicarbonate, a major compound in the mammalian body.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus anthracis; anthrax]
<Options>: A: anthrax anthrax (musca anthrax) (aka anthrax anthrax)
B: bacillus bronchisepticus (aka bordetella bronchiseptica)
C: anthribus nebulosus (brachytarsus nebulosus) (aka anthribus nebulosus)
D: bacillus cereus var. anthracis (aka bacillus anthracis)
E: pasteurella pestis (aka yersinia pestis)
F: anthrax virgo
G: anthrax incomptus
H: bacillus cytotoxicus (bacillus cytotoxis) (aka bacillus cytotoxicus)
I: musca anthrax (aka anthrax anthrax)
J: None of the above. | [D; D] |
<Instruct>: Given the context 'In Bacillus anthracis, the causative agent of anthrax, transcription of the two major virulence factors, toxin and capsule, is triggered by bicarbonate, a major compound in the mammalian body.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bacillus anthracis; anthrax]
<Options>: A: bacillus cereus var. anthracis (aka bacillus anthracis)
B: anthribus nebulosus (brachytarsus nebulosus) (aka anthribus nebulosus)
C: bacillus thuringiensis (bacillus thuringiensis berliner 1915 (approved lists 1980)) (aka bacillus thuringiensis)
D: musca anthrax (aka anthrax anthrax)
E: pestisella pestis (aka yersinia pestis)
F: anthrax
G: anthrax virgo
H: platypeza anthrax
I: bacillus cytotoxicus (bacillus cytotoxis) (aka bacillus cytotoxicus)
J: None of the above. | [A; A] |
<Instruct>: Given the context 'Here it is shown that glucose is an additional signaling molecule recognized by B. anthracis for toxin synthesis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. anthracis]
<Options>: A: anthrax (aka bacillus anthracis)
B: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
C: bacillus necrophorus (aka fusobacterium necrophorum)
D: pestisella pestis (aka yersinia pestis)
E: anthrax anthrax (musca anthrax) (aka anthrax anthrax)
F: None of the above. | [A] |
<Instruct>: Given the context 'The virulence of a B. anthracis strain from which the ccpA gene was deleted was significantly attenuated in a mouse model of infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. anthracis strain; mouse]
<Options>: A: mus terricolor (earth-colored mouse) (aka mus terricolor)
B: bacillus pestis (aka yersinia pestis)
C: western wild mouse (aka mus spretus)
D: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
E: bacillus anthracis a16 (aka bacillus anthracis str. a16)
F: bacillus anthracis westernna (aka bacillus anthracis str. western north america usa6153)
G: bacillus anthracis (bacillus cereus var. anthracis) (aka bacillus anthracis)
H: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
I: mouse (aka mus <genus>)
J: house mouse (aka mus musculus)
K: None of the above. | [G; J] |
<Instruct>: Given the context 'The virulence of a B. anthracis strain from which the ccpA gene was deleted was significantly attenuated in a mouse model of infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. anthracis strain; mouse]
<Options>: A: western wild mouse (aka mus spretus)
B: bacillus anthracis a16 (aka bacillus anthracis str. a16)
C: bacillus anthracis westernna (aka bacillus anthracis str. western north america usa6153)
D: mouse (aka mus <genus>)
E: mus terricolor (earth-colored mouse) (aka mus terricolor)
F: bacillus pestis (aka yersinia pestis)
G: bacillus cereus frankland and frankland 1887 (approved lists 1980) (aka bacillus cereus)
H: mus musculus musculus (eastern european house mouse) (aka mus musculus musculus)
I: bacillus anthracis (bacillus cereus var. anthracis) (aka bacillus anthracis)
J: None of the above. | [I; J] |
<Instruct>: Given the context 'The virulence of a B. anthracis strain from which the ccpA gene was deleted was significantly attenuated in a mouse model of infection.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. anthracis strain; mouse]
<Options>: A: bacillus anthracis (bacillus cereus var. anthracis) (aka bacillus anthracis)
B: southeastern asian house mouse (aka mus musculus castaneus)
C: bacillus anthracis strain a2012 (aka bacillus anthracis str. a2012)
D: bacillus cereus (bacillus cereus frankland and frankland 1887 (approved lists 1980)) (aka bacillus cereus)
E: mus musculus (house mouse) (aka mus musculus)
F: bacillus anthracis bf1 (aka bacillus anthracis str. bf1)
G: mus terricolor (earth-colored mouse) (aka mus terricolor)
H: mus famulus (servant mouse) (aka mus famulus)
I: bacillus anthracis a16 (aka bacillus anthracis str. a16)
J: mus domesticus (aka mus musculus domesticus)
K: None of the above. | [A; E] |
<Instruct>: Given the context 'The data demonstrated that glucose is an important host environment-derived signaling molecule and that CcpA is a molecular link between environmental sensing and B. anthracis pathogenesis.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. anthracis]
<Options>: A: bacteridium anthracis (aka bacillus anthracis)
B: anthrax anthrax (musca anthrax) (aka anthrax anthrax)
C: anthrax
D: bacterium pestis (aka yersinia pestis)
E: bacillus cytotoxis (aka bacillus cytotoxicus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Structural and functional analysis of the type III secretion system from Pseudomonas fluorescens Q8r1-96.
