instruction stringlengths 209 946 | input stringlengths 96 1.45k | response stringlengths 3 12 |
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<Instruct>: Given the context 'Recently, genes coding for odorant receptors (ORs) OR6, OR14, OR15 and OR16 have been genetically associated with species-specific male response to female pheromone blends in Heliothis virescens (Hv) and Heliothis subflexa (Hs).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [heliothis virescens; hv; heliothis subflexa; hs]
<Options>: A: cache valley virus
B: hefer valley virus
C: heliothrips sylvanus
D: heliothis paradoxus (aka heliocheilus paradoxus)
E: temnoscheila virescens (temnochila virescens) (aka temnoscheila virescens)
F: heliothis acesias
G: hermosomastax
H: heliothis punctigera (aka helicoverpa punctigera)
I: halley virus
J: hippotragine herpesvirus 1 (aka hippotragine gammaherpesvirus 1)
K: trisetopsis virescens (helictotrichon virescens) (aka trisetopsis virescens)
L: heliothis subflexa (chloridea subflexa) (aka heliothis subflexa)
M: heliococcus
N: hsiungia
O: meenocixius virescens
P: heleobia umbiculata
Q: hidden valley virus
R: schismorhynchus
S: helcostizus
T: None of the above. | [T; T; L; L] |
<Instruct>: Given the context 'Recently, genes coding for odorant receptors (ORs) OR6, OR14, OR15 and OR16 have been genetically associated with species-specific male response to female pheromone blends in Heliothis virescens (Hv) and Heliothis subflexa (Hs).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [heliothis virescens; hv; heliothis subflexa; hs]
<Options>: A: hepialus virescens (aka aenetus virescens)
B: heliothis punctigera (aka helicoverpa punctigera)
C: hepatitis x virus (hxhv (aka hepatitis x virus))
D: heleobia magna
E: helicosporium virescens (aka chloridium virescens)
F: helophilus virgatus
G: heliothis subflexa (chloridea subflexa) (aka heliothis subflexa)
H: simorhynchotus
I: heliothis punctifera
J: hippotragine herpesvirus 1 (aka hippotragine gammaherpesvirus 1)
K: helcococcus bovis
L: heliothis virescens (helicoverpa virescens) (aka heliothis virescens)
M: viral haemorrhagic septicaemia virus (aka viral hemorrhagic septicemia virus)
N: swine (aka sus scrofa)
O: hsiungia
P: human hepatitis a virus (hhav (aka human hepatitis a virus))
Q: halley virus
R: helophilus fasciatus
S: hystrichis
T: meenocixius virescens
U: None of the above. | [L; L; G; G] |
<Instruct>: Given the context 'Recently, genes coding for odorant receptors (ORs) OR6, OR14, OR15 and OR16 have been genetically associated with species-specific male response to female pheromone blends in Heliothis virescens (Hv) and Heliothis subflexa (Hs).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [heliothis virescens; hv; heliothis subflexa; hs]
<Options>: A: sthughesia
B: heliothis paradoxus (aka heliocheilus paradoxus)
C: heliocheilus lupatus (heliothis lupatus) (aka heliocheilus lupatus)
D: heleobia stiphra
E: sotanostenochrus
F: hystrichis
G: vinhv (aka orthonairovirus australiaense)
H: helophilus virgatus
I: triptila virescens (tomopteryx virescens) (aka triptila virescens)
J: horsepox virus
K: horse circo-like virus (horse-circo-like virus) (aka horse circo-like virus)
L: heleobia profunda
M: hippotragine herpesvirus 1 (aka hippotragine gammaherpesvirus 1)
N: schinia siren (heliothis siren) (aka schinia siren)
O: sextius virescens
P: heliothis subflexa (chloridea subflexa) (aka heliothis subflexa)
Q: heliothis lupatus (aka heliocheilus lupatus)
R: hsenhsua
S: chloridea virescens (aka heliothis virescens)
T: hefer valley virus
U: None of the above. | [S; S; P; P] |
<Instruct>: Given the context 'The lack of higher expression of any of the receptor genes in H. subflexa antennae suggests that interspecific sequence differences, rather than gene regulation differences, underly the species-specific male response to pheromone components.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h. subflexa]
<Options>: A: heterodera graminis
B: hymenochaete subferruginea
C: chloridea subflexa (aka heliothis subflexa)
D: hymenoscyphus serotinus (helotium serotinum) (aka hymenoscyphus serotinus)
E: heleobia stiphra
F: None of the above. | [C] |
<Instruct>: Given the context 'Mutational analysis of the transmembrane helix 2-HAMP domain connection in the Escherichia coli aspartate chemoreceptor tar.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: entamoeba coli
B: escherichia coli c
C: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
D: bacillus coli (aka escherichia coli)
E: escherichia coli 97.1742
F: None of the above. | [D] |
<Instruct>: Given the context 'Mutational analysis of the transmembrane helix 2-HAMP domain connection in the Escherichia coli aspartate chemoreceptor tar.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [escherichia coli]
<Options>: A: entamoeba coli
B: escherichia coli c
C: escherichia coli 97.1742
D: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
E: None of the above. | [E] |
<Instruct>: Given the context 'The PRP8 intein, the most widespread among fungi, occurs in important pathogens such as Histoplasma capsulatum and Paracoccidioides brasiliensis, from the Ajellomycetaceae family.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [histoplasma capsulatum; paracoccidioides brasiliensis]
<Options>: A: histoplasma capsulatum var. capsulatum tmu
B: bezerromyces brasiliensis
C: histoplasma capsulatum var. capsulatum (histoplasma capsulatum var. capsulatum darling, 1906) (aka histoplasma capsulatum var. capsulatum)
D: histoplasma
E: trichomycterus brasiliensis
F: histoplasma duboisii (aka histoplasma capsulatum var. duboisii)
G: planctomyces brasiliensis (aka rubinisphaera brasiliensis)
H: malassezia brasiliensis
I: zymonema brasiliensis (aka paracoccidioides brasiliensis)
J: emmonsiella capsulata (aka histoplasma capsulatum)
K: None of the above. | [J; I] |
<Instruct>: Given the context 'The PRP8 intein, the most widespread among fungi, occurs in important pathogens such as Histoplasma capsulatum and Paracoccidioides brasiliensis, from the Ajellomycetaceae family.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [histoplasma capsulatum; paracoccidioides brasiliensis]
<Options>: A: histoplasma capsulatum var. farciminosum (cryptococcus farciminosus) (aka histoplasma capsulatum var. farciminosum)
B: pseudophallus brasiliensis
C: pirozynskiomyces brasiliensis
D: histophilus
E: zymonema brasiliensis (aka paracoccidioides brasiliensis)
F: nigrospora brasiliensis
G: discomyces brasiliensis (aka nocardia brasiliensis)
H: cryptococcus capsulatus (aka histoplasma capsulatum)
I: mortierella histoplasmatoides
J: histoplasma capsulatum var. capsulatum (histoplasma capsulatum var. capsulatum darling, 1906) (aka histoplasma capsulatum var. capsulatum)
K: None of the above. | [H; E] |
<Instruct>: Given the context 'Herein, we describe the bi-functional PRP8 intein in two other Ajellomycetacean pathogens, Blastomyces dermatitidis and Emmonsia parva.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [blastomyces dermatitidis; emmonsia parva]
<Options>: A: blastomyces
B: imleria parva
C: massaria parva
D: debaryomyces neoformans (aka cryptococcus neoformans)
E: emmonsia parva (aka blastomyces parvus)
F: macrocera parva
G: discomyces bovis (aka actinomyces bovis)
H: ajellomyces dermatitidis (aka blastomyces dermatitidis)
I: amblyomma parvum
J: blastomyces dermatitidis atcc18187 (aka blastomyces dermatitidis atcc 18187)
K: None of the above. | [H; E] |
<Instruct>: Given the context 'Herein, we describe the bi-functional PRP8 intein in two other Ajellomycetacean pathogens, Blastomyces dermatitidis and Emmonsia parva.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [blastomyces dermatitidis; emmonsia parva]
<Options>: A: blastomyces
B: blastomyces dermatitidis atcc18187 (aka blastomyces dermatitidis atcc 18187)
C: blastomycoides dermatitidis (aka blastomyces dermatitidis)
D: macropodia parva
E: emmonsia parva (aka blastomyces parvus)
F: exophiala dermatitidis (hormiscium dermatitidis) (aka exophiala dermatitidis)
G: macrocera parva
H: xerochrysium dermatitidis (glenosporella dermatitidis) (aka xerochrysium dermatitidis)
I: marsipometra parva
J: ithomia parva (aka pteronymia parva)
K: None of the above. | [C; E] |
<Instruct>: Given the context 'The splicing activity of the PRP8 intein from the B. dermatitidis, E. parva and P. brasiliensis species complex was demonstrated in a non-native protein context in Escherichia coli.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. dermatitidis; e. parva; p. brasiliensis species complex; escherichia coli]