Pseudomonas fluorescens Q8r1-96 represents a group of rhizosphere strains responsible for the suppressiveness of agricultural soils to take-all disease of wheat.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [pseudomonas fluorescens q8r1-96]
<Options>: A: pseudomonas fluorescens bv. f
B: pseudomonas fluorescens pcai_d6.2
C: pseudomonas fluorescens (bacillus fluorescens liquefaciens) (aka pseudomonas fluorescens)
D: pseudomonas fluorescens nbrc 14160
E: pseudomonas quebecensis
F: None of the above. | [C] |
<Instruct>: Given the context 'In this study, we analyzed the genome of Q8r1-96 and identified a type III protein secretion system (T3SS) gene cluster that has overall organization similar to that of the T3SS gene cluster of the plant pathogen Pseudomonas syringae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96; pseudomonas syringae]
<Options>: A: cloning vector ia1_yqr
B: pseudomonas herbicola (aka pantoea agglomerans)
C: pseudomonas syringae subsp. syringae (aka pseudomonas syringae)
D: pseudomonas syringae icmp 19498
E: pseudomonas paralactis
F: cloning vector ia(9)_hqn_ra(1)_hqn
G: pseudomonas syringae icmp 19499
H: cloning vector ra(1)_hqn
I: cloning vector ia5_yqr_dimer
J: halobacteriales archaeon qh_8_68_33
K: None of the above. | [K; C] |
<Instruct>: Given the context 'In this study, we analyzed the genome of Q8r1-96 and identified a type III protein secretion system (T3SS) gene cluster that has overall organization similar to that of the T3SS gene cluster of the plant pathogen Pseudomonas syringae.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96; pseudomonas syringae]
<Options>: A: cloning vector ia1_yqr_dimer
B: pseudomonas syringae kn2.a.3
C: cloning vector ia1_gkr
D: pseudomonas syringae tomato (aka pseudomonas syringae pv. tomato)
E: cloning vector ia(5)_hqn_fa(2)_ksl
F: pseudomonas syringae (pseudomonas syringae subsp. syringae) (aka pseudomonas syringae)
G: pseudomonas poae
H: cloning vector ia5_yqr_dimer
I: cloning vector ia(10)_yqr
J: pseudomonas rhizosphaerae
K: None of the above. | [K; F] |
<Instruct>: Given the context 'We also screened a collection of 30 closely related P. fluorescens strains and detected the T3SS genes in all but one of them.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. fluorescens strains]
<Options>: A: pseudomonas fluorescens group sp.
B: pseudomonas protegens
C: pseudomonas ovalis (aka pseudomonas putida)
D: pseudomonas fluorescens (bacillus fluorescens liquefaciens) (aka pseudomonas fluorescens)
E: pseudomonas [fluorescens] atcc 17400
F: None of the above. | [D] |
<Instruct>: Given the context 'The Q8r1-96 genome contained ropAA and ropM type III effector genes, which are orthologs of the P. syringae effector genes hopAA1-1 and hopM1, as well as a novel type III effector gene designated ropB. These type III effector genes encoded proteins that were secreted in culture and injected into plant cells by both P. syringae and Q8r1-96 T3SSs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96; p. syringae]
<Options>: A: pseudomonas paralactis
B: pseudomonas syringae kn2.a.3
C: cloning vector ia5_yqr_dimer
D: cloning vector ia1_yqr
E: cloning vector ra(1)_hqn
F: pseudomonas syringae (pseudomonas syringae subsp. syringae) (aka pseudomonas syringae)
G: cloning vector ia(5)_hqn_fa(2)_ksl
H: pseudomonas herbicola (aka pantoea agglomerans)
I: phyllactinia syringae
J: cloning vector ia1_htk
K: None of the above. | [K; F] |
<Instruct>: Given the context 'The Q8r1-96 genome contained ropAA and ropM type III effector genes, which are orthologs of the P. syringae effector genes hopAA1-1 and hopM1, as well as a novel type III effector gene designated ropB. These type III effector genes encoded proteins that were secreted in culture and injected into plant cells by both P. syringae and Q8r1-96 T3SSs.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96; p. syringae]
<Options>: A: phytophthora syringae (phloeophthora syringae) (aka phytophthora syringae)
B: cloning vector ra(2)_hqn
C: halobacteriales archaeon qh_1_68_42
D: bacillus pyocyaneus (aka pseudomonas aeruginosa)
E: pseudomonas syringae lmc.p80
F: cloning vector ia1_yqr_dimer
G: pseudomonas syringae (pseudomonas syringae subsp. syringae) (aka pseudomonas syringae)
H: phyllactinia syringae
I: cloning vector ia1_ksl
J: cloning vector ia1_yqr
K: None of the above. | [K; G] |
<Instruct>: Given the context 'The Q8r1-96 T3SS was expressed in the rhizosphere, but mutants lacking a functional T3SS were not altered in their rhizosphere competence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96]
<Options>: A: cloning vector ra(1)_hqn
B: cloning vector ia1_ksl
C: cloning vector ia5_yqr_dimer
D: cloning vector ia1_yqr_dimer
E: cloning vector ia(10)_yqr
F: None of the above. | [F] |
<Instruct>: Given the context 'The Q8r1-96 type III effectors RopAA, RopB, and RopM were capable of suppressing the hypersensitive response and production of reactive oxygen species, two plant immune responses.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [q8r1-96]
<Options>: A: cloning vector ia(9)_hqn_ra(1)_hqn
B: cloning vector ia(11)_yqr
C: cloning vector ia1_yqr
D: cloning vector ia(5)_hqn_fa(2)_ksl
E: cloning vector ia1_yqr_dimer
F: None of the above. | [F] |
<Instruct>: Given the context 'A cis-encoded antisense small RNA regulated by the HP0165-HP0166 two-component system controls expression of ureB in Helicobacter pylori.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [helicobacter pylori]
<Options>: A: helicobacter suis (candidatus helicobacter suis) (aka helicobacter suis)
B: helicobacter
C: helicobacter cholecystus
D: campylobacter pyloridis (aka helicobacter pylori)
E: helicobacter bilis
F: None of the above. | [D] |
<Instruct>: Given the context 'Expression of urease is essential for gastric colonization by Helicobacter pylori.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [helicobacter pylori]
<Options>: A: helicobacter
B: helicobacter felis
C: campylobacter pylori (aka helicobacter pylori)
D: candidatus helicobacter suis (aka helicobacter suis)
E: helicobacter muridarum
F: None of the above. | [C] |
<Instruct>: Given the context 'C-terminal domain residues important for secretion and attachment of RgpB in Porphyromonas gingivalis.
Porphyromonas gingivalis, a periodontal pathogen, expresses a group of surface proteins with a common C-terminal domain (CTD) that are exported by a novel secretion system to the surface, where they are covalently attached.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [porphyromonas gingivalis]
<Options>: A: porphyromonas gingivalis sjd12
B: porphyromonas pasteri
C: capnocytophaga gingivalis
D: porphyromonas gingivalis (bacteroides gingivalis) (aka porphyromonas gingivalis)
E: porphyromonas vaginalis
F: None of the above. | [D] |
<Instruct>: Given the context 'The mutant RgpB proteins were expressed in a P. gingivalis host lacking functional RgpB and RgpA Arg-specific proteases.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. gingivalis]
<Options>: A: pasteurella
B: porphyromonas gingivalis (bacteroides gingivalis) (aka porphyromonas gingivalis)
C: porphyromonas gingivalis sjd5
D: pasteuria
E: porphyromonas gingivalis sjd11
F: None of the above. | [B] |
<Instruct>: Given the context 'Effects of deficiency and overdose of group 2 sigma factors in triple inactivation strains of Synechocystis sp. strain PCC 6803.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [synechocystis sp. strain pcc 6803]
<Options>: A: synechocystis sp. s-1
B: synechocystis sp. pcc 6906 (synechocystis sp. atcc 27266) (aka synechocystis sp. pcc 6906)
C: synechocystis sp. (atcc 27184) (aka synechocystis sp. pcc 6803)
D: synechocystis sp. atcc 27186 (aka synechocystis sp. pcc 6805)
E: synechocystis sp. pcc 6702 (synechocystis sp. atcc 27171) (aka synechocystis sp. pcc 6702)
F: None of the above. | [C] |
<Instruct>: Given the context 'Effects of deficiency and overdose of group 2 sigma factors in triple inactivation strains of Synechocystis sp. strain PCC 6803.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [synechocystis sp. strain pcc 6803]
<Options>: A: synechocystis sp. pcc 6702 (synechocystis sp. atcc 27171) (aka synechocystis sp. pcc 6702)
B: synechocystis sp. pcc 6906 (synechocystis sp. atcc 27266) (aka synechocystis sp. pcc 6906)
C: synechocystis sp. s-1
D: synechocystis sp. atcc 27186 (aka synechocystis sp. pcc 6805)
E: None of the above. | [E] |
<Instruct>: Given the context 'The cyanobacterium Synechocystis sp. strain PCC 6803 encodes nine sigma factors, all belonging to the sigma(70) family.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [synechocystis sp. strain pcc 6803]
<Options>: A: synechococcus sp. ps673
B: synechocystis sp.
C: synechocystis sp. s-1
D: synechocystis sp. atcc 27186 (aka synechocystis sp. pcc 6805)
E: synechocystis sp. (atcc 27184) (aka synechocystis sp. pcc 6803)
F: None of the above. | [E] |
<Instruct>: Given the context 'We found that, similar to kinetoplastid aldolases, the fructose 1,6-bisphosphate aldolase of Diplonema papillatum possesses a type 2-peroxisomal targeting signal.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [diplonema papillatum]
<Options>: A: phragmidium papillatum
B: enerthenema papillatum
C: faramea papillata
D: gymnomitrion papillosum
E: polytrichastrum papillatum
F: None of the above. | [F] |
<Instruct>: Given the context 'In contrast, orotidine-5'-monophosphate decarboxylase, a non-glycolytic glycosomal enzyme in kinetoplastids, was shown to be a cytosolic enzyme in D. papillatum.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [d. papillatum]
<Options>: A: faramea papillata
B: drosanthemum papillatum
C: seiridium papillatum
D: phragmidium papillatum
E: fusarium papillatum (neocosmospora papillata) (aka fusarium papillatum)
F: None of the above. | [F] |
<Instruct>: Given the context 'P. penardii and P. niei sampled from various geographical localities were examined by means of light and scanning electron microscopy.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. penardii; p. niei]
<Options>: A: pneumocystis jirovecii
B: unruhdinium niei (peridiniopsis niei) (aka unruhdinium niei)
C: babesia peircei
D: penaincisalia penai
E: phocoenobacter uteri (pasteurella phocoenarum) (aka phocoenobacter uteri)
F: phaenomenella nicoi
G: buchnera aphidicola (nippolachnus piri)
H: peridiniopsis penardii (aka unruhdinium penardii)
I: paenibacillus piri
J: proepeorus nipponicus (epeorus nipponicus) (aka proepeorus nipponicus)
K: None of the above. | [H; B] |
<Instruct>: Given the context 'P. penardii and P. niei sampled from various geographical localities were examined by means of light and scanning electron microscopy.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. penardii; p. niei]
<Options>: A: penapis penai
B: parasericostoma peniai
C: peridiniopsis niei (aka unruhdinium niei)
D: plasmopara penniseti
E: penidiella
F: phaenomenella nicoi
G: nyungwea pyneei
H: plesiozela nielseni
I: unruhdinium penardii (peridiniopsis penardii) (aka unruhdinium penardii)
J: phanaeus nimrod
K: None of the above. | [I; C] |
<Instruct>: Given the context 'Molecular phylogenetic analyses based on SSU, LSU and ITS indicated P. niei, P. penardii and P. penardii var.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. niei]
<Options>: A: phanaeus nimrod
B: unruhdinium niei (peridiniopsis niei) (aka unruhdinium niei)
C: proepeorus nipponicus (epeorus nipponicus) (aka proepeorus nipponicus)
D: pasteuria nishizawae
E: phaenomenella nicoi
F: None of the above. | [B] |
<Instruct>: Given the context 'The new variety possessed an endosymbiotic diatom which was similar to P. penardii and P. kevei, whereas the endosymbiont was not present in cells of P. niei.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. niei]
<Options>: A: plesiozela nielseni
B: pasteuria nishizawae
C: nyungwea pyneei
D: peridiniopsis niei (aka unruhdinium niei)
E: babesia peircei
F: None of the above. | [D] |
<Instruct>: Given the context 'Effects of temperature on the development and population growth of the sycamore lace bug, Corythucha ciliata.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sycamore lace bug; corythucha ciliata]
<Options>: A: cicadula ciliata
B: cybaeus monticola
C: callosa ciliata
D: caulibugula ciliata
E: tea seed bug (aka poecilocoris latus)
F: tamarind pod-borer (aka sitophilus linearis)
G: commiphora ciliata
H: syrnolopsis lacustris