<Options>: A: hormiscium dermatitidis (aka exophiala dermatitidis)
B: euroleon parvus
C: paracoccidioides brasiliensis (zymonema brasiliensis) (aka paracoccidioides brasiliensis)
D: blastomyces dermatitidis (blastomycoides dermatitidis) (aka blastomyces dermatitidis)
E: e. coli (aka escherichia coli)
F: protalebrella brasiliensis
G: bacillus bronchisepticus (aka bordetella bronchiseptica)
H: escherichia coli nissle 1917 (escherichia coli strain nissle 1917) (aka escherichia coli nissle 1917)
I: escherichia coli 99.1762
J: equilabium parvum (plectranthus parvus) (aka equilabium parvum)
K: eumunida parva
L: dermatobia hominis (human botfly) (aka dermatobia hominis)
M: 'escherichia faecalis' (aka escherichia faecalis)
N: discomyces bovis (aka actinomyces bovis)
O: enispa parva (microeschus parva) (aka enispa parva)
P: escherichia coli 9.1796
Q: eois parva
R: mycobacterium brasiliensis ('mycobacterium brasiliensis') (aka mycobacterium brasiliensis)
S: pirozynskiomyces brasiliensis
T: aspergillus brasiliensis
U: None of the above. | [D; U; C; E] |
<Instruct>: Given the context 'The splicing activity of the PRP8 intein from the B. dermatitidis, E. parva and P. brasiliensis species complex was demonstrated in a non-native protein context in Escherichia coli.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. dermatitidis; e. parva; p. brasiliensis species complex; escherichia coli]
<Options>: A: erioptera parva
B: bacillus coli (aka escherichia coli)
C: pseudophallus brasiliensis
D: dermatobia hominis (human botfly) (aka dermatobia hominis)
E: pycnacronema brasiliensis
F: bartonella bovis
G: eriocaulon parvum
H: entamoeba coli
I: escherichia coli c
J: brachybacterium epidermidis
K: enterobacter aerogenes (aka klebsiella aerogenes)
L: escherichia coli 9.1796
M: enchytronia parva
N: discomyces bovis (aka actinomyces bovis)
O: anaeramoeba parva
P: paracoccidioides brasiliensis (zymonema brasiliensis) (aka paracoccidioides brasiliensis)
Q: equilabium parvum (plectranthus parvus) (aka equilabium parvum)
R: rubinisphaera brasiliensis (planctomyces brasiliensis) (aka rubinisphaera brasiliensis)
S: ajellomyces dermatitidis (aka blastomyces dermatitidis)
T: aspergillus brasiliensis
U: None of the above. | [S; U; P; B] |
<Instruct>: Given the context 'The splicing activity of the PRP8 intein from the B. dermatitidis, E. parva and P. brasiliensis species complex was demonstrated in a non-native protein context in Escherichia coli.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. dermatitidis; e. parva; p. brasiliensis species complex; escherichia coli]
<Options>: A: enispa parva (microeschus parva) (aka enispa parva)
B: hormiscium dermatitidis (aka exophiala dermatitidis)
C: discomyces bovis (aka actinomyces bovis)
D: egle parva
E: vibrio coli (aka campylobacter coli)
F: paracoccidioides
G: euroleon parvus
H: bartonella bovis
I: bacillus coli (aka escherichia coli)
J: anaeramoeba parva
K: escherichia
L: 'escherichia faecalis' (aka escherichia faecalis)
M: blastomyces dermatitidis (blastomycoides dermatitidis) (aka blastomyces dermatitidis)
N: paractinoplanes brasiliensis (actinoplanes brasiliensis) (aka paractinoplanes brasiliensis)
O: theileria parva
P: mycobacterium brasiliensis ('mycobacterium brasiliensis') (aka mycobacterium brasiliensis)
Q: escherichia coli 99.1762
R: pseudophallus brasiliensis
S: zymonema brasiliensis (aka paracoccidioides brasiliensis)
T: dermatophilus congolensis ("streptothrix bovis" snijders and jansen 1955) (aka dermatophilus congolensis)
U: None of the above. | [M; U; S; I] |
<Instruct>: Given the context 'The splicing activity of the PRP8 intein from the B. dermatitidis, E. parva and P. brasiliensis species complex was demonstrated in a non-native protein context in Escherichia coli.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. dermatitidis; e. parva; p. brasiliensis species complex; escherichia coli]
<Options>: A: dermatophilus congolensis ("streptothrix bovis" snijders and jansen 1955) (aka dermatophilus congolensis)
B: hormiscium dermatitidis (aka exophiala dermatitidis)
C: euroleon parvus
D: egle parva
E: bacillus coli (aka escherichia coli)
F: bartonella bovis
G: discomyces bovis (aka actinomyces bovis)
H: escherichia coli 99.1762
I: theileria parva
J: pseudophallus brasiliensis
K: mycobacterium brasiliensis ('mycobacterium brasiliensis') (aka mycobacterium brasiliensis)
L: blastomyces dermatitidis (blastomycoides dermatitidis) (aka blastomyces dermatitidis)
M: vibrio coli (aka campylobacter coli)
N: paracoccidioides
O: paractinoplanes brasiliensis (actinoplanes brasiliensis) (aka paractinoplanes brasiliensis)
P: anaeramoeba parva
Q: enispa parva (microeschus parva) (aka enispa parva)
R: escherichia
S: 'escherichia faecalis' (aka escherichia faecalis)
T: None of the above. | [L; T; T; E] |
<Instruct>: Given the context 'The splicing activity of the PRP8 intein from the B. dermatitidis, E. parva and P. brasiliensis species complex was demonstrated in a non-native protein context in Escherichia coli.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. dermatitidis; e. parva; p. brasiliensis species complex; escherichia coli]
<Options>: A: bacillus insidiosus (aka erysipelothrix rhusiopathiae)
B: erpobdella parva
C: borrelomyces gallinarum (aka mycoplasmopsis gallinarum)
D: "streptothrix bovis" snijders and jansen 1955 (aka dermatophilus congolensis)
E: theileria parva
F: escherichia
G: enispa parva (microeschus parva) (aka enispa parva)
H: 'escherichia faecalis' (aka escherichia faecalis)
I: planctomyces brasiliensis (aka rubinisphaera brasiliensis)
J: brucella
K: paracoccidioides brasiliensis (zymonema brasiliensis) (aka paracoccidioides brasiliensis)
L: escherichia coli 99.1793
M: mycobacterium brasiliensis ('mycobacterium brasiliensis') (aka mycobacterium brasiliensis)
N: pleurotus brasiliensis (aka ripartitella brasiliensis)
O: eimeria parva
P: blastomycoides dermatitidis (aka blastomyces dermatitidis)
Q: escherichia/shigella coli (aka escherichia coli)
R: toxolasma parvus (aka toxolasma parvum)
S: entamoeba coli
T: pycnacronema brasiliensis
U: None of the above. | [P; U; K; Q] |
<Instruct>: Given the context 'Involvement of a helix-loop-helix transcription factor CHC-1 in CO(2)-mediated conidiation suppression in Neurospora crassa.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [neurospora crassa]
<Options>: A: neurospora terricola fgsc 1889
B: chrysonilia crassa (aka neurospora crassa)
C: pseudozyma crassa (aka triodiomyces crassus)
D: neocosmospora crassa (aka fusarium crassum)
E: neurospora uniporata
F: None of the above. | [B] |
<Instruct>: Given the context 'In this study, by screening a set of knock-out mutants corresponding to 103 transcription factor encoding genes in Neurospora crassa, a mutant was found to produce abundant conidia in race tubes in which conidiation in the wild-type strain was suppressed.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [neurospora crassa]
<Options>: A: neurospora stellata
B: neurospora crassa (chrysonilia crassa) (aka neurospora crassa)
C: sarcosphaera crassa (peziza crassa) (aka sarcosphaera crassa)
D: columnea crassa
E: neurospora nigeriensis
F: None of the above. | [B] |
<Instruct>: Given the context 'Among them, fluffy and ada-6, two transcription factor genes that positively regulate conidiation in N. crassa, and rca-1, whose homolog flbD in Aspergillus nidulans is essential for conidiation, were upregulated in the chc-1 deletion mutant.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [n. crassa; aspergillus nidulans]
<Options>: A: argis crassa (nectocrangon crassa) (aka argis crassa)
B: crassa (aka crassa <moths>)
C: chrysonilia crassa (aka neurospora crassa)
D: aspergillus cerealis
E: tryella crassa
F: neosartorya fumigata (aka aspergillus fumigatus)
G: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
H: aspergillus nidulellus (aka aspergillus nidulans)
I: aspergillus agricola
J: babingtonia crassa (aka sannantha crassa)
K: None of the above. | [C; H] |
<Instruct>: Given the context 'Among them, fluffy and ada-6, two transcription factor genes that positively regulate conidiation in N. crassa, and rca-1, whose homolog flbD in Aspergillus nidulans is essential for conidiation, were upregulated in the chc-1 deletion mutant.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [n. crassa; aspergillus nidulans]
<Options>: A: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
B: aspergillus nidulellus (aka aspergillus nidulans)
C: aspergillus domesticus
D: aspergillus avenaceus
E: neocynthus crassus
F: nansenia crassa
G: chrysonilia crassa (aka neurospora crassa)
H: tabernaemontana crassa