I: sycamore lace bug (aka corythucha ciliata)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'Effects of temperature on the development and population growth of the sycamore lace bug, Corythucha ciliata.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sycamore lace bug; corythucha ciliata]
<Options>: A: chaetanthera ciliata
B: isachne muscicola
C: sycamore seed bug (aka belonochilus numenius)
D: lophozia ciliata
E: philotheca ciliata
F: bulbothrix lacinia
G: cybaeus monticola
H: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
I: sycamore lace bug (aka corythucha ciliata)
J: None of the above. | [I; I] |
<Instruct>: Given the context 'The sycamore lace bug, Corythucha ciliata (Say) (Hemiptera: Tingidae), is an important invasive exotic pest of Platanus (Proteales: Platanaceae) trees in China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sycamore lace bug; corythucha ciliata]
<Options>: A: shiny bluebottle fly (aka cynomya cadaverina)
B: western sycamore (aka platanus racemosa)
C: xylocopa ciliata
D: sycamore lace bug (aka corythucha ciliata)
E: sycamore seed bug (aka belonochilus numenius)
F: callosa ciliata
G: commiphora ciliata
H: solitalea lacus
I: chaetanthera ciliata
J: None of the above. | [D; D] |
<Instruct>: Given the context 'The sycamore lace bug, Corythucha ciliata (Say) (Hemiptera: Tingidae), is an important invasive exotic pest of Platanus (Proteales: Platanaceae) trees in China.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sycamore lace bug; corythucha ciliata]
<Options>: A: plectronia ciliata (aka canthium ciliatum)
B: philotheca ciliata
C: tea seed bug (aka poecilocoris latus)
D: chrysocoma ciliata
E: aphidius sonchi
F: lantana lace bug (aka teleonemia scrupulosa)
G: sycamore lace bug (aka corythucha ciliata)
H: aciculites ciliata
I: tamarind pod-borer (aka sitophilus linearis)
J: None of the above. | [G; G] |
<Instruct>: Given the context 'The objective of this study was to determine the effects of temperature on C. ciliata in the laboratory so that forecasting models based on heat accumulation units could be developed for the pest.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. ciliata]
<Options>: A: crassula ciliata
B: chaetosphaeria ciliata
C: tetratheca ciliata
D: commiphora ciliata
E: corythuca ciliata (aka corythucha ciliata)
F: None of the above. | [E] |
<Instruct>: Given the context 'Development and fecundity of C. ciliata reared on leaves of London plane tree (Platanus x acerifolia) were investigated at seven constant temperatures (16, 19, 22, 26, 30, 33, and 36^0 C) and at a relative humidity of 80% with a photoperiod of 14:10 (L:D).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. ciliata; london plane tree; platanus x acerifolia]
<Options>: A: cryptocoryne ciliata
B: carpinus londoniana
C: chaetanthera ciliata
D: london plane tree (aka platanus x hispanica)
E: phyllanthus spruceanus
F: phyllanthus comosus
G: roldana platanifolia
H: coenosia ciliata
I: ranunculus platanifolius
J: branchinella arborea
K: cavanillesia platanifolia
L: corythuca ciliata (aka corythucha ciliata)
M: platanthera x hybrida
N: cladonia ciliata
O: None of the above. | [L; D; D] |
<Instruct>: Given the context 'Development and fecundity of C. ciliata reared on leaves of London plane tree (Platanus x acerifolia) were investigated at seven constant temperatures (16, 19, 22, 26, 30, 33, and 36^0 C) and at a relative humidity of 80% with a photoperiod of 14:10 (L:D).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. ciliata; london plane tree; platanus x acerifolia]
<Options>: A: platiana
B: london plane tree (aka platanus x hispanica)
C: styrax platanifolius
D: cryptandra ciliata
E: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
F: erica platycalyx
G: campanula ciliata
H: phyllobates sylvatica (aka hyloxalus sylvaticus)
I: corythucha ciliata (corythuca ciliata) (aka corythucha ciliata)
J: platanus occidentalis (eastern plane-tree) (aka platanus occidentalis)
K: ranunculus platanifolius
L: chrysocoma ciliata
M: platanus (plane trees) (aka platanus)
N: phacus platyaulax
O: None of the above. | [I; B; B] |
<Instruct>: Given the context 'Development and fecundity of C. ciliata reared on leaves of London plane tree (Platanus x acerifolia) were investigated at seven constant temperatures (16, 19, 22, 26, 30, 33, and 36^0 C) and at a relative humidity of 80% with a photoperiod of 14:10 (L:D).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. ciliata; london plane tree; platanus x acerifolia]
<Options>: A: phyllanthus multiflorus (aka kirganelia reticulata)
B: phyllanthus taitensis
C: phyllanthus spruceanus
D: phacus platalea
E: corythucha ciliata (corythuca ciliata) (aka corythucha ciliata)
F: chaetanthera ciliata
G: chrysocoma ciliata
H: roldana platanifolia
I: london plane tree (aka platanus x hispanica)
J: phylica arborea
K: eastern plane-tree (aka platanus occidentalis)
L: cavanillesia platanifolia
M: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
N: commiphora ciliata
O: None of the above. | [E; I; I] |
<Instruct>: Given the context 'The developmental time from egg hatching to adult emergence was respectively 47.6, 35.0, 24.1, 20.0, and 17.1 days at the temperatures of 19, 22, 26, 30, and 33^0 C. C. ciliata could not complete full development at 16^0 and 36^0 C.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. ciliata]
<Options>: A: chaetanthera ciliata
B: cryptandra ciliata
C: corythuca ciliata (aka corythucha ciliata)
D: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
E: cladonia ciliata
F: None of the above. | [C] |
<Instruct>: Given the context 'The population trend index (I) of C. ciliata was the highest (130.1) at 30^0 C and the lowest (24.9) at 19^0 C. Therefore, the optimal developmental temperature for C. ciliata was determined to be 30^0 C.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. ciliata]
<Options>: A: ciliella ciliata (helix ciliata) (aka ciliella ciliata)
B: caulibugula ciliata
C: corythucha ciliata (corythuca ciliata) (aka corythucha ciliata)
D: chaetanthera ciliata
E: chaetosphaeria ciliata
F: None of the above. | [C] |
<Instruct>: Given the context 'Plant infestation, stem borer density, parasitism, and parasitoid abundance were assessed during two years in two host plants, Zea mays (L.) (Cyperales: Poaceae) and Sorghum bicolor (L.) (Cyperales: Poaceae), in cultivated habitats.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [zea mays (l.); sorghum bicolor (l.)]
<Options>: A: zea mays var. japonica (aka zea mays)
B: sorghum grande
C: broomcorn (aka sorghum bicolor)
D: nupserha bicolor (stibara bicolor) (aka nupserha bicolor)
E: zea mexicana (aka zea mays subsp. mexicana)
F: teosinte (aka zea perennis)
G: zelus grassans
H: solanum bicolor
I: sorghum angustum
J: zethus mexicanus (apis mexicana) (aka zethus mexicanus)
K: None of the above. | [A; C] |
<Instruct>: Given the context 'Plant infestation, stem borer density, parasitism, and parasitoid abundance were assessed during two years in two host plants, Zea mays (L.) (Cyperales: Poaceae) and Sorghum bicolor (L.) (Cyperales: Poaceae), in cultivated habitats.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [zea mays (l.); sorghum bicolor (l.)]
<Options>: A: zelus grassans
B: sorghum angustum
C: nupserha bicolor (stibara bicolor) (aka nupserha bicolor)
D: solanum bicolor
E: zelurus petax
F: zela zeus
G: fumaria bicolor
H: sorghum vulgare (aka sorghum bicolor)
I: maize (aka zea mays)
J: zethus
K: None of the above. | [I; H] |
<Instruct>: Given the context 'Across habitats, plant infestation (23.2%), stem borer density (2.2 per plant), and larval parasitism (15.0%) were highest in maize in cultivated habitats.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [maize]
<Options>: A: maize (aka zea mays)
B: zelus grassans
C: heliothis zea (aka helicoverpa zea)
D: agromyces ramosum (aka agromyces ramosus)
E: corn smut (aka mycosarcoma maydis)
F: None of the above. | [A] |
<Instruct>: Given the context 'Cotesia sesamiae (Cameron) and C. flavipes Cameron (Hymenoptera: Braconidae) were the key parasitoids in cultivated habitats (both species accounted for 76.4% of parasitized stem borers in cereal crops), but not in natural habitats (the two Cotesia species accounted for 14.5% of parasitized stem borers in wild host plants).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cotesia sesamiae (cameron); c. flavipes cameron]
<Options>: A: descampsina sesamiae
B: cotesia flavipes
C: chionea crassipes
D: ochthebius flavipes
E: macrosporium sesami (aka alternaria sesami)
F: ipomoea sescossiana
G: sesamia congoensis
H: cryptocephalus flavipes
I: apanteles sesamiae (aka cotesia sesamiae)
J: chorinaeus fortipes (aka carria fortipes)
K: None of the above. | [I; B] |
<Instruct>: Given the context 'Cotesia sesamiae (Cameron) and C. flavipes Cameron (Hymenoptera: Braconidae) were the key parasitoids in cultivated habitats (both species accounted for 76.4% of parasitized stem borers in cereal crops), but not in natural habitats (the two Cotesia species accounted for 14.5% of parasitized stem borers in wild host plants).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cotesia sesamiae (cameron); c. flavipes cameron]
<Options>: A: sessilanthera citrina
B: pherocera flavipes
C: cotesia flavipes
D: cotesia sesamiae (apanteles sesamiae) (aka cotesia sesamiae)
E: clavaria flavipes
F: coryne sessilis (aka zanclea sessilis)
G: sesamia congoensis
H: chorebus flavipes
I: pantoea sesami
J: ceresium flavipes
K: None of the above. | [D; C] |
<Instruct>: Given the context 'Factors of susceptibility of human myiasis caused by the New World screw-worm, Cochliomyia hominivorax in Sao Gonsigmaalo, Rio de Janeiro, Brazil.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; new world screw-worm; cochliomyia hominivorax]
<Options>: A: clitocybula grisella (fayodia grisella) (aka clitocybula grisella)
B: corydoras gossei (aka hoplisoma gossei)
C: great apes (aka hominidae)
D: homo sapiens (human) (aka homo sapiens)
E: hominiventricola filiformis
F: sphaeria humana (aka sordaria humana)
G: pig roundworm (aka ascaris suum)
H: human louse (aka pediculus humanus)
I: primary screw-worm (aka cochliomyia hominivorax)
J: asian blue worm (aka perionyx excavatus)
K: tamarix gallica
L: macrobiotus sapiens
M: giant tube worm (aka riftia pachyptila)
N: rock worm (aka arenicola marina)
O: None of the above. | [D; I; I] |
<Instruct>: Given the context 'Factors of susceptibility of human myiasis caused by the New World screw-worm, Cochliomyia hominivorax in Sao Gonsigmaalo, Rio de Janeiro, Brazil.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; new world screw-worm; cochliomyia hominivorax]
<Options>: A: macrobiotus sapiens
B: southern armyworm (aka spodoptera eridania)
C: humans (aka homo)
D: red-striped needleworm (aka epinotia radicana)
E: old world screwworm fly (aka chrysomya bezziana)
F: lindgomyces carolinensis
G: xenorhabdus hominickii
H: niallia hominis
I: glossus humanus (cardium humanum) (aka glossus humanus)
J: hargeria rapax (leptochelia rapax) (aka hargeria rapax)
K: human (aka homo sapiens)
L: pediculus humanus (human louse) (aka pediculus humanus)
M: primary screw-worm (aka cochliomyia hominivorax)
N: tube worm (aka riftia pachyptila)
O: None of the above. | [K; M; M] |
<Instruct>: Given the context 'Factors of susceptibility of human myiasis caused by the New World screw-worm, Cochliomyia hominivorax in Sao Gonsigmaalo, Rio de Janeiro, Brazil.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; new world screw-worm; cochliomyia hominivorax]
<Options>: A: neanderthal man (aka homo sapiens neanderthalensis)
B: hargeria rapax (leptochelia rapax) (aka hargeria rapax)
C: lindgomyces carolinensis
D: primary screw-worm (aka cochliomyia hominivorax)
E: slow worm (aka anguis fragilis)
F: pediculus humanus corporis (pediculus humanus humanus) (aka pediculus humanus corporis)
G: xenorhabdus hominickii
H: sphaeria humana (aka sordaria humana)
I: red-striped needleworm (aka epinotia radicana)