I: napothera crassa (aka gypsophila crassa)
J: nassella nidulans
K: None of the above. | [G; B] |
<Instruct>: Given the context 'Among them, fluffy and ada-6, two transcription factor genes that positively regulate conidiation in N. crassa, and rca-1, whose homolog flbD in Aspergillus nidulans is essential for conidiation, were upregulated in the chc-1 deletion mutant.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [n. crassa; aspergillus nidulans]
<Options>: A: tabernaemontana crassa
B: nansenia crassa
C: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
D: aspergillus nidulellus (aka aspergillus nidulans)
E: nassella nidulans
F: aspergillus domesticus
G: napothera crassa (aka gypsophila crassa)
H: aspergillus avenaceus
I: neocynthus crassus
J: None of the above. | [J; D] |
<Instruct>: Given the context 'An analysis of the time-dependent genetic response to the death-inducer staurosporine was performed in Neurospora crassa by transcriptional profiling.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [neurospora crassa]
<Options>: A: neurospora crassa (chrysonilia crassa) (aka neurospora crassa)
B: neocosmospora crassa (aka fusarium crassum)
C: neurospora pannonica
D: neurospora cerealis (gelasinospora cerealis) (aka neurospora cerealis)
E: neurospora uniporata
F: None of the above. | [A] |
<Instruct>: Given the context 'The combination of inhibitors of ABC transporters or of potassium channels with staurosporine leads to an enhanced activity against N. crassa and pathogenic fungi paving the way to the development of more potent and specific antifungals.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [n. crassa]
<Options>: A: nicotiana benthamiana
B: nansenia crassa
C: neurospora crassa (chrysonilia crassa) (aka neurospora crassa)
D: noronhia crassiramosa
E: nitrosomonas nitrosa
F: None of the above. | [C] |
<Instruct>: Given the context 'Differential PbP27 expression in the yeast and mycelial forms of the Paracoccidioides brasiliensis species complex.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [paracoccidioides brasiliensis]
<Options>: A: pirozynskiomyces brasiliensis
B: paracalanus brasiliensis
C: rubinisphaera brasiliensis (planctomyces brasiliensis) (aka rubinisphaera brasiliensis)
D: oospora brasiliensis (aka nocardia brasiliensis)
E: paracoccidioides brasiliensis (zymonema brasiliensis) (aka paracoccidioides brasiliensis)
F: None of the above. | [E] |
<Instruct>: Given the context 'p27 is an antigenic protein produced by Paracoccidioides brasiliensis, the etiologic agent of paracoccidioidomycosis (PCM).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [paracoccidioides brasiliensis]
<Options>: A: pseudophallus brasiliensis
B: podospora brasiliensis
C: nigrospora brasiliensis
D: rubinisphaera brasiliensis (planctomyces brasiliensis) (aka rubinisphaera brasiliensis)
E: zymonema brasiliensis (aka paracoccidioides brasiliensis)
F: None of the above. | [E] |
<Instruct>: Given the context 'In order to determine if there was a differential expression pattern between morphological states and among isolates, we also evaluated PbP27 expression, at transcriptional and translational levels, in mycelia and yeast cultures in 14 isolates belonging to the P. brasiliensis species complex (S1, PS2, PS3, and "Pb01-like", proposed to be named Paracoccidioides lutzii) by two techniques, real time RT-PCR (RT-qPCR) and protein dot blot.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. brasiliensis species complex; paracoccidioides lutzii]
<Options>: A: zymonema brasiliensis (aka paracoccidioides brasiliensis)
B: pseudagapostemon brasiliensis (pseudagapostemon braziliensis) (aka pseudagapostemon brasiliensis)
C: paracoccus liaowanqingii
D: actinomyces brasiliensis (aka nocardia brasiliensis)
E: paracoccidioides sp. mt-2011 (aka paracoccidioides lutzii)
F: rubinisphaera brasiliensis (planctomyces brasiliensis) (aka rubinisphaera brasiliensis)
G: panstrongylus lutzi
H: paracoccidioides brasiliensis (zymonema brasiliensis) (aka paracoccidioides brasiliensis)
I: peziza luticola
J: mycobacterium brasiliensis ('mycobacterium brasiliensis') (aka mycobacterium brasiliensis)
K: None of the above. | [A; E] |
<Instruct>: Given the context 'In order to determine if there was a differential expression pattern between morphological states and among isolates, we also evaluated PbP27 expression, at transcriptional and translational levels, in mycelia and yeast cultures in 14 isolates belonging to the P. brasiliensis species complex (S1, PS2, PS3, and "Pb01-like", proposed to be named Paracoccidioides lutzii) by two techniques, real time RT-PCR (RT-qPCR) and protein dot blot.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. brasiliensis species complex; paracoccidioides lutzii]
<Options>: A: discomyces brasiliensis (aka nocardia brasiliensis)
B: pavonia luetzelburgii
C: aspergillus brasiliensis
D: paracoccus lutimaris
E: paracoccidioides sp. mt-2011 (aka paracoccidioides lutzii)
F: mutisia lutzii
G: parachlorella beijerinckii
H: paractinoplanes brasiliensis (actinoplanes brasiliensis) (aka paractinoplanes brasiliensis)
I: pseudophallus brasiliensis
J: zymonema brasiliensis (aka paracoccidioides brasiliensis)
K: None of the above. | [J; E] |
<Instruct>: Given the context 'Regulation of virulence factors, carbon utilization and virulence by SNF1 in Cryptococcus neoformans JEC21 and divergent actions of SNF1 between cryptococcal strains.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cryptococcus neoformans jec21]
<Options>: A: cryptococcus neoformans bt18
B: cryptococcus neoformans var. gattii (aka cryptococcus gattii)
C: cryptococcus neoformans jec21 (aka cryptococcus neoformans var. neoformans jec21)
D: cryptococcus neoformans bt99
E: torulopsis neoformans (aka cryptococcus neoformans)
F: None of the above. | [E] |
<Instruct>: Given the context 'We describe here the functions of a Snf1/AMPK homolog in the human pathogenic yeast Cryptococcus neoformans, strain JEC21.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [jec21]
<Options>: A: jedda
B: encephalitozoon cuniculi ec1
C: jessica
D: sheitanok
E: jembrana disease virus
F: None of the above. | [F] |
<Instruct>: Given the context 'We found that JEC21 SNF1 is a key regulator for the biosynthesis of the major virulence factors, stress resistance and alternative carbon source utilization.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [jec21]
<Options>: A: hea choui
B: japanese eel endothelial cells-infecting virus (eel polyomavirus) (aka japanese eel endothelial cells-infecting virus)
C: jemadia
D: jedda
E: jeana
F: None of the above. | [F] |
<Instruct>: Given the context 'Disruption of JEC21 SNF1 results in defects of laccase activity and capsule production, sensitivity to cation stress.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [jec21]
<Options>: A: helcococcus sueciensis
B: jefea
C: jeana
D: jemadia
E: jedda
F: None of the above. | [F] |
<Instruct>: Given the context 'Especially, we found that JEC21 SNF1 is essential for growth at elevated temperature and for thermotolerance.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [jec21]
<Options>: A: jeotgalicoccus saudimassiliensis
B: jedda
C: jemadia
D: sheitanok
E: jemadia ovid (jemadia hewitsonii ovid) (aka jemadia ovid)
F: None of the above. | [F] |
<Instruct>: Given the context 'Furthermore, we observed a functional divergence between JEC21 SNF1 and its equivalent from serotype A strain H99.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h99]
<Options>: A: h2n9 subtype
B: h9n2 (aka h9n2 subtype) (aka h9n2 subtype)
C: yeast isolate h-1009
D: h9n4 subtype
E: h16n9 subtype
F: None of the above. | [F] |
<Instruct>: Given the context 'A high temperature is needed for H99 SNF1 to function in stress response and carbon source preference, but not for the JEC21 SNF1.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h99; jec21]
<Options>: A: chone
B: h9n8 subtype
C: encephalitozoon cuniculi ec1
D: jedda
E: h6n9 subtype
F: jembrana disease virus
G: jeana
H: h11n9 subtype
I: h12n9 subtype
J: human rhinovirus nh3629
K: None of the above. | [K; K] |
<Instruct>: Given the context 'A high temperature is needed for H99 SNF1 to function in stress response and carbon source preference, but not for the JEC21 SNF1.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [h99; jec21]
<Options>: A: jeana
B: h11n9 subtype
C: h9n1 subtype
D: human rhinovirus nh3629
E: h9n3 subtype
F: sheitanok
G: jembrana disease virus
H: human rhinovirus r89
I: jedda
J: helcococcus sueciensis
K: None of the above. | [K; K] |