J: southern armyworm (aka spodoptera eridania)
K: common dung-worm (aka eisenia fetida)
L: hominidae (great apes) (aka hominidae)
M: tamarix gallica
N: homo sapiens (human) (aka homo sapiens)
O: None of the above. | [N; D; D] |
<Instruct>: Given the context 'This study was carried out between July 2007 and June 2008 and reports on the occurrence of human myiasis caused by the New World screwworm, Cochliomyia hominivorax (Coquerel) (Diptera: Calliphoridae) in Sao Gonsigmaalo in the state of Rio de Janeiro, Brazil.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; cochliomyia hominivorax]
<Options>: A: cardium humanum (aka glossus humanus)
B: human louse (aka pediculus humanus)
C: hermaeophaga cicatrix (haltica cicatrix) (aka hermaeophaga cicatrix)
D: hymenobacter terricola
E: cochliomyia hominivorax (primary screw-worm) (aka cochliomyia hominivorax)
F: cochliobolus heterostrophus (aka bipolaris maydis)
G: xenorhabdus hominickii
H: great apes (aka hominidae)
I: homo sapiens (human) (aka homo sapiens)
J: humans (aka homo)
K: None of the above. | [I; E] |
<Instruct>: Given the context 'This study was carried out between July 2007 and June 2008 and reports on the occurrence of human myiasis caused by the New World screwworm, Cochliomyia hominivorax (Coquerel) (Diptera: Calliphoridae) in Sao Gonsigmaalo in the state of Rio de Janeiro, Brazil.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human; cochliomyia hominivorax]
<Options>: A: tamarix gallica
B: carcharhinus humani
C: sphaeria humana (aka sordaria humana)
D: homo sapiens (human) (aka homo sapiens)
E: cochliobolus heterostrophus (aka bipolaris maydis)
F: hermaeophaga cicatrix (haltica cicatrix) (aka hermaeophaga cicatrix)
G: heteromallus cavicola
H: primary screw-worm (aka cochliomyia hominivorax)
I: human body louse (aka pediculus humanus corporis)
J: macrobiotus sapiens
K: None of the above. | [D; H] |
<Instruct>: Given the context 'C. hominivorax were identified in all 22 cases of myiasis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [c. hominivorax]
<Options>: A: chilothorax
B: xenorhabdus hominickii
C: campylobacter avium
D: cochliomyia hominivorax (primary screw-worm) (aka cochliomyia hominivorax)
E: criconemella xenoplax (aka mesocriconema xenoplax)
F: None of the above. | [D] |
<Instruct>: Given the context 'This study investigated the suitability of a two step real-time RT-PCR melting curve analysis as a tool for the detection and discrimination of nine species in the plant virus family Luteoviridae, being Soybean dwarf virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [soybean dwarf virus]
<Options>: A: maize streak dwarfing virus
B: soybean vein necrosis virus
C: rice dwarf virus rdv (aka rice dwarf virus)
D: soybean dwarf virus
E: rice gall dwarf virus (rgdv (aka rice gall dwarf virus))
F: None of the above. | [D] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sbdv; bean leafroll virus; blrv; beet chlorosis virus]
<Options>: A: bruthen virus
B: beet leaf yellowing virus
C: salmon pancreas disease virus (spdv (aka salmon pancreas disease virus))
D: cotton leafroll virus (cotton leaf roll virus) (aka cotton leafroll virus)
E: brassica yellows virus
F: beet chlorosis virus
G: bovine syncytial virus (aka bovine foamy virus)
H: faba bean yellow leaf virus
I: disbo virus
J: bltrv-1 (aka betaricinrhavirus scapularis)
K: south bay virus
L: french bean leaf curl virus
M: infectious bovine rhinotracheitis virus (aka bovine alphaherpesvirus 1)
N: bean leaf roll virus (aka bean leafroll virus)
O: sindbis virus
P: beet yellow stunt virus
Q: plrv (aka potato leafroll virus) (aka potato leafroll virus)
R: beet soil-borne virus (bsbv (aka beet soil-borne virus))
S: beet western yellow virus (aka beet western yellows virus)
T: None of the above. | [T; N; N; F] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sbdv; bean leafroll virus; blrv; beet chlorosis virus]
<Options>: A: bequatrovirus troll (bacillus virus troll) (aka bequatrovirus troll)
B: cotton leafroll bushy virus
C: sac brood virus (aka sacbrood virus)
D: pepper leafroll virus
E: brassica yellows virus
F: blrv (aka bean leafroll virus) (aka bean leafroll virus)
G: spondweni virus
H: short beak and dwarfism syndrome virus
I: beet black scorch virus
J: bovine leukemia virus blv (aka bovine leukemia virus)
K: bluvavirus
L: bean leaf crumple virus (bean hoja arrugada virus) (aka bean leaf crumple virus)
M: bovine syncytial virus (aka bovine foamy virus)
N: beet western yellow virus (aka beet western yellows virus)
O: faba bean yellow leaf virus
P: sindbis virus
Q: beetrevirus
R: bovine rhinotracheitis virus (aka bovine alphaherpesvirus 1)
S: beet chlorosis virus
T: None of the above. | [T; F; F; S] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sbdv; bean leafroll virus; blrv; beet chlorosis virus]
<Options>: A: rbsdv (aka rice black streaked dwarf virus)
B: beet chlorosis virus
C: bean yellow dwarf virus
D: bean chlorosis virus
E: bean leafroll virus (blrv (aka bean leafroll virus))
F: south bay virus
G: bruthen virus
H: sugar beet yellows virus (aka beet yellows virus)
I: cotton leaf roll virus (aka cotton leafroll virus)
J: bovine respiratory syncytial virus brsv (aka bovine orthopneumovirus)
K: beet western yellows virus (bwyv (aka beet western yellows virus))
L: sindbis virus
M: plrv (aka potato leafroll virus) (aka potato leafroll virus)
N: sugar beet yellows virus, sbyv (aka beet yellows virus)
O: bovine respiratory syncytial virus
P: disbo virus
Q: potyvirus lupinus
R: blunervirus vaccinii
S: beet leaf yellowing virus