<Instruct>: Given the context 'Our results confirmed a critical role of JEC21 SNF1 in regulation of stress response and virulence.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [jec21]
<Options>: A: encephalitozoon cuniculi ec2
B: jeilongvirus comorosense
C: jeongeuplla avenae (aka jeongeupella avenae)
D: jessica
E: sheitanok
F: None of the above. | [F] |
<Instruct>: Given the context 'Diversification and evolution of the avirulence gene AVR-Pita1 in field isolates of Magnaporthe oryzae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [magnaporthe oryzae]
<Options>: A: paraphaeosphaeria oryzae
B: pestalotiopsis oryzae
C: pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002) (aka pyricularia oryzae)
D: hannaella oryzae (bullera oryzae) (aka hannaella oryzae)
E: magnaporthiopsis rhizophila (magnaporthe rhizophila) (aka magnaporthiopsis rhizophila)
F: None of the above. | [C] |
<Instruct>: Given the context 'Diversification and evolution of the avirulence gene AVR-Pita1 in field isolates of Magnaporthe oryzae.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [magnaporthe oryzae]
<Options>: A: magnaporthiopsis rhizophila (magnaporthe rhizophila) (aka magnaporthiopsis rhizophila)
B: paraphaeosphaeria oryzae
C: hannaella oryzae (bullera oryzae) (aka hannaella oryzae)
D: pestalotiopsis oryzae
E: None of the above. | [E] |
<Instruct>: Given the context 'Rice blast disease is the single most destructive plant disease that threatens stable rice production worldwide.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rice]
<Options>: A: rice (aka oryza sativa) (aka oryza sativa)
B: indian rice (aka oryza sativa indica group)
C: australian wild rice (aka oryza meridionalis)
D: african wild rice (aka oryza barthii)
E: ricegrass (aka oryzopsis)
F: None of the above. | [A] |
<Instruct>: Given the context 'Here we report the molecular mechanisms of diversification and the instability of the avirulence gene AVR-Pita1 in field strains of Magnaporthe oryzae interacting with the host resistance gene Pi-ta and triggering race-specific resistance.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [magnaporthe oryzae]
<Options>: A: paraphaeosphaeria oryzae
B: magnaporthe salvinii (aka nakataea oryzae)
C: monotospora oryzae (aka nigrospora oryzae)
D: pyricularia oryzae (magnaporthe oryzae b.c. couch, 2002) (aka pyricularia oryzae)
E: aspergillus oryzae (aspergillus oryzae (ahlb.) cohn, 1884) (aka aspergillus oryzae)
F: None of the above. | [D] |
<Instruct>: Given the context 'Cryptogein, a fungal elicitor, remodels the phenylpropanoid metabolism of tobacco cell suspension cultures in a calcium-dependent manner.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tobacco]
<Options>: A: common tobacco (aka nicotiana tabacum)
B: nicotiana benthamiana
C: glaucous tobacco (aka nicotiana glauca)
D: nicotiana sylvestris (wood tobacco) (aka nicotiana sylvestris)
E: acuminate tobacco (aka nicotiana acuminata)
F: None of the above. | [A] |
<Instruct>: Given the context 'To understand these relationships better, we challenged tobacco BY-2 cells with cryptogein and evaluated how calcium transients (monitored through the calcium sensor aequorin) impact (1) transcript levels of phenylpropanoid genes (assessed by RT-qPCR); and (2) derived-phenolic compounds (analysed by mass spectrometry).', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [tobacco]
<Options>: A: wild tobacco (aka nicotiana rustica)
B: nicotiana benthamiana
C: nicotiana occidentalis
D: nicotiana glauca (glaucous tobacco) (aka nicotiana glauca)
E: common tobacco (aka nicotiana tabacum)
F: None of the above. | [E] |
<Instruct>: Given the context 'This development has increased the risk of transmission of infections from wildlife to human beings and livestock.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: macrobiotus sapiens
B: human (aka homo sapiens)
C: glossus humanus (cardium humanum) (aka glossus humanus)
D: carcharhinus humani
E: gymnopleurus humanus
F: None of the above. | [B] |
<Instruct>: Given the context 'We isolated a Beta-thymosin gene in Helicoverpa armigera.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [helicoverpa armigera]
<Options>: A: cotton bollworm (aka helicoverpa armigera)
B: helicoverpa afra (aka helicoverpa assulta)
C: heliconia vellerigera
D: heliothis zea (aka helicoverpa zea)
E: helicoverpa armigera granulovirus
F: None of the above. | [A] |
<Instruct>: Given the context 'The large subunit of human ribonucleotide reductase, RRM1, is involved in the regulation of cell proliferation, cell migration, tumour and metastasis development, and the synthesis of deoxyribonucleotides for DNA synthesis.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [human]
<Options>: A: human (aka homo sapiens)
B: macrobiotus sapiens
C: neanderthal man (aka homo sapiens neanderthalensis)
D: hominidae (great apes) (aka hominidae)
E: glossus humanus (cardium humanum) (aka glossus humanus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Improved accuracy of the transcriptional profiling method of age grading in Aedes aegypti mosquitoes under laboratory and semi-field cage conditions and in the presence of Wolbachia infection.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aedes aegypti mosquitoes]
<Options>: A: aedes aegypti (aedes (stegomyia) aegypti) (aka aedes aegypti)
B: aedes ochraceus (culex ochraceus) (aka aedes ochraceus)
C: culex niveus (aka aedes niveus)
D: aedes aegypti queenslandensis (aka aedes aegypti aegypti)
E: culex alboannulatus (aka aedes alboannulatus)
F: None of the above. | [A] |
<Instruct>: Given the context 'Transcriptional profiling is an effective method of predicting age in the mosquito Aedes aegypti in the laboratory, however, its effectiveness is limited to younger mosquitoes.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aedes aegypti]
<Options>: A: aedes rossicus
B: culex atropalpus (aka aedes atropalpus)
C: stegomyia aegypti (aka aedes aegypti)
D: culex niveus (aka aedes niveus)
E: aedes flavopictus
F: None of the above. | [C] |
<Instruct>: Given the context 'In association with the development of symbiont-based control strategies for Ae. aegypti, we also tested the model's accuracy for Wolbachia-infected mosquitoes and found no decline in performance.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ae. aegypti]
<Options>: A: culex atropalpus (aka aedes atropalpus)
B: culex aegypti (aka aedes aegypti)
C: aedes flavopictus
D: culex ochraceus (aka aedes ochraceus)
E: culex vittatus (aka aedes vittatus)
F: None of the above. | [B] |
<Instruct>: Given the context 'In association with the development of symbiont-based control strategies for Ae. aegypti, we also tested the model's accuracy for Wolbachia-infected mosquitoes and found no decline in performance.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ae. aegypti]
<Options>: A: culex vittatus (aka aedes vittatus)
B: culex atropalpus (aka aedes atropalpus)
C: culex ochraceus (aka aedes ochraceus)
D: aedes flavopictus
E: None of the above. | [E] |
<Instruct>: Given the context 'Our findings suggest that the new model is a robust and powerful tool for age determination in Australian Ae. aegypti populations.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [ae. aegypti]
<Options>: A: culex vittatus (aka aedes vittatus)
B: culex ochraceus (aka aedes ochraceus)
C: aedes malayi (aka culex malayi)
D: culex aegypti (aka aedes aegypti)
E: culex niveus (aka aedes niveus)
F: None of the above. | [D] |
<Instruct>: Given the context 'Different root orders of 4-year-old Citrus volkameriana trees were analysed with respect to root morphology and water flux.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [citrus volkameriana]
<Options>: A: citrus myrtifolia
B: citrus tankan (citrus reticulata 'tankan') (aka citrus tankan)
C: citrus macrosperma
D: citrus glauca (australian desert-lime) (aka citrus glauca)
E: citrus volkameriana
F: None of the above. | [E] |
<Instruct>: Given the context 'Characterization of the Aspergillus nidulans biotin biosynthetic gene cluster and use of the bioDA gene as a new transformation marker.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus nidulans]
<Options>: A: aspergillus cerealis
B: aspergillus nidulellus (aka aspergillus nidulans)
C: aspergillus neoellipticus (aka aspergillus fumigatus)
D: aspergillus lanosus
E: aspergillus domesticus
F: None of the above. | [B] |
<Instruct>: Given the context 'The genes involved in the biosynthesis of biotin were identified in the hyphal fungus Aspergillus nidulans through homology searches and complementation of Escherichia coli biotin-auxotrophic mutants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus nidulans; escherichia coli]
<Options>: A: entamoeba coli
B: aspergillus tritici (aka aspergillus neotritici)
C: escherichia coli nissle 1917 (escherichia coli strain nissle 1917) (aka escherichia coli nissle 1917)
D: aspergillus agricola
E: aspergillus aureus
F: escherichia faecalis ('escherichia faecalis') (aka escherichia faecalis)
G: escherichia
H: aspergillus cerealis
I: bacterium coli (aka escherichia coli)
J: aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884) (aka aspergillus nidulans)
K: None of the above. | [J; I] |
<Instruct>: Given the context 'The genes involved in the biosynthesis of biotin were identified in the hyphal fungus Aspergillus nidulans through homology searches and complementation of Escherichia coli biotin-auxotrophic mutants.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [aspergillus nidulans; escherichia coli]
<Options>: A: escherichia coli 99.1762
B: aspergillus domesticus
C: aspergillus aureolus (neosartorya aureola) (aka aspergillus aureolus)
D: bacterium coli commune (aka escherichia coli)
E: escherichia coli 9.1796
F: escherichia
G: escherichia freundii (aka citrobacter freundii)
H: aphanothece nidulans
I: aspergillus nidulans (eidam) g. winter, 1884 (aka aspergillus nidulans)
J: aspergillus lanosus
K: None of the above. | [I; D] |
<Instruct>: Given the context 'Whereas the 7,8-diaminopelargonic acid synthase and dethiobiotin synthetase are encoded by distinct genes in bacteria and the yeast Saccharomyces cerevisiae, both activities are performed in A. nidulans by a single enzyme, encoded by the bifunctional gene bioDA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast; saccharomyces cerevisiae; a. nidulans]
<Options>: A: aspergillus fumigatus fresen., 1863 (aka aspergillus fumigatus)
B: saccharomyces rouxii (aka zygosaccharomyces rouxii)
C: saccharomyces drosophilarum (aka kluyveromyces lactis)
D: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
E: aspergillus cerealis
F: aspergillus nidulans var. nidulans (emericella nidulans var. nidulans) (aka aspergillus nidulans var. nidulans)
G: saccharomyces globosus (aka saccharomyces uvarum)
H: saccharomyces paradoxus
I: saccharomyces hansenii (aka debaryomyces hansenii)
J: emericella nidulans (aka aspergillus nidulans)
K: saccharomyces pasteurianus (aka saccharomyces pastorianus)
L: saccharomycodes
M: mycoderma cerevisiae (aka saccharomyces cerevisiae)
N: saccharomyces fermentati (aka torulaspora delbrueckii)
O: None of the above. | [M; M; J] |
<Instruct>: Given the context 'Whereas the 7,8-diaminopelargonic acid synthase and dethiobiotin synthetase are encoded by distinct genes in bacteria and the yeast Saccharomyces cerevisiae, both activities are performed in A. nidulans by a single enzyme, encoded by the bifunctional gene bioDA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast; saccharomyces cerevisiae; a. nidulans]
<Options>: A: aspergillus fumigatus fresen., 1863 (aka aspergillus fumigatus)
B: saccharomyces hansenii (aka debaryomyces hansenii)
C: saccharomycodes
D: saccharomyces rouxii (aka zygosaccharomyces rouxii)
E: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
F: saccharomyces drosophilarum (aka kluyveromyces lactis)
G: saccharomyces fermentati (aka torulaspora delbrueckii)
H: aspergillus cerealis
I: saccharomyces globosus (aka saccharomyces uvarum)
J: emericella nidulans (aka aspergillus nidulans)
K: aspergillus nidulans var. nidulans (emericella nidulans var. nidulans) (aka aspergillus nidulans var. nidulans)
L: saccharomyces paradoxus
M: saccharomyces pasteurianus (aka saccharomyces pastorianus)
N: None of the above. | [N; N; J] |
<Instruct>: Given the context 'Whereas the 7,8-diaminopelargonic acid synthase and dethiobiotin synthetase are encoded by distinct genes in bacteria and the yeast Saccharomyces cerevisiae, both activities are performed in A. nidulans by a single enzyme, encoded by the bifunctional gene bioDA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast; saccharomyces cerevisiae; a. nidulans]
<Options>: A: saccharomyces cerevisiae (saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883) (aka saccharomyces cerevisiae)
B: saccharomyces ovalis (aka malassezia furfur)
C: saccharomyces fermentati (aka torulaspora delbrueckii)
D: aspergillus domesticus
E: aspergillus aureus
F: aspergillus cerealis
G: aspergillus agricola
H: aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884) (aka aspergillus nidulans)
I: saccharomyces rouxii (aka zygosaccharomyces rouxii)
J: saccharomyces globosus (aka saccharomyces uvarum)
K: saccharomyces marxianus (aka kluyveromyces marxianus)
L: saccharomyces albicans (aka candida albicans)
M: None of the above. | [A; A; H] |
<Instruct>: Given the context 'Whereas the 7,8-diaminopelargonic acid synthase and dethiobiotin synthetase are encoded by distinct genes in bacteria and the yeast Saccharomyces cerevisiae, both activities are performed in A. nidulans by a single enzyme, encoded by the bifunctional gene bioDA.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [yeast; saccharomyces cerevisiae; a. nidulans]
<Options>: A: saccharomyces pasteurianus (aka saccharomyces pastorianus)
B: aspergillus agricola
C: saccharomyces globosus (aka saccharomyces uvarum)
D: megasphaera cerevisiae
E: saccharomyces albicans (aka candida albicans)
F: aspergillus avenaceus
G: aspergillus nidulellus (aka aspergillus nidulans)
H: saccharomyces marxianus (aka kluyveromyces marxianus)
I: saccharomyces paradoxus
J: aspergillus aureolus (neosartorya aureola) (aka aspergillus aureolus)
K: saccharomyces cerevisiae (desm.) meyen ex e.c. hansen, 1883 (aka saccharomyces cerevisiae)
L: saccharomyces fermentati (aka torulaspora delbrueckii)
M: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
N: saccharomyces hansenii (aka debaryomyces hansenii)
O: None of the above. | [K; K; G] |
<Instruct>: Given the context 'The A. nidulans auxotrophic mutants biA1, biA2 and biA3 were all found to have mutations in the 7,8-diaminopelargonic acid synthase domain of the bioDA gene.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. nidulans]
<Options>: A: aspergillus aureus
B: aspergillus nidulans (eidam) g. winter, 1884 (aka aspergillus nidulans)
C: aspergillus neotritici (aspergillus tritici) (aka aspergillus neotritici)
D: aspergillus oryzae (ahlb.) cohn, 1884 (aka aspergillus oryzae)
E: aspergillus nidulans var. nidulans (emericella nidulans var. nidulans) (aka aspergillus nidulans var. nidulans)
F: None of the above. | [B] |
<Instruct>: Given the context 'Although biotin auxotrophy is an inconvenient marker in classical genetic manipulations due to cross-feeding of biotin, transformation of the biA1 mutant with the bioDA gene from either A. nidulans or Aspergillus fumigatus led to the recovery of well-defined biotin-prototrophic colonies.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. nidulans; aspergillus fumigatus]
<Options>: A: aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884) (aka aspergillus nidulans)
B: aspergillus asper (aspergillus asperus) (aka aspergillus asper)
C: aspergillus terricola
D: sterigmatocystis nidulans (aka aspergillus nidulans)
E: aspergillus rubrum (aka aspergillus ruber)
F: aspergillus neotritici (aspergillus tritici) (aka aspergillus neotritici)
G: aspergillus aureolus (neosartorya aureola) (aka aspergillus aureolus)
H: aspergillus neoellipticus (aka aspergillus fumigatus)
I: aspergillus fumigatus fresen., 1863 (aka aspergillus fumigatus)
J: aphanothece nidulans
K: None of the above. | [D; I] |
<Instruct>: Given the context 'Although biotin auxotrophy is an inconvenient marker in classical genetic manipulations due to cross-feeding of biotin, transformation of the biA1 mutant with the bioDA gene from either A. nidulans or Aspergillus fumigatus led to the recovery of well-defined biotin-prototrophic colonies.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. nidulans; aspergillus fumigatus]
<Options>: A: aspergillus nidulans (aspergillus nidulans (eidam) g. winter, 1884) (aka aspergillus nidulans)
B: aspergillus nidulans var. nidulans (emericella nidulans var. nidulans) (aka aspergillus nidulans var. nidulans)
C: nassella nidulans
D: aspergillus neoellipticus (aka aspergillus fumigatus)
E: aspergillus domesticus
F: aspergillus avenaceus
G: aspergillus rubrum (aka aspergillus ruber)
H: aspergillus aureus
I: aspergillus cerealis
J: aspergillus terrestris (aka aspergillus terreus)
K: None of the above. | [A; D] |
<Instruct>: Given the context 'OsEDR1 negatively regulates rice bacterial resistance via activation of ethylene biosynthesis.