T: None of the above. | [T; E; E; B] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [sbdv; bean leafroll virus; blrv; beet chlorosis virus]
<Options>: A: faba bean yellow leaf virus
B: french bean leaf curl virus
C: beet chlorosis virus
D: bltrv-1 (aka betaricinrhavirus scapularis)
E: bovine leukemia virus blv (aka bovine leukemia virus)
F: bvdv-1 (aka bovine viral diarrhea virus 1)
G: bovine respiratory syncytial virus
H: bean chlorosis virus
I: beetrevirus
J: beet soil-borne virus (bsbv (aka beet soil-borne virus))
K: blrv (aka bean leafroll virus) (aka bean leafroll virus)
L: plrv (aka potato leafroll virus) (aka potato leafroll virus)
M: sindbis virus
N: beet western yellows virus (bwyv (aka beet western yellows virus))
O: sugar beet yellows virus (aka beet yellows virus)
P: bussuquara virus
Q: sac brood virus (aka sacbrood virus)
R: None of the above. | [R; K; K; C] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bchv; beet mild yellowing virus]
<Options>: A: becv (aka bovine coronavirus) (aka bovine coronavirus)
B: bovine circovirus
C: beet yellow stunt virus
D: bubo bubo herpesvirus
E: maize yellow mosaic virus
F: broad bean mottle virus
G: buhv-1 (aka bubaline alphaherpesvirus 1)
H: bovine herpesvirus 1 (aka bovine alphaherpesvirus 1)
I: beet mosaic virus
J: bmyv (aka beet mild yellowing virus) (aka beet mild yellowing virus)
K: None of the above. | [K; J] |
<Instruct>: Given the context '[SbDV], Bean leafroll virus [BLRV], Beet chlorosis virus [BChV], Beet mild yellowing virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bchv; beet mild yellowing virus]
<Options>: A: bubo bubo herpesvirus
B: beet eastern yellows virus
C: bcv (aka bovine coronavirus) (aka bovine coronavirus)
D: broad bean mottle virus
E: butterbur mosaic virus (butmv) (aka butterbur mosaic virus)
F: bmyv (aka beet mild yellowing virus) (aka beet mild yellowing virus)
G: buteo buteo herpesvirus
H: byv (aka beet yellows virus) (aka beet yellows virus)
I: butlers creek virus
J: domestic cat hepatitis b virus
K: None of the above. | [K; F] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bmyv; beet western yellows virus; bwyv; cereal yellow dwarf virus-rpv]
<Options>: A: cereal yellow dwarf virus-rpv (aka cereal yellow dwarf virus rpv)
B: brome mosaic virus (bmv (aka brome mosaic virus))
C: barley dwarf virus
D: beet yellow stunt virus
E: moriarty virus
F: cereal yellow dwarf virus - rps (aka cereal yellow dwarf virus rps)
G: bombyx mori latent virus
H: beet western yellows virus (isolate gb1)
I: beet western yellows virus (bwyv (aka beet western yellows virus))
J: bwamba virus (aka orthobunyavirus bwambaense)
K: bmyv (aka beet mild yellowing virus) (aka beet mild yellowing virus)
L: bovine polyomavirus bpyv (aka epsilonpolyomavirus bovis)
M: brassica yellows virus
N: bro virus
O: byv (aka beet yellows virus) (aka beet yellows virus)
P: rice dwarf virus rdv (aka rice dwarf virus)
Q: boteke virus
R: brambyvirus
S: potato rough dwarf virus
T: None of the above. | [K; I; I; A] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bmyv; beet western yellows virus; bwyv; cereal yellow dwarf virus-rpv]
<Options>: A: bovine polyomavirus bpyv (aka epsilonpolyomavirus bovis)
B: rice dwarf virus rdv (aka rice dwarf virus)
C: steenbok polyomavirus
D: potyvirus wisteriae
E: mandrill polyomavirus
F: cereal yellow dwarf virus - rps (aka cereal yellow dwarf virus rps)
G: potato rough dwarf virus
H: bmyv (aka beet mild yellowing virus) (aka beet mild yellowing virus)
I: moriarty virus
J: beet yellows virus (sugar beet yellows virus, sbyv) (aka beet yellows virus)
K: bwyv (aka beet western yellows virus) (aka beet western yellows virus)
L: beet pseudo-yellows virus (aka beet pseudoyellows virus)
M: wabat virus
N: bro virus
O: cereal yellow dwarf virus
P: brassica yellows virus
Q: barley yellow dwarf virus - rpv (aka cereal yellow dwarf virus rpv)
R: beet yellow stunt virus
S: mboke virus
T: None of the above. | [H; K; K; Q] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bmyv; beet western yellows virus; bwyv; cereal yellow dwarf virus-rpv]
<Options>: A: barley yellow dwarf virus-rmv
B: mburo virus
C: bk polyomavirus (aka betapolyomavirus hominis)
D: bmyv (aka beet mild yellowing virus) (aka beet mild yellowing virus)
E: beet western yellow virus (aka beet western yellows virus)
F: mollyvirus
G: beejeyvirus
H: rice dwarf virus rdv (aka rice dwarf virus)
I: potato yellow blotch virus
J: bk virus (aka betapolyomavirus hominis)
K: potato yellow dwarf virus (potato yellow dwarf nucleorhabdovirus) (aka potato yellow dwarf virus)
L: steenbok polyomavirus
M: beet soil-borne virus (bsbv (aka beet soil-borne virus))
N: cereal yellow dwarf virus-rpv (aka cereal yellow dwarf virus rpv)
O: potyvirus wisteriae
P: beet chlorosis virus
Q: cereal yellow dwarf virus - rps (aka cereal yellow dwarf virus rps)
R: beet yellow stunt virus
S: boteke virus
T: None of the above. | [D; E; E; N] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bmyv; beet western yellows virus; bwyv; cereal yellow dwarf virus-rpv]
<Options>: A: beet mild yellowing virus (bmyv (aka beet mild yellowing virus))
B: beet western yellows virus (bwyv (aka beet western yellows virus))
C: beet western yellows st9 associated virus
D: cereal yellow dwarf virus
E: rice stripe necrosis virus
F: moriarty virus
G: bmv (aka brome mosaic virus) (aka brome mosaic virus)
H: tobacco yellow virus
I: steenbok polyomavirus
J: bk virus (aka betapolyomavirus hominis)
K: barley yellow dwarf virus rpv (aka cereal yellow dwarf virus rpv)