Rice OsEDR1 is a sequence ortholog of Arabidopsis EDR1.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rice]
<Options>: A: african wild rice (aka oryza barthii)
B: oryza sativa (asian cultivated rice) (aka oryza sativa)
C: oryza perennis
D: oryzihumus
E: red rice (aka oryza longistaminata)
F: None of the above. | [B] |
<Instruct>: Given the context 'We show here that OsEDR1-suppressing/knockout (KO) plants, which developed spontaneous lesions on the leaves, have enhanced resistance to Xanthomonas oryzae pv. oryzae (Xoo) causing bacterial blight disease.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [xanthomonas oryzae pv. oryzae; xoo]
<Options>: A: xanthomonas oryzae ("pseudomonas oryzae" uyeda and ishiyama in ishiyama 1926) (aka xanthomonas oryzae)
B: xanthobacter xylophilus
C: xanthomonas graminis (ex egli et al. 1975) (aka xanthomonas graminis)
D: xanthomonas graminis (xanthomonas graminis (ex egli et al. 1975)) (aka xanthomonas graminis)
E: dickeya oryzae
F: paracidovorax oryzae (acidovorax oryzae) (aka paracidovorax oryzae)
G: xanthomonas arboricola
H: rhizobium oryzae (aka xaviernesmea oryzae)
I: xanthomonas oryzae pv. oryzae (xanthomonas campestris pv. oryza) (aka xanthomonas oryzae pv. oryzae)
J: None of the above. | [A; A] |
<Instruct>: Given the context 'We show here that OsEDR1-suppressing/knockout (KO) plants, which developed spontaneous lesions on the leaves, have enhanced resistance to Xanthomonas oryzae pv. oryzae (Xoo) causing bacterial blight disease.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [xanthomonas oryzae pv. oryzae; xoo]
<Options>: A: rhizobium oryzae (aka xaviernesmea oryzae)
B: xanthomonas hortorum
C: xanthomonas oryzae ("pseudomonas oryzae" uyeda and ishiyama in ishiyama 1926) (aka xanthomonas oryzae)
D: xanthomonas axonopodis (xanthomonas axonoperis) (aka xanthomonas axonopodis)
E: xanthomonas cerealis
F: xanthobacter xylophilus
G: achromobacter xylosoxydans (aka achromobacter xylosoxidans)
H: dickeya oryzae
I: xanthomonas retroflexus ('xanthomonas retroflexus') (aka xanthomonas retroflexus)
J: None of the above. | [C; C] |
<Instruct>: Given the context 'These results suggest that ethylene is a negative signalling molecule in rice bacterial resistance.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rice]
<Options>: A: oryzihumus
B: oryza sativa (asian cultivated rice) (aka oryza sativa)
C: oryza officinalis
D: australian wild rice (aka oryza meridionalis)
E: red rice (aka oryza longistaminata)
F: None of the above. | [B] |
<Instruct>: Given the context 'In the rice-Xoo interaction, OsEDR1 transcriptionally promotes the synthesis of ethylene that, in turn, suppresses SA- and JA-associated defence signalling.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rice; xoo]
<Options>: A: red rice (aka oryza longistaminata)
B: ochrobactrum oryzae (aka brucella oryzae)
C: xanthomonas retroflexus ('xanthomonas retroflexus') (aka xanthomonas retroflexus)
D: oryza perennis
E: asian cultivated rice (aka oryza sativa)
F: xanthomonas oryzae ("pseudomonas oryzae" uyeda and ishiyama in ishiyama 1926) (aka xanthomonas oryzae)
G: xanthomonas cerealis
H: indian rice (aka oryza sativa indica group)
I: xanthomonas arboricola
J: oryza officinalis
K: None of the above. | [E; F] |
<Instruct>: Given the context 'In the rice-Xoo interaction, OsEDR1 transcriptionally promotes the synthesis of ethylene that, in turn, suppresses SA- and JA-associated defence signalling.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rice; xoo]
<Options>: A: xenarchus osorius (aka brachycodilla osorius)
B: xanthomonas cerealis
C: red rice (aka oryza longistaminata)
D: xanthomonas oryzae ("pseudomonas oryzae" uyeda and ishiyama in ishiyama 1926) (aka xanthomonas oryzae)
E: red rice (aka oryza rufipogon)
F: oryzopsis (ricegrass) (aka oryzopsis)
G: rice (aka oryza sativa) (aka oryza sativa)
H: xanthomonas phaseoli (xanthomonas phaseoli (ex smith 1897)) (aka xanthomonas phaseoli)
I: african wild rice (aka oryza barthii)
J: xanthomonas arboricola
K: None of the above. | [G; D] |
<Instruct>: Given the context 'Expression of diverse midgut serine proteinases in the sericigenous Lepidoptera Antheraea assamensis (Helfer) is influenced by choice of host plant species.
Antheraea assamensis is reared on various species of the Lauraceae family from north-east India for its distinctive cocoon silk.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [antheraea assamensis]
<Options>: A: acrocrypta assamensis
B: platypleura assamensis
C: nemophora assamensis
D: antheraea assama (aka antheraea assamensis)
E: anas bahamensis
F: None of the above. | [D] |
<Instruct>: Given the context 'We demonstrate differential expression of digestive trypsin and chymotrypsins in larvae feeding on a primary host, Persea bombycina Kosterm., in comparison to larvae feeding on Litsea monopetala Roxb.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [persea bombycina; litsea monopetala]
<Options>: A: litsea robusta
B: phanagenia bombycina
C: sphaeria bomba (aka phylacia bomba)
D: calliandra bombycina
E: litsea wightiana
F: littorina littorea (turbo littoreus) (aka littorina littorea)
G: litsea citrata
H: veronica bombycina
I: machilus bombycina (persea bombycina) (aka machilus bombycina)
J: litsea polyantha (aka litsea monopetala)
K: None of the above. | [I; J] |
<Instruct>: Given the context 'We demonstrate differential expression of digestive trypsin and chymotrypsins in larvae feeding on a primary host, Persea bombycina Kosterm., in comparison to larvae feeding on Litsea monopetala Roxb.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [persea bombycina; litsea monopetala]
<Options>: A: litsea coriacea
B: persea bombycina (aka machilus bombycina)
C: wurmbea monopetala
D: anaplecta bombycina
E: litsea castanea
F: polypodium bombycinum (aka pleopeltis bombycina)
G: litsea monopetala (litsea polyantha) (aka litsea monopetala)
H: phacelia bombycina
I: litsea triflora
J: phanagenia bombycina
K: None of the above. | [B; G] |
<Instruct>: Given the context 'Midgut transcript levels of the putative trypsin were higher in larvae fed P. bombycina whereas levels of transcripts encoding putative chymotrypsins were higher in larvae reared on L. monopetala.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. bombycina; l. monopetala]
<Options>: A: persea bombycina (aka machilus bombycina)
B: litsea monopetala (litsea polyantha) (aka litsea monopetala)
C: selaginella bombycina
D: lispe litorea
E: veronica bombycina
F: phanagenia bombycina
G: vigna monophylla
H: maladera bombycina (serica bombycina) (aka maladera bombycina)
I: lepidium leptopetalum
J: plantago leiopetala
K: None of the above. | [A; B] |
<Instruct>: Given the context 'Midgut transcript levels of the putative trypsin were higher in larvae fed P. bombycina whereas levels of transcripts encoding putative chymotrypsins were higher in larvae reared on L. monopetala.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. bombycina; l. monopetala]
<Options>: A: statice monopetala (aka limoniastrum monopetalum)
B: lispe litorea
C: genea bombycina (aka hydnocystis bombycina)
D: phalerodonta bombycina (notodonta bombycina) (aka phalerodonta bombycina)
E: ionidium monopetalum (aka pigea monopetala)
F: selaginella bombycina
G: triplax lepida
H: persea bombycina (aka machilus bombycina)
I: litsea monopetala (litsea polyantha) (aka litsea monopetala)
J: maladera bombycina (serica bombycina) (aka maladera bombycina)
K: None of the above. | [H; I] |
<Instruct>: Given the context 'Midgut transcript levels of the putative trypsin were higher in larvae fed P. bombycina whereas levels of transcripts encoding putative chymotrypsins were higher in larvae reared on L. monopetala.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [p. bombycina; l. monopetala]
<Options>: A: triplax lepida
B: litsea monopetala (litsea polyantha) (aka litsea monopetala)
C: phalerodonta bombycina (notodonta bombycina) (aka phalerodonta bombycina)
D: genea bombycina (aka hydnocystis bombycina)
E: maladera bombycina (serica bombycina) (aka maladera bombycina)
F: selaginella bombycina
G: lispe litorea
H: statice monopetala (aka limoniastrum monopetalum)
I: ionidium monopetalum (aka pigea monopetala)
J: None of the above. | [J; B] |
<Instruct>: Given the context 'Possible implications of host plant choice on the digestive physiology of A. assamensis are discussed.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [a. assamensis]
<Options>: A: dryopteris assamensis (nephrodium assamense) (aka dryopteris assamensis)
B: aspergillus arachidicola
C: saturnia assamensis (aka antheraea assamensis)
D: aspergillus panamensis
E: enpinanga assamensis (panacra assamensis) (aka enpinanga assamensis)
F: None of the above. | [C] |
<Instruct>: Given the context 'Functional test of the influence of Wolbachia genes on cytoplasmic incompatibility expression in Drosophila melanogaster.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [drosophila melanogaster]
<Options>: A: drosophila (aka drosophila <basidiomycete fungi>)
B: mytilia melanogaster (aka rhinophis melanogaster)
C: drosophila <flies,genus> (fruit flies) (aka drosophila <flies,genus>)
D: sophophora melanogaster (aka drosophila melanogaster)
E: drosophila elegans
F: None of the above. | [D] |
<Instruct>: Given the context 'The expression of a number of these genes in Drosophila melanogaster failed to mimic or alter CI phenotypes across a range of Wolbachia backgrounds or in the absence of Wolbachia.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [drosophila melanogaster]
<Options>: A: mytilia melanogaster (aka rhinophis melanogaster)
B: melanogaster (aka melanogaster <basidiomycete fungi>)
C: drosophila melanogaster (sophophora melanogaster) (aka drosophila melanogaster)
D: drosophila (aka drosophila <flies,subgenus>)
E: drosophila simulans
F: None of the above. | [C] |
<Instruct>: Given the context 'Differential transcription of two highly divergent gut-expressed Bm86 antigen gene homologues in the tick Rhipicephalus appendiculatus (Acari: Ixodida).
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhipicephalus appendiculatus]
<Options>: A: rhipicephalus pravus
B: rhipicephalus appendiculatus (eurhipicephalus appendiculatus) (aka rhipicephalus appendiculatus)
C: rhipicephalus praetextatus
D: rhipicephalus pusillus (rhipicephalus bursa pusillus) (aka rhipicephalus pusillus)
E: rhipicephalus congolensis
F: None of the above. | [B] |
<Instruct>: Given the context 'We describe transcriptional analysis of two exceptionally divergent homologues (Ra86) of the Bm86 gut antigen from Rhipicephalus appendiculatus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhipicephalus appendiculatus]
<Options>: A: rhipicephalus pravus
B: rhipicephalus appendiculatus (eurhipicephalus appendiculatus) (aka rhipicephalus appendiculatus)
C: rhipicephalus lunulatus
D: rhipicephalus bursa pusillus (aka rhipicephalus pusillus)
E: rhipicephalus leporis
F: None of the above. | [B] |
<Instruct>: Given the context 'Bm86 forms the basis of a commercial vaccine for the control of Rhipicephalus (Boophilus) microplus.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [rhipicephalus (boophilus) microplus]
<Options>: A: boophilus decoloratus (aka rhipicephalus decoloratus)
B: rhipicephalus pravus
C: rhipicephalus (boophilus) australis (aka rhipicephalus australis)
D: southern cattle tick (aka rhipicephalus microplus)
E: rhipicephalus follis
F: None of the above. | [D] |
<Instruct>: Given the context 'The R. appendiculatus Ra86 proteins contain 654 and 693 amino acids, with only 80% amino acid sequence identity.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [r. appendiculatus]
<Options>: A: chytriomyces appendiculatus
B: rhipicephalus congolensis
C: proteus appendicitidis
D: gladiolus appendiculatus
E: eurhipicephalus appendiculatus (aka rhipicephalus appendiculatus)
F: None of the above. | [E] |
<Instruct>: Given the context 'Overexpression of a cytochrome P450 monooxygenase, CYP6ER1, is associated with resistance to imidacloprid in the brown planthopper, Nilaparvata lugens.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [brown planthopper; nilaparvata lugens]
<Options>: A: poecile lugubris lugens (parus lugens) (aka poecile lugubris lugens)
B: brown planthopper (aka nilaparvata lugens)
C: reduvius lugens (aka pothea lugens)
D: aphodius lugens
E: small brown planthopper (aka laodelphax striatellus)
F: grape leafhopper (aka empoasca vitis)
G: agrion lugens (aka argia lugens)
H: probolus culpatorius
I: black desert grasshopper (aka taeniopoda eques)
J: None of the above. | [B; B] |
<Instruct>: Given the context 'Overexpression of a cytochrome P450 monooxygenase, CYP6ER1, is associated with resistance to imidacloprid in the brown planthopper, Nilaparvata lugens.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [brown planthopper; nilaparvata lugens]
<Options>: A: brown planthopper (aka nilaparvata lugens)
B: timarcha lugens
C: lasiocnemus lugens
D: dendarus lugens (pandarus lugens) (aka dendarus lugens)
E: progomphus borealis
F: white-backed planthopper (aka sogatella furcifera)
G: lintneria lugens (sphinx lugens) (aka lintneria lugens)
H: corn hopper (aka peregrinus maidis)
I: plantago exigua
J: None of the above. | [A; A] |
<Instruct>: Given the context 'The brown planthopper, Nilaparvata lugens, is an economically significant pest of rice throughout Asia and has evolved resistance to many insecticides including the neonicotinoid imidacloprid.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [brown planthopper; nilaparvata lugens; rice]
<Options>: A: oryzopsis (ricegrass) (aka oryzopsis)
B: plantago exigua
C: progomphus borealis
D: oryza rufipogon (common wild rice) (aka oryza rufipogon)
E: small brown planthopper (aka laodelphax striatellus)
F: crinocerus lugens (aka athaumastus lugens)
G: oryza
H: blue-legged grasshopper (aka metator pardalinus)
I: oryza sativa (asian cultivated rice) (aka oryza sativa)
J: oryza glaberrima (african rice) (aka oryza glaberrima)
K: brown planthopper (aka nilaparvata lugens)
L: parus lugens (aka poecile lugubris lugens)
M: lasiocnemus lugens
N: reduvius lugens (aka pothea lugens)
O: None of the above. | [K; K; I] |
<Instruct>: Given the context 'The brown planthopper, Nilaparvata lugens, is an economically significant pest of rice throughout Asia and has evolved resistance to many insecticides including the neonicotinoid imidacloprid.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [brown planthopper; nilaparvata lugens; rice]
<Options>: A: mormidea lugens
B: red rice (aka oryza sativa)
C: oryza perennis
D: reduvius lugens (aka pothea lugens)
E: oryza
F: black desert grasshopper (aka taeniopoda eques)
G: brown planthopper (aka nilaparvata lugens)
H: small brown planthopper (aka laodelphax striatellus)
I: grape leafhopper (aka empoasca vitis)
J: dendarus lugens (pandarus lugens) (aka dendarus lugens)
K: saprinus lugens
L: plantago exigua
M: red rice (aka oryza longistaminata)
N: oryzihumus
O: None of the above. | [G; G; B] |
<Instruct>: Given the context 'The brown planthopper, Nilaparvata lugens, is an economically significant pest of rice throughout Asia and has evolved resistance to many insecticides including the neonicotinoid imidacloprid.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [brown planthopper; nilaparvata lugens; rice]
<Options>: A: pasture grasshopper (aka melanoplus confusus)
B: red rice (aka oryza longistaminata)
C: parus lugens (aka poecile lugubris lugens)
D: bush pipit (aka anthus caffer)
E: aphodius lugens
F: small brown planthopper (aka laodelphax striatellus)
G: saxicola lugens (aka oenanthe lugens)
H: tabanus bromius
I: oryza perennis
J: brown planthopper (aka nilaparvata lugens)
K: oryza sativa (asian cultivated rice) (aka oryza sativa)
L: red rice (aka oryza rufipogon)
M: argia lugens (agrion lugens) (aka argia lugens)
N: african wild rice (aka oryza barthii)
O: None of the above. | [J; J; K] |
<Instruct>: Given the context 'The brown planthopper, Nilaparvata lugens, is an economically significant pest of rice throughout Asia and has evolved resistance to many insecticides including the neonicotinoid imidacloprid.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [brown planthopper; nilaparvata lugens; rice]
<Options>: A: pasture grasshopper (aka melanoplus confusus)
B: bush pipit (aka anthus caffer)
C: red rice (aka oryza rufipogon)
D: aphodius lugens
E: oryza perennis
F: saxicola lugens (aka oenanthe lugens)
G: red rice (aka oryza longistaminata)
H: argia lugens (agrion lugens) (aka argia lugens)
I: tabanus bromius
J: parus lugens (aka poecile lugubris lugens)
K: small brown planthopper (aka laodelphax striatellus)
L: african wild rice (aka oryza barthii)
M: brown planthopper (aka nilaparvata lugens)
N: None of the above. | [M; M; N] |
<Instruct>: Given the context 'The resistance of field populations of N. lugens to imidacloprid has been attributed to enhanced detoxification by cytochrome P450 monooxygenases (P450s), although, to date, the causative P450(s) has (have) not been identified.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [n. lugens]
<Options>: A: otiorhynchus lugens
B: eriopus lugens (aka haplophaedia lugens)
C: mormidea lugens
D: unio lugens (aka lens lugens)
E: nilaparvata lugens (brown planthopper) (aka nilaparvata lugens)
F: None of the above. | [E] |
<Instruct>: Given the context 'In the present study, biochemical assays using the model substrate 7-ethoxycoumarin showed enhanced P450 activity in several resistant N. lugens field strains when compared with a susceptible reference strain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [n. lugens]
<Options>: A: aphodius lugens
B: mormidea lugens
C: saprinus lugens
D: nilaparvata lugens (brown planthopper) (aka nilaparvata lugens)
E: lintneria lugens (sphinx lugens) (aka lintneria lugens)
F: None of the above. | [D] |
<Instruct>: Given the context 'The mRNA expression level of 32 of these was examined in susceptible, moderately resistant and highly resistant N. lugens strains using quantitative real-time PCR.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [n. lugens]
<Options>: A: eriopus lugens (aka haplophaedia lugens)
B: nervilia umphangensis
C: lintneria lugens (sphinx lugens) (aka lintneria lugens)
D: brown planthopper (aka nilaparvata lugens)
E: otiorhynchus lugens
F: None of the above. | [D] |
<Instruct>: Given the context 'A single P450 gene (CYP6ER1) was highly overexpressed in all resistant strains (up to 40-fold) and the level of expression observed in the different N. lugens strains was significantly correlated with the resistance phenotype.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [n. lugens]
<Options>: A: timarcha lugens
B: otiorhynchus lugens
C: aphodius lugens
D: brown planthopper (aka nilaparvata lugens)
E: lasiocnemus lugens
F: None of the above. | [D] |
<Instruct>: Given the context 'These results provide strong evidence for a role of CYP6ER1 in the resistance of N. lugens to imidacloprid.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [n. lugens]
<Options>: A: mormidea lugens
B: brown planthopper (aka nilaparvata lugens)
C: dohrniphora lugens
D: lasiocnemus lugens
E: otiorhynchus lugens
F: None of the above. | [B] |
<Instruct>: Given the context 'Translation efficiency of antiterminator proteins is a determinant for the difference in glucose repression of two Beta-glucoside phosphotransferase system gene clusters in Corynebacterium glutamicum R.