L: balleny virus
M: potato rough dwarf virus
N: sbyv (aka beet yellows virus) (aka beet yellows virus)
O: bro virus
P: brassica yellows virus
Q: potato yellow dwarf virus (potato yellow dwarf nucleorhabdovirus) (aka potato yellow dwarf virus)
R: brambyvirus
S: bmyv (aka beet mild yellowing virus) (aka beet mild yellowing virus)
T: None of the above. | [S; B; B; K] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cydv-rpv; cucurbit aphid-borne yellows virus]
<Options>: A: chrocavyrb virus
B: cydv-rpv (aka cereal yellow dwarf virus rpv)
C: cucurbit aphid-borne yellows virus (cabyv) (aka cucurbit aphid-borne yellows virus)
D: tobacco yellow crinkle virus
E: chrocagyrd virus
F: turnip yellows virus
G: cucumber aphid-borne yellows virus
H: spinach yellows virus
I: chrocaderb virus
J: chrocadynt virus
K: None of the above. | [B; C] |
<Instruct>: Given the context '[BMYV], Beet western yellows virus [BWYV], Cereal yellow dwarf virus-RPV [CYDV-RPV], Cucurbit aphid-borne yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cydv-rpv; cucurbit aphid-borne yellows virus]
<Options>: A: chrocacyrn virus
B: cucumber aphid-borne yellows virus
C: cabyv (aka cucurbit aphid-borne yellows virus)
D: chrocavyrb virus
E: cpdnv (aka culex pipiens densovirus)
F: cydv-rpv (aka cereal yellow dwarf virus rpv)
G: citrus yellow mottle virus
H: cucurbit chlorotic virus
I: cucurbit chlorotic yellows virus
J: chrocogyrd virus
K: None of the above. | [F; C] |
<Instruct>: Given the context '[CABYV], Potato leafroll virus [PLRV] and Turnip yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cabyv; potato leafroll virus; plrv; turnip yellows virus]
<Options>: A: rabbit picorna-like virus
B: chrocabarb virus
C: pan troglodytes lymphocryptovirus
D: turnip crinkle virus (tcv (aka turnip crinkle virus))
E: bean leafroll virus (blrv (aka bean leafroll virus))
F: pea yellow stunt virus
G: berrek virus
H: turnip leaf roll virus
I: turnip yellows virus
J: cabyv (aka cucurbit aphid-borne yellows virus)
K: cotton leafroll virus (cotton leaf roll virus) (aka cotton leafroll virus)
L: pliego virus
M: potato rugose stunting virus
N: potato leafroll virus (plrv (aka potato leafroll virus))
O: turnip curly top virus
P: chrocaberb virus
Q: peony leafroll associated virus (aka peony leafroll-associated virus)
R: cucurbit potyvirus
S: potato leafroll virus (strain 1)
T: None of the above. | [J; N; N; I] |
<Instruct>: Given the context '[CABYV], Potato leafroll virus [PLRV] and Turnip yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cabyv; potato leafroll virus; plrv; turnip yellows virus]
<Options>: A: berberis potyvirus
B: plpav (aka peach leaf pitting-associated virus)
C: cotton leaf roll virus (aka cotton leafroll virus)
D: rabbit picorna-like virus
E: potyvirus carotae
F: potato yellow vein virus
G: potato latent virus
H: turnip rosette virus
I: wheat yellow stripe virus
J: potato leafroll virus (strain 1)
K: turnip yellows virus
L: wheat yellow dwarf virus
M: potyvirus
N: cotton leafroll virus (cotton leaf roll virus) (aka cotton leafroll virus)
O: tobacco yellow crinkle virus
P: lymphoproliferative disease virus (lymphoproliferative disease virus of turkeys) (aka lymphoproliferative disease virus)
Q: canary polyomavirus (capyv) (aka canary polyomavirus)
R: cabyv (aka cucurbit aphid-borne yellows virus)
S: potato leafroll virus (plrv (aka potato leafroll virus))
T: None of the above. | [R; S; S; K] |
<Instruct>: Given the context '[CABYV], Potato leafroll virus [PLRV] and Turnip yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cabyv; potato leafroll virus; plrv; turnip yellows virus]
<Options>: A: potato yellow vein virus
B: berrek virus
C: turnip yellows virus
D: plrv1 (aka phomosis penoulivirus)
E: tomato infectious yellows virus
F: potato leaf-roll virus (aka potato leafroll virus)
G: pepper leafroll virus
H: cabirus
I: cucurbit aphid-borne yellows virus (cabyv) (aka cucurbit aphid-borne yellows virus)
J: turnip crinkle virus (tcv (aka turnip crinkle virus))
K: rabbit picorna-like virus
L: wheat yellows virus
M: brassica caulorapa potyvirus
N: potyvirus carotae
O: pan troglodytes lymphocryptovirus
P: wheat yellow dwarf virus
Q: grapevine line pattern virus
R: pennypacker partiti-like virus
S: potato rugose stunting virus
T: None of the above. | [I; F; F; C] |
<Instruct>: Given the context '[CABYV], Potato leafroll virus [PLRV] and Turnip yellows virus', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cabyv; potato leafroll virus; plrv; turnip yellows virus]
<Options>: A: pepper leafroll chlorosis virus
B: rabbit picorna-like virus
C: turnip curly top virus
D: potato yellowing virus
E: pennypacker partiti-like virus
F: potyvirus cepae
G: berberis potyvirus
H: potato leafroll virus (plrv (aka potato leafroll virus))
I: potyvirus cannae
J: leguminosae-associated picorna-like virus
K: cotton leaf roll virus (aka cotton leafroll virus)
L: turnip yellows virus
M: potato yellow vein virus
N: potato rugose stunting virus
O: potyvirus carotae
P: wheat yellow stripe virus
Q: cabyv (aka cucurbit aphid-borne yellows virus)
R: wheat yellows virus
S: pea yellow stunt virus
T: None of the above. | [Q; H; H; L] |
<Instruct>: Given the context '[TuYV].', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tuyv]
<Options>: A: triplejayvirus
B: tuskovirus
C: trichodysplasia spinulosa-associated polyomavirus (tspyv) (aka trichodysplasia spinulosa-associated polyomavirus)
D: tupaia rhabdovirus (aka tupaia virus)
E: potyvirus
F: None of the above. | [F] |
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