Corynebacterium glutamicum R has two Beta-glucoside phosphoenolpyruvate, carbohydrate phosphotransferase systems (PTS) encoded by bglF and bglF2 located in the respective clusters, bglF-bglA-bglG and bglF2-bglA2-bglG2.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [corynebacterium glutamicum r]
<Options>: A: corynebacterium intestinale
B: corynebacterium durum
C: corynebacterium casei
D: corynebacterium gallinarum
E: corynebacterium lactofermentum (aka corynebacterium glutamicum)
F: None of the above. | [E] |
<Instruct>: Given the context 'Complete genome sequence of Bifidobacterium bifidum S17.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bifidobacterium bifidum s17]
<Options>: A: actinobacterium bifidum (aka bifidobacterium bifidum)
B: bifidobacterium fermentum
C: bifidobacterium (bifidibacterium) (aka bifidobacterium)
D: bifidobacterium adolescentis (bifidobacterium stercoris) (aka bifidobacterium adolescentis)
E: bifidobacterium bifidum s17 (bifidobacterium bifidum strain s17) (aka bifidobacterium bifidum s17)
F: None of the above. | [A] |
<Instruct>: Given the context 'Here, we report on the first completely annotated genome sequence of a Bifidobacterium bifidum strain.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [bifidobacterium bifidum]
<Options>: A: bifidobacterium parvulorum (aka bifidobacterium breve)
B: bifidobacterium bifidum (lactobacillus bifidus type ii) (aka bifidobacterium bifidum)
C: bifidobacterium hominis
D: bifidobacterium subtile
E: bifidobacterium indicum
F: None of the above. | [B] |
<Instruct>: Given the context 'B. bifidum S17, isolated from feces of a breast-fed infant, was shown to strongly adhere to intestinal epithelial cells and has potent anti-inflammatory activity in vitro and in vivo.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [b. bifidum s17]
<Options>: A: bifidobacterium adolescentis (bifidobacterium stercoris) (aka bifidobacterium adolescentis)
B: nocardia bifida (aka bifidobacterium bifidum)
C: bifidobacterium subtile
D: brillia bifida
E: furcula bifida (bombyx bifida) (aka furcula bifida)
F: None of the above. | [B] |
<Instruct>: Given the context 'Simultaneous virus-specific detection of the two cassava brown streak-associated viruses by RT-PCR reveals wide distribution in East Africa, mixed infections, and infections in Manihot glaziovii.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cassava; manihot glaziovii]
<Options>: A: cassava (aka manihot esculenta)
B: cassia arida (aka senna arida)
C: vismia glaziovii
D: amphilophium glaziovii
E: eriosema glaziovii
F: manihot glaziovii
G: canavalia cassidea
H: marlierea glazioviana
I: cassena indica
J: cassia pilifera (aka senna pilifera)
K: None of the above. | [A; F] |
<Instruct>: Given the context 'Simultaneous virus-specific detection of the two cassava brown streak-associated viruses by RT-PCR reveals wide distribution in East Africa, mixed infections, and infections in Manihot glaziovii.
', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cassava; manihot glaziovii]
<Options>: A: simira glaziovii (sickingia glaziovii) (aka simira glaziovii)
B: cassava (aka manihot esculenta)
C: cassis cornuta (linnaeus, 1758) (aka cassis cornuta)
D: manihot glaziovii
E: baccharis glaziovii
F: casse (aka senna alexandrina)
G: acmaea cassis (aka lottia cassis)
H: apodanthera glaziovii
I: marlierea glazioviana
J: cassia sophera (aka senna sophera)
K: None of the above. | [B; D] |
<Instruct>: Given the context 'The expanding cassava brown streak disease (CBSD) epidemic in East Africa is caused by two ipomoviruses (genus Ipomovirus; Potyviridae), namely, Cassava brown streak virus (CBSV), and Ugandan cassava brown streak virus (UCBSV) that was described recently.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cassava; cassava brown streak virus; cbsv; ugandan cassava brown streak virus]
<Options>: A: ucbsv (aka ugandan cassava brown streak virus)
B: banana streak uganda l virus (aka banana streak ul virus)
C: banana streak uganda e virus
D: cassia yellow spot virus
E: bctv (aka beet curly top virus) (aka beet curly top virus)
F: beet black scorch virus
G: banana streak uganda h virus
H: cassis cornuta (cassis cornuta (linnaeus, 1758)) (aka cassis cornuta)
I: sorghum chlorotic spot virus (sgcsv) (aka sorghum chlorotic spot virus)
J: sicyonia brevirostris associated circular virus
K: cassava (aka manihot esculenta)
L: banana streak uganda j virus
M: cassia sophera (aka senna sophera)
N: cassia tropica (aka senna tropica)
O: cassava brown streak virus
P: beet chlorosis virus
Q: cassava seco-congo virus (aka cassava-congo cheravirus)
R: cassia pilifera (aka senna pilifera)
S: cassava brown streak uganda virus (aka ugandan cassava brown streak virus)
T: banana streak virus (bsv (aka banana streak virus))
U: None of the above. | [K; O; O; A] |
<Instruct>: Given the context 'The expanding cassava brown streak disease (CBSD) epidemic in East Africa is caused by two ipomoviruses (genus Ipomovirus; Potyviridae), namely, Cassava brown streak virus (CBSV), and Ugandan cassava brown streak virus (UCBSV) that was described recently.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cassava; cassava brown streak virus; cbsv; ugandan cassava brown streak virus]
<Options>: A: cassava frogskin associated virus
B: cpsbv (aka colombian potato soil-borne virus)
C: ugandan cassava brown streak virus (cassava brown streak uganda virus) (aka ugandan cassava brown streak virus)
D: bsbv (aka beet soil-borne virus) (aka beet soil-borne virus)
E: banana streak ua virus (banana streak uganda a virus) (aka banana streak ua virus)
F: cassava (aka manihot esculenta)
G: cassava brown streak virus
H: becv (aka bovine coronavirus) (aka bovine coronavirus)
I: beet severe curly top virus
J: cassia yellow blotch virus
K: cassava ivorian bacilliform virus
L: cassia yellow spot virus
M: banana streak uganda j virus
N: banana streak virus (bsv (aka banana streak virus))
O: cassis
P: purging cassia (aka cassia fistula)
Q: cassava colombian symptomless virus (cscsv) (aka cassava colombian symptomless virus)
R: cassia aphylla (aka senna aphylla)
S: acmaea cassis (aka lottia cassis)
T: None of the above. | [F; G; G; C] |
<Instruct>: Given the context 'The expanding cassava brown streak disease (CBSD) epidemic in East Africa is caused by two ipomoviruses (genus Ipomovirus; Potyviridae), namely, Cassava brown streak virus (CBSV), and Ugandan cassava brown streak virus (UCBSV) that was described recently.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cassava; cassava brown streak virus; cbsv; ugandan cassava brown streak virus]
<Options>: A: csv (aka cocksfoot streak virus) (aka cocksfoot streak virus)
B: banana streak uganda h virus
C: banana streak uganda e virus
D: colombian potato soil-borne virus (cpsbv) (aka colombian potato soil-borne virus)
E: cassava frogskin virus
F: ucbsv (aka ugandan cassava brown streak virus)
G: cassia sophera (aka senna sophera)
H: casse (aka senna alexandrina)
I: beet soil-borne virus (bsbv (aka beet soil-borne virus))
J: cassava frogskin associated virus
K: cassava (aka manihot esculenta)
L: cassava colombian symptomless virus (cscsv) (aka cassava colombian symptomless virus)
M: bovine serum-associated circular virus
N: cassava brown streak virus
O: cassava ivorian bacilliform virus
P: sgcsv (aka sorghum chlorotic spot virus)
Q: banana streak peru virus
R: cassava brown streak virus-[malawi:karonga 9:2009]
S: vicia cassia
T: cassia
U: None of the above. | [K; N; N; F] |
<Instruct>: Given the context 'The expanding cassava brown streak disease (CBSD) epidemic in East Africa is caused by two ipomoviruses (genus Ipomovirus; Potyviridae), namely, Cassava brown streak virus (CBSV), and Ugandan cassava brown streak virus (UCBSV) that was described recently.', select the correct biomedical concept for each mention using the provided options. Answer by listing the selected options, one for each mention, separated by semicolon. | <Mentions>: [cassava; cassava brown streak virus; cbsv; ugandan cassava brown streak virus]
<Options>: A: banana streak uganda h virus
B: cassia
C: cassava frogskin virus
D: cassava colombian symptomless virus (cscsv) (aka cassava colombian symptomless virus)
E: cassia aphylla (aka senna aphylla)
F: south african cassava mosaic virus (cassava mosaic virus) (aka south african cassava mosaic virus)
G: cassava (aka manihot esculenta)
H: cassis cornuta (cassis cornuta (linnaeus, 1758)) (aka cassis cornuta)
I: beet chlorosis virus
J: cassia arida (aka senna arida)
K: bctv (aka beet curly top virus) (aka beet curly top virus)
L: cassava ivorian bacilliform virus
M: cassava brown streak virus
N: sicyonia brevirostris associated circular virus
O: cassava brown streak uganda virus (aka ugandan cassava brown streak virus)
P: banana streak uganda b virus
Q: beet severe curly top virus
R: csv (aka cocksfoot streak virus) (aka cocksfoot streak virus)
S: None of the above. | [G; M; M; O] |
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